Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G0484 Cannabis sativa HOM05D007743 ORTHO05D004645 2.8e-91 338.6 169 100.0
CANSAT35G0055 Cannabis sativa HOM05D007592 ORTHO05D004645 1.1e-68 263.5 177 79.1
CANSAT25G1186 Cannabis sativa HOM05D007592 ORTHO05D004645 9.7e-52 207.2 167 67.1
Thhalv10019741m.g Eutrema salsugineum HOM05D007592 ORTHO05D004645 3.1e-34 149.1 169 49.1
CANSAT64G2577 Cannabis sativa HOM05D007592 ORTHO05D004645 6.1e-30 134.8 133 61.7
BolC1t03512H Brassica oleracea HOM05D007592 ORTHO05D014827 5.8e-28 128.3 96 61.5
DCAR_018612 Daucus carota HOM05D007592 ORTHO05D004645 5.0e-24 115.2 193 37.3
Atru.chr11.101 Acer truncatum HOM05D007592 ORTHO05D004645 5.6e-23 111.7 177 39.0
Atru.chr10.1040 Acer truncatum HOM05D007592 ORTHO05D004645 3.4e-20 102.4 195 36.4
Atru.chr5.2435 Acer truncatum HOM05D007743 ORTHO05D004645 1.9e-18 96.7 192 33.9
CARHR258700 Cardamine hirsuta HOM05D007592 ORTHO05D004645 4.1e-18 95.5 198 34.3
C06p19270 Brassica napus HOM05D007592 ORTHO05D033492 9.2e-18 94.4 136 42.6
Manes.13G090650 Manihot esculenta HOM05D007592 ORTHO05D004645 9.2e-18 94.4 179 34.1
Manes.04G041320 Manihot esculenta HOM05D007592 ORTHO05D004645 6.0e-17 91.7 179 34.1
CANSAT21G1689 Cannabis sativa HOM05D007743 ORTHO05D004645 1.5e-15 87.0 45 86.7
CARHR029530 Cardamine hirsuta HOM05D007592 ORTHO05D004645 1.5e-15 87.0 194 34.5
CANSAT64G0010 Cannabis sativa HOM05D007592 ORTHO05D004645 9.5e-15 84.3 106 51.9
FAN08G2971 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.2e-14 84.0 208 32.2
Manes.15G155750 Manihot esculenta HOM05D007743 ORTHO05D010219 2.1e-14 83.2 94 42.6
BraA09t38299Z Brassica rapa HOM05D007592 ORTHO05D004645 2.8e-14 82.8 142 43.7
FAN05G2464 Fragaria x ananassa HOM05D007743 ORTHO05D004645 3.6e-14 82.4 208 31.7
FAN09G0033 Fragaria x ananassa HOM05D007743 ORTHO05D004645 3.6e-14 82.4 208 31.7
FAN19G3162 Fragaria x ananassa HOM05D007743 ORTHO05D004645 3.6e-14 82.4 175 35.4
FAN26G1874 Fragaria x ananassa HOM05D007743 ORTHO05D004645 4.7e-14 82.0 208 31.7
Rhsim08G0115200 Rhododendron simsii HOM05D007743 ORTHO05D004645 4.7e-14 82.0 186 33.3
Migut.A00242 Erythranthe guttata HOM05D007592 ORTHO05D004645 8.1e-14 81.3 204 30.9
FAN09G3614 Fragaria x ananassa HOM05D007743 ORTHO05D004645 8.1e-14 81.3 195 34.4
Manes.09G090928 Manihot esculenta HOM05D007592 ORTHO05D004645 1.8e-13 80.1 115 38.3
AT1G24380 Arabidopsis thaliana HOM05D007592 ORTHO05D004645 2.3e-13 79.7 138 42.0
FvH4_1g29461 Fragaria vesca HOM05D007743 ORTHO05D010219 2.3e-13 79.7 192 33.3
FAN18G3916 Fragaria x ananassa HOM05D007743 ORTHO05D004645 2.3e-13 79.7 208 31.2
Manes.12G071166 Manihot esculenta HOM05D007743 ORTHO05D010219 3.1e-13 79.3 94 42.6
FAN26G1586 Fragaria x ananassa HOM05D007743 ORTHO05D004645 4.0e-13 79.0 208 31.2
