Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G0379 Cannabis sativa HOM05D003622 ORTHO05D004453 0.0e+00 1624.8 848 100.0
Cfa003424 Carpinus fangiana HOM05D003622 ORTHO05D004453 0.0e+00 1087.8 835 68.7
CiPaw.03G248700 Carya illinoinensis HOM05D003622 ORTHO05D004453 0.0e+00 1084.7 864 66.9
MD15G1166400 Malus domestica HOM05D003622 ORTHO05D004453 1.3e-306 1056.2 846 67.3
Prupe.7G248800 Prunus persica HOM05D003622 ORTHO05D004453 3.8e-306 1054.7 845 67.9
MD02G1023300 Malus domestica HOM05D003622 ORTHO05D004453 2.1e-304 1048.9 843 67.6
CiPaw.04G174900 Carya illinoinensis HOM05D003622 ORTHO05D004453 3.6e-304 1048.1 835 67.9
Manes.06G047000 Manihot esculenta HOM05D003622 ORTHO05D004453 2.3e-303 1045.4 873 65.4
COL.COLO4_35161 Corchorus olitorius HOM05D003622 ORTHO05D004453 3.4e-302 1041.6 864 66.0
Duzib168G1318 Durio zibethinus HOM05D003622 ORTHO05D004453 7.5e-302 1040.4 860 65.7
RcHm_v2.0_Chr2g0087611 Rosa chinensis HOM05D003622 ORTHO05D004453 2.4e-300 1035.4 828 67.6
Thecc.09G132400 Theobroma cacao HOM05D003622 ORTHO05D004453 3.2e-300 1035.0 858 65.7
Manes.14G116100 Manihot esculenta HOM05D003622 ORTHO05D004453 4.1e-300 1034.6 867 66.0
Glyma.17G111200 Glycine max HOM05D003622 ORTHO05D004453 2.7e-299 1031.9 859 65.1
FvH4_1g02580 Fragaria vesca HOM05D003622 ORTHO05D004453 1.3e-298 1029.6 846 66.2
FAN19G0217 Fragaria x ananassa HOM05D003622 ORTHO05D004453 1.7e-298 1029.2 846 66.1
QL02p089888 Quercus lobata HOM05D003622 ORTHO05D004453 2.3e-298 1028.9 983 59.2
VMungo1215G2226 Vigna mungo HOM05D003622 ORTHO05D004453 5.0e-298 1027.7 860 65.2
Phvul.003G169000 Phaseolus vulgaris HOM05D003622 ORTHO05D004453 1.9e-297 1025.8 859 64.8
FAN28G0611 Fragaria x ananassa HOM05D003622 ORTHO05D004453 9.5e-297 1023.5 848 65.9
FAN23G2517 Fragaria x ananassa HOM05D003622 ORTHO05D004453 2.8e-296 1021.9 845 65.8
Gorai.010G061100 Gossypium raimondii HOM05D003622 ORTHO05D004453 1.4e-295 1019.6 861 64.9
arahy.Tifrunner.gnm1.ann1.HD4WN1 Arachis hypogaea HOM05D003622 ORTHO05D004453 4.0e-295 1018.1 859 64.1
Lj4g0015305 Lotus japonicus HOM05D003622 ORTHO05D004453 1.2e-294 1016.5 860 64.3
Potri.018G126100 Populus trichocarpa HOM05D003622 ORTHO05D004453 1.3e-293 1013.1 868 64.1
Dinv41474 Davidia involucrata HOM05D003622 ORTHO05D004453 6.4e-293 1010.7 831 64.9
Glyma.13G160300 Glycine max HOM05D003622 ORTHO05D004453 8.3e-293 1010.4 862 64.2
Gohir.D06G052700 Gossypium hirsutum HOM05D003622 ORTHO05D004453 8.3e-293 1010.4 861 64.5
Potri.006G065600 Populus trichocarpa HOM05D003622 ORTHO05D004453 1.2e-291 1006.5 862 64.3
Lalb_Chr13g0301561 Lupinus albus HOM05D003622 ORTHO05D004453 1.6e-291 1006.1 861 64.5
Gohir.A06G053800 Gossypium hirsutum HOM05D003622 ORTHO05D004453 2.7e-291 1005.4 860 64.1
