Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 8.4e-271 936.4 465 100.0
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 3.6e-258 894.4 462 95.2
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 2.5e-214 748.8 452 79.2
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 8.0e-213 743.8 465 78.5
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 1.0e-212 743.4 458 79.0
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 1.8e-212 742.7 462 77.9
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 2.3e-212 742.3 462 77.7
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 1.1e-211 740.0 459 78.0
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 1.5e-211 739.6 455 77.4
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 1.7e-210 736.1 452 79.0
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 2.2e-210 735.7 451 79.4
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 2.8e-210 735.3 453 76.4
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 2.8e-210 735.3 452 77.4
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 1.1e-209 733.4 453 78.8
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 4.1e-209 731.5 454 78.9
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 7.0e-209 730.7 452 78.5
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 7.0e-209 730.7 455 76.9
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 1.2e-208 729.9 452 78.3
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.0e-208 729.2 454 78.2
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.0e-208 729.2 454 78.2
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 2.0e-208 729.2 457 76.6
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 3.5e-208 728.4 456 75.4
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 4.5e-208 728.0 459 75.4
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 5.9e-208 727.6 452 76.8
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 7.7e-208 727.2 456 77.4
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 1.0e-207 726.9 452 76.8
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.9e-207 725.3 454 77.8
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.9e-207 725.3 454 77.8
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 6.5e-207 724.2 462 76.6
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 1.1e-206 723.4 453 76.8
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 1.5e-206 723.0 451 76.3
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 1.9e-206 722.6 444 77.5
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 2.5e-206 722.2 454 77.8
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 2.5e-206 722.2 455 77.1
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 2.5e-206 722.2 455 77.1
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 7.2e-206 720.7 453 77.0
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 7.2e-206 720.7 446 76.9
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 7.2e-206 720.7 449 75.9
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 9.4e-206 720.3 462 75.1
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 2.1e-205 719.2 446 77.6
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 3.6e-205 718.4 453 76.4
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 4.7e-205 718.0 453 76.4
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 4.7e-205 718.0 462 75.3
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 8.0e-205 717.2 486 72.8
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 1.8e-204 716.1 451 76.1
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.3e-204 715.7 454 77.3
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 5.2e-204 714.5 441 78.2
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 6.8e-204 714.1 452 75.7
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 1.2e-203 713.4 456 75.4
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 1.2e-203 713.4 456 76.8
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 1.5e-203 713.0 440 78.2
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 1.7e-202 709.5 441 77.3
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 1.7e-202 709.5 444 76.4
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 7.0e-201 704.1 450 76.7
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 9.1e-201 703.7 454 75.3
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 9.1e-201 703.7 437 77.3
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 1.6e-200 703.0 447 74.3
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 3.5e-200 701.8 463 73.9
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 5.9e-200 701.0 454 74.7
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 7.7e-200 700.7 451 74.5
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 7.7e-200 700.7 462 72.9
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 1.0e-199 700.3 459 73.4
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 1.3e-199 699.9 458 74.2
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 1.7e-199 699.5 451 74.1
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 2.9e-199 698.7 468 71.8
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 2.9e-199 698.7 457 72.9
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 3.8e-199 698.4 459 73.4
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 8.5e-199 697.2 458 73.6
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 1.5e-198 696.4 452 74.6
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 3.2e-198 695.3 443 75.2
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 5.5e-198 694.5 449 74.4
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 7.2e-198 694.1 448 73.9
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 1.6e-197 693.0 457 72.0
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 3.6e-197 691.8 458 74.0
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 6.1e-197 691.0 449 74.2
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 1.0e-196 690.3 460 70.2
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 1.4e-196 689.9 439 74.3
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 1.8e-196 689.5 458 73.4
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 4.0e-196 688.3 448 73.7
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 8.8e-196 687.2 464 73.3
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 1.5e-195 686.4 449 74.2
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 1.5e-195 686.4 446 73.8
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 4.4e-195 684.9 447 74.3
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 4.4e-195 684.9 432 75.2
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 4.4e-195 684.9 447 74.5
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 5.7e-195 684.5 425 75.8
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 7.5e-195 684.1 467 70.0
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 7.5e-195 684.1 453 71.7
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 1.7e-194 682.9 448 73.9
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 1.7e-194 682.9 448 73.9
