Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G0293 Cannabis sativa HOM05D007643 ORTHO05D007801 6.0e-55 217.2 107 100.0
Prupe.5G211300 Prunus persica HOM05D007643 ORTHO05D007801 1.7e-30 136.0 95 69.5
CiPaw.15G116100 Carya illinoinensis HOM05D007643 ORTHO05D007801 4.0e-27 124.8 90 70.0
QL10p021414 Quercus lobata HOM05D007643 ORTHO05D007801 6.9e-27 124.0 87 71.3
Thecc.03G110800 Theobroma cacao HOM05D007643 ORTHO05D007801 9.0e-27 123.6 90 68.9
RcHm_v2.0_Chr7g0183911 Rosa chinensis HOM05D007643 ORTHO05D007801 1.2e-26 123.2 95 64.2
MD14G1217500 Malus domestica HOM05D007643 ORTHO05D007801 1.5e-26 122.9 99 63.6
FAN18G4512 Fragaria x ananassa HOM05D007643 ORTHO05D007801 2.0e-26 122.5 95 64.2
ClCG06G015360 Citrullus lanatus HOM05D007643 ORTHO05D007801 9.9e-26 120.2 93 64.5
FAN08G1142 Fragaria x ananassa HOM05D007643 ORTHO05D007801 1.3e-25 119.8 92 65.2
MD06G1206900 Malus domestica HOM05D007643 ORTHO05D007801 1.3e-25 119.8 98 60.2
MELO3C017259.2 Cucumis melo HOM05D007643 ORTHO05D007801 1.7e-25 119.4 99 60.6
Duzib068G1429 Durio zibethinus HOM05D007643 ORTHO05D007801 8.4e-25 117.1 87 67.8
Eucgr.K02633 Eucalyptus grandis HOM05D007643 ORTHO05D007801 1.1e-24 116.7 90 66.7
CsaV3_1G003240 Cucumis sativus L. HOM05D007643 ORTHO05D007801 4.2e-24 114.8 90 64.4
Ciclev10022625m.g Citrus clementina HOM05D007643 ORTHO05D007801 7.1e-24 114.0 91 59.3
Gohir.D11G038100 Gossypium hirsutum HOM05D007643 ORTHO05D007801 3.5e-23 111.7 92 64.1
COL.COLO4_28832 Corchorus olitorius HOM05D007643 ORTHO05D007801 4.6e-23 111.3 93 64.5
Gorai.007G040800 Gossypium raimondii HOM05D007643 ORTHO05D007801 6.0e-23 110.9 92 64.1
Dinv36824 Davidia involucrata HOM05D007643 ORTHO05D007801 1.0e-22 110.2 95 57.9
Sed0015671 Sechium edule HOM05D007643 ORTHO05D007801 3.9e-22 108.2 90 62.2
Atru.chr9.639 Acer truncatum HOM05D007643 ORTHO05D007801 5.1e-22 107.8 101 57.4
Cfa019854 Carpinus fangiana HOM05D007643 ORTHO05D007801 1.1e-21 106.7 94 58.5
Dinv38625 Davidia involucrata HOM05D007643 ORTHO05D007801 4.3e-21 104.8 97 55.7
Rhsim12G0146900 Rhododendron simsii HOM05D000001 ORTHO05D000003 2.1e-20 102.4 93 59.1
Potri.012G065400 Populus trichocarpa HOM05D007643 ORTHO05D007801 2.8e-20 102.1 71 66.2
Lalb_Chr23g0273871 Lupinus albus HOM05D007643 ORTHO05D007801 6.2e-20 100.9 87 55.2
Sabra12G0046800 Salix brachista HOM05D007643 ORTHO05D007801 6.2e-20 100.9 71 66.2
TWI15G0080 Tripterygium wilfordii HOM05D007643 ORTHO05D007801 8.1e-20 100.5 77 66.2
vmacro16469 Vaccinium macrocarpon HOM05D007643 ORTHO05D007801 1.8e-19 99.4 93 53.8