Dinv36478 Davidia involucrata HOM05D003622 ORTHO05D004453 4.6e-291 1004.6 862 63.9
Ciclev10007427m.g Citrus clementina HOM05D003622 ORTHO05D004453 6.0e-291 1004.2 865 63.4
Sabra18G0107100 Salix brachista HOM05D003622 ORTHO05D004453 6.0e-291 1004.2 866 63.6
Gohir.A08G088500 Gossypium hirsutum HOM05D003622 ORTHO05D004453 3.0e-290 1001.9 860 64.2
Gorai.013G235300 Gossypium raimondii HOM05D003622 ORTHO05D004453 5.0e-290 1001.1 864 63.7
Lalb_Chr12g0198231 Lupinus albus HOM05D003622 ORTHO05D004453 5.6e-289 997.7 859 63.8
MELO3C010313.2 Cucumis melo HOM05D003622 ORTHO05D004453 1.2e-288 996.5 860 65.0
CsaV3_1G026740 Cucumis sativus L. HOM05D003622 ORTHO05D004453 4.0e-287 991.5 860 64.4
arahy.Tifrunner.gnm1.ann1.DJE2D0 Arachis hypogaea HOM05D003622 ORTHO05D004453 1.5e-286 989.6 900 61.1
Gorai.004G107500 Gossypium raimondii HOM05D003622 ORTHO05D004453 4.9e-285 984.6 859 62.4
Gohir.D08G099700 Gossypium hirsutum HOM05D003622 ORTHO05D004453 1.7e-282 976.1 833 64.6
Medtr4g115350 Medicago truncatula HOM05D003622 ORTHO05D004453 2.3e-282 975.7 860 62.7
Gohir.A13G200800 Gossypium hirsutum HOM05D003622 ORTHO05D004453 6.6e-282 974.2 861 61.8
Actinidia21950 Actinidia chinensis HOM05D003622 ORTHO05D004453 6.2e-280 967.6 858 61.8
TWI63G1810 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 1.4e-279 966.5 861 61.3
Sed0001481 Sechium edule HOM05D003622 ORTHO05D004453 5.8e-278 961.1 857 63.4
TWI32G0590 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 9.9e-278 960.3 858 61.0
GSVIVG01015594001 Vitis vinifera HOM05D003622 ORTHO05D004453 9.9e-278 960.3 857 62.5
Lalb_Chr07g0179261 Lupinus albus HOM05D003622 ORTHO05D004453 8.4e-277 957.2 860 61.5
TWI34G1661 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 5.4e-276 954.5 860 60.5
Sabra06G0047800 Salix brachista HOM05D003622 ORTHO05D004453 2.0e-270 936.0 977 55.2
CSS0022552 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 5.8e-270 934.5 859 60.7
Psat0s188g0040 Pisum sativum HOM05D003622 ORTHO05D004453 4.9e-269 931.4 862 60.9
Atru.chr7.1951 Acer truncatum HOM05D003622 ORTHO05D004453 1.1e-263 913.7 712 68.3
TPR.G24803 Trifolium pratense HOM05D003622 ORTHO05D004453 1.4e-263 913.3 866 60.2
FAN26G1654 Fragaria x ananassa HOM05D003622 ORTHO05D004453 4.9e-261 904.8 932 56.1
Lalb_Chr11g0072261 Lupinus albus HOM05D003622 ORTHO05D004453 2.4e-260 902.5 888 57.7
Ca_06943_v3 Cicer arietinum L. HOM05D003622 ORTHO05D004453 4.2e-260 901.7 823 60.5
Duzib187G1700 Durio zibethinus HOM05D003622 ORTHO05D004453 4.2e-260 901.7 856 58.9
Eucgr.C01387 Eucalyptus grandis HOM05D003622 ORTHO05D004453 9.3e-260 900.6 833 59.1
Sed0008371 Sechium edule HOM05D003622 ORTHO05D004453 7.9e-259 897.5 854 60.5