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 1.7e-194 682.9 440 73.6
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 2.2e-194 682.6 460 73.0
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 2.2e-194 682.6 465 72.3
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 2.2e-194 682.6 455 73.6
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 2.8e-194 682.2 439 73.8
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 2.8e-194 682.2 458 72.5
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 2.8e-194 682.2 444 73.9
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 4.9e-194 681.4 441 75.1
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 6.3e-194 681.0 448 72.5
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 1.1e-193 680.2 434 75.3
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 2.4e-193 679.1 433 74.1
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 2.4e-193 679.1 433 74.1
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 2.4e-193 679.1 454 73.6
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 4.1e-193 678.3 449 71.7
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 4.1e-193 678.3 443 74.7
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 5.4e-193 677.9 446 72.2
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 5.4e-193 677.9 459 72.3
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 9.1e-193 677.2 443 73.6
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 9.1e-193 677.2 469 69.3
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 1.2e-192 676.8 457 72.6
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 2.7e-192 675.6 433 74.4
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 3.5e-192 675.2 418 76.6
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 4.5e-192 674.9 431 74.5
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 4.5e-192 674.9 440 73.6
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 2.9e-191 672.2 434 74.9
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 2.9e-191 672.2 433 73.9
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 1.1e-190 670.2 448 73.4
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 3.3e-190 668.7 465 71.0
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 5.5e-190 667.9 454 71.6
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 9.5e-190 667.2 413 75.8
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 6.1e-189 664.5 439 72.0
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 5.2e-188 661.4 440 70.2
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 7.5e-187 657.5 410 77.1
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 1.3e-186 656.8 410 77.1
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 1.3e-186 656.8 445 72.1
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 1.1e-185 653.7 426 74.2
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 2.0e-184 649.4 452 69.2
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 2.3e-183 646.0 464 67.5
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 2.9e-183 645.6 446 67.3
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 3.9e-183 645.2 464 68.1
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 1.6e-181 639.8 433 70.4
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 2.1e-181 639.4 393 76.3
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 1.2e-179 633.6 455 67.9
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 9.8e-179 630.6 448 67.4
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 1.2e-176 623.6 474 64.1
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 2.0e-176 622.9 368 79.1
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 2.7e-176 622.5 395 75.9
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 4.6e-176 621.7 441 67.6
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 2.5e-174 615.9 388 76.0
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 1.6e-173 613.2 378 78.0
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 8.9e-172 607.4 392 74.0
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 2.2e-170 602.8 464 64.7
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 9.2e-161 570.9 392 71.4
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 4.2e-153 545.4 432 61.8
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 1.6e-152 543.5 452 61.9
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 8.4e-146 521.2 443 59.4
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 3.9e-143 512.3 464 58.0
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.9e-142 510.0 431 58.0
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 1.1e-134 484.2 461 55.1
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 5.6e-134 481.9 423 56.0
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 1.3e-122 444.1 307 67.8
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 1.2e-120 437.6 285 74.4
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 1.2e-115 421.0 437 51.0
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 4.5e-107 392.5 237 77.2
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 2.2e-106 390.2 276 67.8
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 7.4e-102 375.2 232 77.2
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 2.8e-101 373.2 431 44.5
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 4.2e-97 359.4 425 46.4
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 4.4e-94 349.4 381 48.0
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 3.3e-73 280.0 280 55.0
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 7.8e-67 258.8 159 77.4
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 6.2e-56 222.6 165 67.9
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.0e-42 178.7 113 72.6
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.1e-41 175.3 130 63.8
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 1.9e-41 174.5 449 29.8
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 4.2e-36 156.8 93 76.3
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 9.9e-30 135.6 452 27.0
VMungo1383G1334 Vigna mungo HOM05D004143 ORTHO05D432805 2.5e-25 120.9 84 66.7
GSVIVG01027551001 Vitis vinifera HOM05D000016 ORTHO05D000109 5.3e-23 113.2 75 72.0
TPR.G22104 Trifolium pratense HOM05D004143 ORTHO05D004816 7.4e-17 92.8 60 70.0
unitig_578.g16680 Utricularia gibba HOM05D004143 ORTHO05D004816 2.5e-12 77.8 79 50.6
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 5.7e-09 66.6 415 23.6
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 8.2e-08 62.8 179 24.0
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 1.1e-07 62.4 230 25.7
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 1.1e-07 62.4 43 62.8
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 2.4e-07 61.2 43 60.5
SMO197G0098 Selaginella moellendorffii HOM05D001886 ORTHO05D005666 4.1e-07 60.5 307 21.8
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 1.5e-06 58.5 202 27.7
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 7.6e-06 56.2 198 22.2


User provided reference genes

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