BcaB08g34421 Brassica carinata HOM05D007743 ORTHO05D004645 5.2e-13 78.6 141 35.5
BcaC08g43897 Brassica carinata HOM05D007743 ORTHO05D004645 5.2e-13 78.6 166 36.1
BcaB06g28792 Brassica carinata HOM05D007743 ORTHO05D004645 8.9e-13 77.8 149 37.6
FvH4_2g00671 Fragaria vesca HOM05D007743 ORTHO05D004645 2.0e-12 76.6 195 33.3
Manes.14G157656 Manihot esculenta HOM05D007743 ORTHO05D010219 2.0e-12 76.6 96 38.5
CARHR057550 Cardamine hirsuta HOM05D007743 ORTHO05D004645 2.6e-12 76.3 92 40.2
BolC6t37310H Brassica oleracea HOM05D007592 ORTHO05D004645 3.4e-12 75.9 142 41.5
BcaB01g01748 Brassica carinata HOM05D007743 ORTHO05D004645 4.4e-12 75.5 154 34.4
BcaB04g19609 Brassica carinata HOM05D007743 ORTHO05D004645 9.9e-12 74.3 116 37.1
BcaB07g33427 Brassica carinata HOM05D007743 ORTHO05D004645 2.2e-11 73.2 156 32.7
Ciclev10033648m.g Citrus clementina HOM05D007592 ORTHO05D004645 2.2e-11 73.2 138 39.9
Ciclev10003979m.g Citrus clementina HOM05D001576 ORTHO05D000401 2.9e-11 72.8 187 30.5
Ciclev10018206m.g Citrus clementina HOM05D001576 ORTHO05D000401 2.9e-11 72.8 183 31.7
FvH4_2g02401 Fragaria vesca HOM05D007743 ORTHO05D010219 2.9e-11 72.8 209 29.2
RcHm_v2.0_Chr5g0049061 Rosa chinensis HOM05D007743 ORTHO05D010219 2.9e-11 72.8 92 40.2
C04p29390 Brassica napus HOM05D007592 ORTHO05D004645 3.7e-11 72.4 140 35.7
FvH4_4g12912 Fragaria vesca HOM05D007743 ORTHO05D004645 4.9e-11 72.0 170 32.4
Ciclev10017471m.g Citrus clementina HOM05D001576 ORTHO05D000401 1.9e-10 70.1 183 30.6
RcHm_v2.0_Chr2g0144051 Rosa chinensis HOM05D007743 ORTHO05D010219 1.9e-10 70.1 92 39.1
AL4G18330 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 2.4e-10 69.7 145 35.2
CSS0032344 Camellia sinensis var. sinensis HOM05D007743 ORTHO05D004645 2.4e-10 69.7 191 29.3
Ciclev10023446m.g Citrus clementina HOM05D007592 ORTHO05D004645 4.1e-10 68.9 112 41.1
CSS0013406 Camellia sinensis var. sinensis HOM05D007743 ORTHO05D004645 7.1e-10 68.2 114 31.6
CANSAT11G1366 Cannabis sativa HOM05D007592 ORTHO05D004645 7.1e-10 68.2 104 44.2
BcaC01g02275 Brassica carinata HOM05D007743 ORTHO05D004645 9.2e-10 67.8 150 32.7
AT4G10230 Arabidopsis thaliana HOM05D007592 ORTHO05D004645 1.6e-09 67.0 129 39.5
QL02p093127 Quercus lobata HOM05D001576 ORTHO05D000401 1.6e-09 67.0 94 34.0
FvH4_3g31921 Fragaria vesca HOM05D001576 ORTHO05D000401 2.7e-09 66.2 113 36.3
QL02p009469 Quercus lobata HOM05D001576 ORTHO05D000401 2.7e-09 66.2 176 29.5
C06p21250 Brassica napus HOM05D007592 ORTHO05D004645 3.5e-09 65.9 130 40.8
CARHR103730 Cardamine hirsuta HOM05D007592 ORTHO05D004645 3.5e-09 65.9 180 32.2
FAN04G2392 Fragaria x ananassa HOM05D007743 ORTHO05D004645 4.6e-09 65.5 118 34.7
Os12g0169300 Oryza sativa ssp. japonica HOM05D001576 ORTHO05D000401 7.8e-09 64.7 183 27.9