TAR625G0175 Trochodendron aralioides HOM05D003622 ORTHO05D004453 8.7e-258 894.0 858 58.3
Nitab4.5_0002008g0030 Nicotiana tabacum HOM05D003622 ORTHO05D004453 3.7e-240 835.5 871 54.3
AUR62013307 Chenopodium quinoa HOM05D003622 ORTHO05D004453 4.8e-240 835.1 853 55.1
AUR62011177 Chenopodium quinoa HOM05D003622 ORTHO05D004453 1.1e-239 833.9 852 54.9
vmacro07722 Vaccinium macrocarpon HOM05D003622 ORTHO05D004453 2.4e-239 832.8 798 59.0
Nitab4.5_0003393g0070 Nicotiana tabacum HOM05D003622 ORTHO05D004453 2.6e-238 829.3 871 54.2
Hund09284 Selenicereus undatus HOM05D003622 ORTHO05D004453 6.1e-235 818.1 853 55.6
Cc06_g08050 Coffea canephora HOM05D003622 ORTHO05D004453 7.9e-235 817.8 859 55.5
Peaxi162Scf00088g01327 Petunia axillaris HOM05D003622 ORTHO05D004453 2.3e-234 816.2 861 54.9
vmacro06154 Vaccinium macrocarpon HOM05D003622 ORTHO05D004453 1.5e-233 813.5 839 55.5
Sc08g0006260 Simmondsia chinensis HOM05D003622 ORTHO05D004453 1.9e-233 813.1 856 54.0
Rhsim01G0061400 Rhododendron simsii HOM05D003622 ORTHO05D004453 2.2e-232 809.7 1009 49.8
EL10Ac8g18721 Beta vulgaris HOM05D003622 ORTHO05D004453 4.8e-232 808.5 853 54.5
THA.LOC104808966 Tarenaya hassleriana HOM05D003622 ORTHO05D004453 1.1e-231 807.4 859 54.5
PGR102G2297 Punica granatum HOM05D003622 ORTHO05D004453 1.4e-231 807.0 866 54.5
SalBow1G3694 Salvia bowleyana HOM05D003622 ORTHO05D004453 6.9e-231 804.7 861 54.4
PSO017G7291 Papaver somniferum HOM05D003622 ORTHO05D004453 3.4e-230 802.4 830 54.2
PGSC0003DMG400030907 Solanum tuberosum HOM05D003622 ORTHO05D004453 5.9e-230 801.6 866 53.3
PSO170G2238 Papaver somniferum HOM05D003622 ORTHO05D004453 1.7e-229 800.0 837 53.6
Solyc07g007890.3 Solanum lycopersicum HOM05D003622 ORTHO05D004453 1.1e-228 797.3 862 53.0
Sopen07g003790 Solanum pennellii HOM05D003622 ORTHO05D004453 1.1e-228 797.3 862 52.9
Duzib150G0473 Durio zibethinus HOM05D003622 ORTHO05D004453 1.4e-228 797.0 851 52.3
Aqoxy7G03634 Aquilegia oxysepala HOM05D003622 ORTHO05D004453 1.9e-228 796.6 866 52.9
Hund26549 Selenicereus undatus HOM05D003622 ORTHO05D004453 2.2e-224 783.1 854 53.3
MSTRG.26437 Avicennia marina HOM05D003622 ORTHO05D004453 8.2e-224 781.2 864 53.6
Hma1.2p1_0343F.1_g130930 Hydrangea macrophylla HOM05D003622 ORTHO05D004453 5.9e-222 775.0 709 60.2
Rhsim03G0251600 Rhododendron simsii HOM05D003622 ORTHO05D004453 7.7e-222 774.6 851 54.6
SalBow6G3081 Salvia bowleyana HOM05D003622 ORTHO05D004453 1.3e-221 773.9 864 53.8
Cpa.g.sc46.43 Carica papaya HOM05D003622 ORTHO05D004453 3.8e-221 772.3 649 64.3
CAN.G1266.4 Capsicum annuum HOM05D003622 ORTHO05D004453 1.1e-220 770.8 836 52.3
Gohir.D13G206400 Gossypium hirsutum HOM05D003622 ORTHO05D004453 9.4e-220 767.7 864 52.5