Actinidia35057 Actinidia chinensis HOM05D007643 ORTHO05D007801 3.1e-19 98.6 99 50.5
GSVIVG01008172001 Vitis vinifera HOM05D007643 ORTHO05D007801 4.0e-19 98.2 86 59.3
Glyma.06G180500 Glycine max HOM05D007643 ORTHO05D007801 5.3e-19 97.8 87 56.3
PGR044G0452 Punica granatum HOM05D007643 ORTHO05D007801 5.3e-19 97.8 87 54.0
TWI81G0573 Tripterygium wilfordii HOM05D007643 ORTHO05D007801 6.9e-19 97.4 74 66.2
Glyma.04G185600 Glycine max HOM05D007643 ORTHO05D007801 1.2e-18 96.7 86 57.0
Actinidia18967 Actinidia chinensis HOM05D007643 ORTHO05D007801 1.5e-18 96.3 99 49.5
Phvul.009G176200 Phaseolus vulgaris HOM05D007643 ORTHO05D007801 2.6e-18 95.5 87 55.2
arahy.Tifrunner.gnm1.ann1.Z569TI Arachis hypogaea HOM05D007643 ORTHO05D007801 5.8e-18 94.4 88 61.4
Gohir.D12G187200 Gossypium hirsutum HOM05D007643 ORTHO05D007801 1.3e-17 93.2 61 67.2
PSO782G0046 Papaver somniferum HOM05D007643 ORTHO05D007801 1.3e-17 93.2 92 51.1
PSO063G2669 Papaver somniferum HOM05D007643 ORTHO05D007801 1.7e-17 92.8 92 51.1
Gohir.A12G184500 Gossypium hirsutum HOM05D007643 ORTHO05D007801 2.2e-17 92.4 68 61.8
Gorai.008G200700 Gossypium raimondii HOM05D007643 ORTHO05D007801 8.4e-17 90.5 61 65.6
Manes.14G090200 Manihot esculenta HOM05D007643 ORTHO05D007801 1.1e-16 90.1 71 60.6
THA.LOC104818362 Tarenaya hassleriana HOM05D007643 ORTHO05D007801 1.1e-16 90.1 87 50.6
Aa31LG11G2440 Aethionema arabicum HOM05D007643 ORTHO05D007801 7.1e-16 87.4 87 47.1
Lj1g0019261 Lotus japonicus HOM05D007643 ORTHO05D007801 1.2e-15 86.7 86 53.5
THA.LOC104800981 Tarenaya hassleriana HOM05D007643 ORTHO05D007801 1.6e-15 86.3 81 51.9
TPR.G15310 Trifolium pratense HOM05D007643 ORTHO05D007801 2.7e-15 85.5 85 52.9
CSS0044770 Camellia sinensis var. sinensis HOM05D007643 ORTHO05D007801 3.9e-14 81.6 99 46.5
Psat1g029200 Pisum sativum HOM05D007643 ORTHO05D007801 3.9e-14 81.6 89 49.4
Lsat_1_v5_gn_4_112541 Lactuca sativa HOM05D007643 ORTHO05D007801 8.7e-14 80.5 95 47.4
Medtr2g059060 Medicago truncatula HOM05D007643 ORTHO05D007801 8.7e-14 80.5 83 50.6
ATR0691G209 Amborella trichopoda HOM05D007643 ORTHO05D007801 1.9e-13 79.3 92 46.7
FAN13G0443 Fragaria x ananassa HOM05D007643 ORTHO05D007801 1.9e-13 79.3 59 64.4
Peaxi162Scf00017g03267 Petunia axillaris HOM05D007643 ORTHO05D007801 7.4e-13 77.4 102 46.1
FvH4_5g13250 Fragaria vesca HOM05D007643 ORTHO05D007801 9.6e-13 77.0 52 69.2
SEGI_00634 Sequoiadendron giganteum HOM05D007643 ORTHO05D007801 1.3e-12 76.6 101 42.6