Os12g0228500 Oryza sativa ssp. japonica HOM05D001576 ORTHO05D000401 7.8e-09 64.7 183 27.9
Hma1.2p1_0921F.1_g236870 Hydrangea macrophylla HOM05D001576 ORTHO05D010219 1.0e-08 64.3 101 33.7
QL09p033218 Quercus lobata HOM05D001576 ORTHO05D000401 5.1e-08 62.0 98 37.8
QL09p040841 Quercus lobata HOM05D001576 ORTHO05D000401 5.1e-08 62.0 98 37.8
QL02p057958 Quercus lobata HOM05D001576 ORTHO05D000401 6.6e-08 61.6 178 29.2
TWI77G0630 Tripterygium wilfordii HOM05D025099 ORTHO05D000401 1.5e-07 60.5 97 32.0
CSS0034959 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.9e-07 60.1 113 31.0
CiPaw.14G121300 Carya illinoinensis HOM05D001576 ORTHO05D010219 1.9e-07 60.1 117 31.6
Ciclev10016612m.g Citrus clementina HOM05D007592 ORTHO05D004645 1.9e-07 60.1 123 36.6
Rhsim03G0135600 Rhododendron simsii HOM05D001576 ORTHO05D010219 1.9e-07 60.1 96 35.4
Zm00001eb167560 Zea mays HOM05D001576 ORTHO05D000401 1.9e-07 60.1 94 34.0
Aqoxy3G02110 Aquilegia oxysepala HOM05D001576 ORTHO05D000401 2.5e-07 59.7 92 29.3
Carub.0004s0678 Capsella rubella HOM05D007592 ORTHO05D004645 2.5e-07 59.7 174 29.9
Ciclev10027215m.g Citrus clementina HOM05D007592 ORTHO05D004645 2.5e-07 59.7 129 35.7
Rhsim07G0066400 Rhododendron simsii HOM05D001576 ORTHO05D000401 2.5e-07 59.7 116 31.0
RhsimUnG0111600 Rhododendron simsii HOM05D001576 ORTHO05D000401 2.5e-07 59.7 116 31.0
BcaB02g10737 Brassica carinata HOM05D007743 ORTHO05D004645 4.3e-07 58.9 160 29.4
Haze_20229 Corylus avellana HOM05D001576 ORTHO05D000401 4.3e-07 58.9 178 25.8
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 5.6e-07 58.5 180 24.4
FAN17G0227 Fragaria x ananassa HOM05D007743 ORTHO05D004645 5.6e-07 58.5 123 29.3
vmacro13746 Vaccinium macrocarpon HOM05D001576 ORTHO05D000401 5.6e-07 58.5 114 31.6
vmacro22863 Vaccinium macrocarpon HOM05D001576 ORTHO05D000401 5.6e-07 58.5 114 31.6
Aqoxy3G02268 Aquilegia oxysepala HOM05D001576 ORTHO05D000401 7.3e-07 58.2 94 29.8
Aqoxy6G02363 Aquilegia oxysepala HOM05D001576 ORTHO05D000401 7.3e-07 58.2 92 29.3
QL05p011416 Quercus lobata HOM05D001576 ORTHO05D016378 7.3e-07 58.2 178 29.2
Os06g0635500 Oryza sativa ssp. japonica HOM05D001576 ORTHO05D000401 9.5e-07 57.8 98 27.6
Atru.chr8.1611 Acer truncatum HOM05D007592 ORTHO05D004645 1.2e-06 57.4 103 37.9
Aqoxy1G02949 Aquilegia oxysepala HOM05D001576 ORTHO05D000401 1.2e-06 57.4 92 31.5
QL02p008668 Quercus lobata HOM05D003498 ORTHO05D004191 1.2e-06 57.4 98 28.6
TWI36G0405 Tripterygium wilfordii HOM05D001576 ORTHO05D000401 1.2e-06 57.4 179 26.8
TWI74G0405 Tripterygium wilfordii HOM05D001576 ORTHO05D000401 1.2e-06 57.4 181 26.5
Atru.chr1.3225 Acer truncatum HOM05D001576 ORTHO05D010219 1.6e-06 57.0 97 34.0
CSS0006274 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.6e-06 57.0 184 29.3
CSS0000195 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.1e-06 56.6 182 28.6