Thhalv10003437m.g Eutrema salsugineum HOM05D003622 ORTHO05D004453 7.9e-219 764.6 849 52.2
SGA_v2.0_scaffold464G52002 Striga asiatica HOM05D003622 ORTHO05D004453 5.7e-217 758.4 845 53.3
ClCG06G011530 Citrullus lanatus HOM05D003622 ORTHO05D004453 8.2e-216 754.6 651 64.4
DCAR_009323 Daucus carota HOM05D003622 ORTHO05D004453 1.4e-215 753.8 893 51.7
CARHR217470 Cardamine hirsuta HOM05D003622 ORTHO05D004453 4.1e-215 752.3 850 51.2
BcaB06g26937 Brassica carinata HOM05D003622 ORTHO05D004453 1.2e-214 750.7 849 50.8
DCAR_020889 Daucus carota HOM05D003622 ORTHO05D004453 5.0e-213 745.3 862 51.3
A04p09700 Brassica napus HOM05D003622 ORTHO05D004453 6.5e-213 745.0 835 50.8
C04p43220 Brassica napus HOM05D003622 ORTHO05D004453 7.2e-212 741.5 841 50.5
Migut.K00423 Erythranthe guttata HOM05D003622 ORTHO05D004453 8.0e-211 738.0 856 51.4
Sp7g06890 Schrenkiella parvula HOM05D003622 ORTHO05D004453 6.7e-210 734.9 850 50.8
Actinidia07317 Actinidia chinensis HOM05D003622 ORTHO05D004453 1.3e-208 730.7 713 57.5
AL7G44290 Arabidopsis lyrata HOM05D003622 ORTHO05D004453 9.1e-207 724.5 850 50.4
Carub.0007s3125 Capsella rubella HOM05D003622 ORTHO05D004453 1.3e-205 720.7 848 48.9
THA.LOC104826553 Tarenaya hassleriana HOM05D003622 ORTHO05D004453 5.0e-205 718.8 864 50.1
CSS0014966 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 2.5e-204 716.5 652 59.5
Nn2g12120 Nelumbo nucifera HOM05D003622 ORTHO05D004453 9.4e-204 714.5 674 60.1
ATR0800G088 Amborella trichopoda HOM05D003622 ORTHO05D004453 2.7e-203 713.0 862 50.3
BcaB02g08053 Brassica carinata HOM05D003622 ORTHO05D004453 6.1e-203 711.8 855 49.2
CDE03G0113 Ceratophyllum demersum HOM05D003622 ORTHO05D004453 2.3e-202 709.9 834 49.8
Aa31LG9G18070 Aethionema arabicum HOM05D003622 ORTHO05D004453 1.5e-201 707.2 846 50.1
CSS0042071 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 3.7e-200 702.6 652 58.9
SGA_v2.0_scaffold63G21826 Striga asiatica HOM05D003622 ORTHO05D004453 1.2e-198 697.6 854 48.9
AT5G35430 Arabidopsis thaliana HOM05D003622 ORTHO05D004453 3.8e-197 692.6 842 48.2
Migut.J01215 Erythranthe guttata HOM05D003622 ORTHO05D004453 1.8e-194 683.7 857 47.8
Lj7C432T7 Lonicera japonica HOM05D003622 ORTHO05D004453 1.8e-194 683.7 957 46.4
TAR636G0579 Trochodendron aralioides HOM05D003622 ORTHO05D004453 1.5e-193 680.6 602 60.8
CDE06G0586 Ceratophyllum demersum HOM05D003622 ORTHO05D004453 6.3e-192 675.2 836 48.6
HanXRQChr10g0315861 Helianthus annuus HOM05D003622 ORTHO05D004453 9.8e-185 651.4 841 45.7
Carub.0001s0938 Capsella rubella HOM05D003622 ORTHO05D004453 1.1e-183 647.9 843 46.5
HanXRQChr12g0356631 Helianthus annuus HOM05D003622 ORTHO05D004453 9.2e-183 644.8 850 46.0