Oeu059396.1 Olea europaea HOM05D007643 ORTHO05D007801 1.6e-12 76.3 83 50.6
Sopen03g033740 Solanum pennellii HOM05D007643 ORTHO05D007801 1.6e-12 76.3 85 50.6
PGSC0003DMG400024520 Solanum tuberosum HOM05D007643 ORTHO05D007801 1.6e-12 76.3 85 50.6
HPP92_019460 Vanilla planifolia HOM05D007643 ORTHO05D007801 2.8e-12 75.5 96 45.8
Aqoxy3G03786 Aquilegia oxysepala HOM05D007643 ORTHO05D007801 8.2e-12 73.9 82 45.1
MSTRG.9860 Avicennia marina HOM05D007643 ORTHO05D007801 8.2e-12 73.9 80 47.5
Nitab4.5_0000646g0290 Nicotiana tabacum HOM05D007643 ORTHO05D007801 8.2e-12 73.9 87 48.3
Os09g0473966 Oryza sativa ssp. japonica HOM05D007643 ORTHO05D007801 8.2e-12 73.9 122 37.7
Ca_26376_v3 Cicer arietinum L. HOM05D007643 ORTHO05D007801 1.1e-11 73.6 88 45.5
Manes.06G079602 Manihot esculenta HOM05D007643 ORTHO05D007801 1.1e-11 73.6 68 51.5
Nitab4.5_0002805g0050 Nicotiana tabacum HOM05D007643 ORTHO05D007801 1.1e-11 73.6 87 48.3
CAN.G982.32 Capsicum annuum HOM05D007643 ORTHO05D007801 3.1e-11 72.0 95 43.2
CDE02G0802 Ceratophyllum demersum HOM05D007643 ORTHO05D007801 3.1e-11 72.0 87 44.8
Thhalv10004975m.g Eutrema salsugineum HOM05D010173 ORTHO05D007801 4.0e-11 71.6 104 39.4
unitig_746.g26846 Utricularia gibba HOM05D007643 ORTHO05D007801 1.2e-10 70.1 88 42.0
Migut.G00548 Erythranthe guttata HOM05D007643 ORTHO05D007801 2.0e-10 69.3 85 47.1
Sp2g24160 Schrenkiella parvula HOM05D010173 ORTHO05D007801 2.6e-10 68.9 92 42.4
Nitab4.5_0002449g0120 Nicotiana tabacum HOM05D007643 ORTHO05D007801 4.5e-10 68.2 71 49.3
Nn3g17593 Nelumbo nucifera HOM05D007643 ORTHO05D007801 7.6e-10 67.4 55 60.0
Nitab4.5_0004190g0030 Nicotiana tabacum HOM05D007643 ORTHO05D007801 1.0e-09 67.0 72 47.2
Cc04_g08010 Coffea canephora HOM05D007643 ORTHO05D007801 2.9e-09 65.5 87 40.2
SGA_v2.0_scaffold67G22694 Striga asiatica HOM05D007643 ORTHO05D007801 3.8e-09 65.1 84 41.7
AUR62039686 Chenopodium quinoa HOM05D007643 ORTHO05D007801 4.9e-09 64.7 92 38.0
ECA232G2778 Erigeron canadensis HOM05D007643 ORTHO05D007801 4.9e-09 64.7 89 37.1
AUR62032152 Chenopodium quinoa HOM05D007643 ORTHO05D007801 1.1e-08 63.5 92 38.0
MSTRG.4170 Avicennia marina HOM05D007643 ORTHO05D007801 2.5e-08 62.4 76 43.4
Haze_18546 Corylus avellana HOM05D007643 ORTHO05D007801 3.2e-08 62.0 63 52.4
Zm00001eb101340 Zea mays HOM05D007643 ORTHO05D007801 3.5e-07 58.5 81 37.0
Solyc06g069350.3 Solanum lycopersicum HOM05D007643 ORTHO05D007801 6.7e-06 54.3 83 42.2
VMungo1309G2394 Vigna mungo HOM05D007643 ORTHO05D007801 6.7e-06 54.3 64 48.4


User provided reference genes

Program Settings