Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 1.0e-227 793.1 409 100.0
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 4.1e-181 638.3 409 80.4
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 1.1e-178 630.2 413 77.0
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 1.1e-178 630.2 413 79.2
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 1.5e-178 629.8 413 78.7
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 1.5e-178 629.8 412 78.4
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 4.3e-178 628.2 408 79.2
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 7.3e-178 627.5 413 78.5
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 6.2e-177 624.4 416 77.4
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 8.9e-176 620.5 407 76.9
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 1.5e-175 619.8 413 77.7
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 1.5e-175 619.8 413 78.2
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 3.4e-175 618.6 413 77.7
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 5.8e-175 617.8 409 78.2
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 7.6e-175 617.5 411 77.9
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 2.2e-174 615.9 413 76.3
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 2.2e-174 615.9 414 77.1
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 8.4e-174 614.0 412 77.9
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 8.4e-174 614.0 416 75.7
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 1.1e-173 613.6 411 77.4
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.1e-173 613.6 415 75.7
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 1.4e-173 613.2 413 75.8
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 3.2e-173 612.1 414 75.4
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 3.2e-173 612.1 409 76.5
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 7.1e-173 610.9 408 77.0
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 7.1e-173 610.9 409 77.5
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 1.6e-172 609.8 412 76.2
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 2.7e-172 609.0 410 75.4
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 6.0e-172 607.8 413 75.3
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 1.0e-171 607.1 413 77.0
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 1.3e-171 606.7 424 74.5
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 2.3e-171 605.9 413 76.8
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 3.0e-171 605.5 412 74.8
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 3.0e-171 605.5 415 75.4
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 3.0e-171 605.5 422 74.4
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 3.9e-171 605.1 430 73.7
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 3.9e-171 605.1 413 76.5
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 1.5e-170 603.2 410 75.6
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.9e-170 602.8 424 75.2
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 2.5e-170 602.4 418 75.1
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 3.3e-170 602.1 412 75.7
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 4.3e-170 601.7 416 74.5
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 4.3e-170 601.7 415 74.2
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 5.6e-170 601.3 413 74.3
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 9.6e-170 600.5 424 75.0
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 1.2e-169 600.1 411 75.7
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 1.6e-169 599.7 413 74.8
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 3.6e-169 598.6 411 74.9
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 4.7e-169 598.2 411 74.9
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 4.7e-169 598.2 424 74.3
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 4.7e-169 598.2 414 74.6
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 8.1e-169 597.4 416 74.8
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.4e-168 596.7 409 75.3
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 2.4e-168 595.9 415 74.7
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 2.4e-168 595.9 419 74.5
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 3.1e-168 595.5 415 73.7
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 1.2e-167 593.6 421 74.1
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 1.5e-167 593.2 413 74.6
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.5e-167 593.2 444 71.8
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 1.5e-167 593.2 414 74.4
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 2.6e-167 592.4 411 74.5
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 2.6e-167 592.4 410 75.9
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.6e-167 592.4 444 71.6
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 3.4e-167 592.0 409 73.8
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 5.8e-167 591.3 413 74.6
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 5.8e-167 591.3 412 74.3
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 7.6e-167 590.9 430 72.1
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 7.6e-167 590.9 414 74.4
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 9.9e-167 590.5 413 72.6
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 2.2e-166 589.3 424 72.2
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 2.9e-166 589.0 413 72.4
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 8.4e-166 587.4 411 73.7
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 8.4e-166 587.4 410 74.1
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 1.1e-165 587.0 410 73.9
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 1.4e-165 586.6 414 73.4
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 3.2e-165 585.5 410 73.4
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 4.2e-165 585.1 414 73.7
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 4.2e-165 585.1 407 74.4
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 5.4e-165 584.7 413 73.4
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 1.6e-164 583.2 412 72.3
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.6e-164 583.2 413 72.2
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 1.6e-164 583.2 410 74.4
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 2.1e-164 582.8 450 70.2