Lsat_1_v5_gn_5_91841 Lactuca sativa HOM05D003622 ORTHO05D004453 9.8e-177 624.8 842 45.7
MBI13_g37002_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 2.0e-174 617.1 646 53.7
ECA234G4065 Erigeron canadensis HOM05D003622 ORTHO05D004453 3.3e-172 609.8 832 44.1
Ah.09g224810 Amaranthus hybridus HOM05D003622 ORTHO05D004453 1.4e-170 604.4 653 53.8
Oeu056946.1 Olea europaea HOM05D003622 ORTHO05D004453 2.3e-170 603.6 645 53.8
Zm00001eb095440 Zea mays HOM05D003622 ORTHO05D004453 8.9e-170 601.7 831 43.9
Os09g0123100 Oryza sativa ssp. japonica HOM05D003622 ORTHO05D004453 2.0e-169 600.5 821 45.1
SEGI_29075 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 2.9e-168 596.7 875 43.9
Zm00001eb308130 Zea mays HOM05D003622 ORTHO05D004453 6.4e-168 595.5 832 42.7
BcaC02g09474 Brassica carinata HOM05D003622 ORTHO05D004453 1.6e-163 580.9 839 44.5
Oeu052762.1 Olea europaea HOM05D003622 ORTHO05D004453 6.8e-162 575.5 642 51.2
unitig_0.g2718 Utricularia gibba HOM05D003622 ORTHO05D004453 1.3e-157 561.2 884 42.5
Mapoly0024s0101 Marchantia polymorpha HOM05D003622 ORTHO05D004453 3.2e-151 540.0 906 39.7
BraA04t16629Z Brassica rapa HOM05D003622 ORTHO05D004453 8.1e-147 525.4 579 52.8
BolC4t25899H Brassica oleracea HOM05D003622 ORTHO05D004453 1.4e-146 524.6 585 52.6
Pp3c9_20660 Physcomitrium patens HOM05D003622 ORTHO05D004453 3.8e-136 490.0 857 37.5
HPP92_000465 Vanilla planifolia HOM05D003622 ORTHO05D004453 9.3e-135 485.3 562 50.0
Oeu055962.1 Olea europaea HOM05D003622 ORTHO05D004453 1.5e-132 478.0 772 42.7
Pp3c15_17690 Physcomitrium patens HOM05D003622 ORTHO05D004453 9.6e-132 475.3 833 37.2
BcaC02g09475 Brassica carinata HOM05D003622 ORTHO05D004453 4.9e-128 463.0 782 38.5
SHI22466 Sapria himalayana HOM05D003622 ORTHO05D004453 1.3e-123 448.4 671 45.0
SMO351G0297 Selaginella moellendorffii HOM05D003622 ORTHO05D004453 2.8e-123 447.2 828 37.1
CSS0037660 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 1.4e-119 434.9 438 55.0
unitig_748.g7167 Utricularia gibba HOM05D003622 ORTHO05D004453 2.0e-105 387.9 471 46.7
Oeu052177.3 Olea europaea HOM05D003622 ORTHO05D004453 4.8e-83 313.5 810 33.2
CBR_g27935 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-72 278.5 694 32.0
MBI13_g02370_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 2.9e-72 277.7 448 43.5
BolC4t25898H Brassica oleracea HOM05D003622 ORTHO05D004453 7.5e-60 236.5 327 46.5
unitig_748.g7166 Utricularia gibba HOM05D003622 ORTHO05D004453 7.8e-57 226.5 358 44.7
MBI13_g36807_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 7.1e-50 203.4 122 77.9
A04p09720 Brassica napus HOM05D003622 ORTHO05D004453 9.2e-50 203.0 276 46.0
BraA04t16634Z Brassica rapa HOM05D003622 ORTHO05D004453 1.6e-46 192.2 230 48.7