CSS0003077 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.1e-06 56.6 182 28.6
CSS0004495 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.1e-06 56.6 96 33.3
CSS0004599 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.1e-06 56.6 146 27.4
CSS0005302 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.1e-06 56.6 94 31.9
CSS0008814 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.1e-06 56.6 191 25.7
CSS0009093 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.1e-06 56.6 182 28.6
CSS0011061 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.1e-06 56.6 191 25.7
CSS0014799 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.1e-06 56.6 94 31.9
CSS0019281 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.1e-06 56.6 182 28.6
CSS0021750 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.1e-06 56.6 182 28.6
CSS0023642 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.1e-06 56.6 191 25.7
CSS0039293 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.1e-06 56.6 182 28.6
CSS0041053 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.1e-06 56.6 191 25.7
CSS0042573 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.1e-06 56.6 182 28.6
DCAR_001490 Daucus carota HOM05D007592 ORTHO05D004645 2.1e-06 56.6 125 35.2
SGA_v2.0_scaffold11G05878 Striga asiatica HOM05D001576 ORTHO05D000401 2.1e-06 56.6 180 27.2
SGA_v2.0_scaffold239G43990 Striga asiatica HOM05D001576 ORTHO05D000401 2.1e-06 56.6 180 27.2
CSS0008946 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.8e-06 56.2 191 25.7
Ciclev10033751m.g Citrus clementina HOM05D001576 ORTHO05D000401 2.8e-06 56.2 92 34.8
CiPaw.10G155100 Carya illinoinensis HOM05D001576 ORTHO05D000401 3.6e-06 55.8 114 30.7
CiPaw.15G155400 Carya illinoinensis HOM05D001576 ORTHO05D000401 4.7e-06 55.5 164 29.9
Os07g0554400 Oryza sativa ssp. japonica HOM05D001576 ORTHO05D000401 4.7e-06 55.5 88 34.1
SGA_v2.0_scaffold19G08588 Striga asiatica HOM05D001576 ORTHO05D000401 4.7e-06 55.5 167 27.5
CSS0038450 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 6.2e-06 55.1 94 30.9
CSS0042927 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 6.2e-06 55.1 183 28.4
CiPaw.07G099700 Carya illinoinensis HOM05D001576 ORTHO05D000401 6.2e-06 55.1 182 29.7
Haze_00879 Corylus avellana HOM05D001311 ORTHO05D001204 6.2e-06 55.1 128 28.9
QL10p048988 Quercus lobata HOM05D001576 ORTHO05D000401 6.2e-06 55.1 97 29.9
SGA_v2.0_scaffold260G45865 Striga asiatica HOM05D001576 ORTHO05D000401 6.2e-06 55.1 182 24.2
Oeu029633.1 Olea europaea HOM05D007592 ORTHO05D004645 8.1e-06 54.7 117 37.6
TWI38G0149 Tripterygium wilfordii HOM05D014549 ORTHO05D005194 8.1e-06 54.7 115 27.0


User provided reference genes

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