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 7.8e-164 580.9 415 72.5
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 7.8e-164 580.9 411 73.5
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 1.7e-163 579.7 405 73.8
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 4.3e-162 575.1 412 72.1
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 1.6e-161 573.2 420 71.9
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 6.9e-160 567.8 409 72.1
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 2.6e-159 565.8 413 71.4
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.1e-157 560.5 409 70.7
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 4.2e-157 558.5 410 70.5
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 4.2e-157 558.5 409 69.2
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 5.4e-157 558.1 362 77.6
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 5.4e-157 558.1 362 77.6
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 1.6e-156 556.6 417 69.8
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 3.5e-156 555.4 362 79.6
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 1.5e-154 550.1 411 70.3
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 2.8e-153 545.8 338 80.2
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 3.7e-153 545.4 389 72.2
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 2.0e-151 539.7 417 69.5
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 4.6e-148 528.5 415 67.7
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 3.9e-147 525.4 348 75.6
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 1.2e-143 513.8 416 66.8
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 3.8e-142 508.8 413 65.9
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 4.6e-140 501.9 356 72.8
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 3.9e-139 498.8 478 59.8
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 3.9e-139 498.8 478 59.8
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 3.3e-138 495.7 416 62.3
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 3.7e-137 492.3 317 78.2
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 1.0e-131 474.2 413 62.2
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 1.1e-128 464.2 355 67.0
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 8.5e-126 454.5 425 56.9
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 6.7e-115 418.3 425 56.7
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 4.4e-114 415.6 374 58.0
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 2.2e-113 413.3 273 76.9
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 6.5e-110 401.7 404 56.9
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 3.6e-100 369.4 322 63.7
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 1.4e-99 367.5 324 63.3
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 2.7e-95 353.2 362 57.7
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 6.6e-86 322.0 317 54.6
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 8.0e-84 315.1 416 43.8
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 7.3e-77 292.0 246 62.6
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 1.9e-72 277.3 463 39.3
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 2.4e-72 276.9 420 40.0
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 3.3e-69 266.5 469 37.1
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 4.9e-65 252.7 327 45.0
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 5.8e-58 229.2 126 84.9
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 7.1e-56 222.2 317 42.3
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 5.1e-54 216.1 134 78.4
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 1.5e-50 204.5 355 36.9
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 9.3e-48 195.3 342 35.7
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 9.6e-45 185.3 113 77.9
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 4.8e-44 183.0 103 82.5
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 3.2e-40 170.2 131 63.4
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 9.3e-40 168.7 109 74.3
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 4.9e-33 146.4 98 73.5
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 5.7e-29 132.9 120 60.0
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 1.7e-25 121.3 117 55.6
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 4.2e-24 116.7 68 83.8
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.8e-22 111.3 58 82.8
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 2.6e-18 97.4 130 45.4
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 4.2e-16 90.1 73 63.0
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 4.2e-16 90.1 103 50.5
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 3.6e-15 87.0 65 66.2
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 6.7e-14 82.8 104 45.2
unitig_899.g15265 Utricularia gibba HOM05D004608 ORTHO05D018951 3.3e-13 80.5 97 51.5
Ca_07476_v3 Cicer arietinum L. HOM05D004608 ORTHO05D018951 2.4e-11 74.3 68 61.8
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 2.6e-10 70.9 46 73.9
arahy.Tifrunner.gnm1.ann1.C1KQ7I Arachis hypogaea HOM05D004608 ORTHO05D006012 5.9e-10 69.7 63 61.9
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 1.7e-09 68.2 95 43.2
CDE05G1534 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 3.8e-09 67.0 43 69.8
QL09p040375 Quercus lobata HOM05D000176 ORTHO05D000106 2.1e-07 61.2 42 66.7
arahy.Tifrunner.gnm1.ann1.MF977T Arachis hypogaea HOM05D000158 ORTHO05D000197 2.7e-07 60.8 61 59.0
CDE05G2773 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 2.7e-07 60.8 57 61.4
HanXRQChr05g0144601 Helianthus annuus HOM05D004608 ORTHO05D018951 1.4e-06 58.5 36 75.0
HanXRQChr08g0229721 Helianthus annuus HOM05D004608 ORTHO05D018951 1.4e-06 58.5 36 75.0
HanXRQChr12g0367991 Helianthus annuus HOM05D004608 ORTHO05D018951 1.4e-06 58.5 36 75.0
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 1.8e-06 58.2 43 65.1
MD05G1213200 Malus domestica HOM05D004608 ORTHO05D006533 2.3e-06 57.8 64 53.1
MD05G1213500 Malus domestica HOM05D004608 ORTHO05D246297 3.0e-06 57.4 61 54.1
arahy.Tifrunner.gnm1.ann1.R2S7J0 Arachis hypogaea HOM05D005468 ORTHO05D004485 3.9e-06 57.0 61 55.7
EL10Ac5g11554 Beta vulgaris HOM05D003131 ORTHO05D003761 6.7e-06 56.2 40 65.0


User provided reference genes

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