SEGI_39442 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 8.9e-45 186.4 336 39.6
TAR383G0647 Trochodendron aralioides HOM05D003622 ORTHO05D004453 1.3e-43 182.6 190 50.0
C04p43210 Brassica napus HOM05D003622 ORTHO05D004453 1.9e-42 178.7 208 49.0
AagrBONN_evm.TU.Sc2ySwM_344.2256 Anthoceros agrestis HOM05D003622 ORTHO05D004453 7.8e-41 173.3 305 35.7
HPP92_000473 Vanilla planifolia HOM05D003622 ORTHO05D004453 4.7e-38 164.1 236 44.1
Cpa.g.sc46.42 Carica papaya HOM05D003622 ORTHO05D004453 6.2e-38 163.7 155 62.6
Haze_25503 Corylus avellana HOM05D003622 ORTHO05D004453 2.2e-35 155.2 115 68.7
Actinidia38718 Actinidia chinensis HOM05D003622 ORTHO05D004453 1.2e-33 149.4 159 49.7
AagrBONN_evm.TU.Sc2ySwM_344.2257 Anthoceros agrestis HOM05D003622 ORTHO05D004453 2.1e-33 148.7 217 38.7
ClCG06G011520 Citrullus lanatus HOM05D003622 ORTHO05D004453 4.5e-28 131.0 115 60.0
TAR636G1395 Trochodendron aralioides HOM05D007419 ORTHO05D009327 1.4e-26 125.9 138 54.3
SEGI_22443 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 3.1e-21 108.2 118 49.2
ClCG06G011510 Citrullus lanatus HOM05D003622 ORTHO05D004453 1.5e-20 105.9 111 58.6
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 4.5e-20 104.4 156 43.6
SHI22468 Sapria himalayana HOM05D003622 ORTHO05D004453 2.2e-19 102.1 110 54.5
Actinidia38717 Actinidia chinensis HOM05D003622 ORTHO05D004453 3.8e-19 101.3 115 57.4
Potri.004G126780 Populus trichocarpa HOM05D000030 ORTHO05D000009 1.8e-16 92.4 100 52.0
SEGI_12874 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 8.7e-16 90.1 77 57.1
Potri.004G126740 Populus trichocarpa HOM05D000030 ORTHO05D000009 1.5e-15 89.4 100 51.0
SEGI_04910 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 2.5e-15 88.6 179 32.4
MBI13_g48239_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 9.6e-15 86.7 153 37.9
Sabra10G0016400 Salix brachista HOM05D003622 ORTHO05D004453 3.7e-14 84.7 56 69.6
MD02G1023900 Malus domestica HOM05D003622 ORTHO05D048666 2.4e-13 82.0 93 51.6
HPP92_000472 Vanilla planifolia HOM05D003622 ORTHO05D004453 1.2e-12 79.7 160 38.8
MBI13_g36805_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 2.2e-11 75.5 138 42.8
Haze_25504 Corylus avellana HOM05D003622 ORTHO05D004453 9.3e-10 70.1 52 67.3
Oeu042754.1 Olea europaea HOM05D003622 ORTHO05D004453 9.3e-10 70.1 56 64.3
Actinidia38716 Actinidia chinensis HOM05D003622 ORTHO05D004453 4.3e-07 61.2 57 56.1
Manes.17G022150 Manihot esculenta HOM05D003622 ORTHO05D000708 5.7e-07 60.8 81 48.1
MBI13_g02371_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D000708 1.6e-06 59.3 69 52.2


User provided reference genes

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