Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 0.0e+00 1230.3 640 100.0
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 2.8e-261 905.2 756 69.2
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 7.9e-94 349.0 781 37.8
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 2.7e-86 323.9 769 35.2
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 1.0e-85 322.0 768 35.3
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 6.2e-83 312.8 650 38.6
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 3.1e-82 310.5 658 38.8
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 1.4e-79 301.6 735 35.8
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 6.7e-77 292.7 645 38.0
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 3.3e-76 290.4 754 34.2
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 2.4e-74 284.3 656 38.3
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 2.0e-73 281.2 733 34.7
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 2.2e-72 277.7 357 50.7
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 4.2e-71 273.5 722 33.2
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 6.1e-70 269.6 681 37.3
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 1.0e-69 268.9 724 34.0
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 1.3e-69 268.5 728 32.8
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 1.1e-68 265.4 360 49.2
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 3.3e-68 263.8 728 32.1
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 7.4e-68 262.7 729 34.2
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 9.0e-66 255.8 637 35.5
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 4.5e-65 253.4 676 32.2
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 4.5e-65 253.4 741 32.1
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 2.9e-64 250.8 810 31.2
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 5.0e-64 250.0 730 32.3
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 1.1e-63 248.8 618 36.7
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 1.4e-63 248.4 646 34.5
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 3.2e-63 247.3 668 33.5
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 4.2e-63 246.9 624 37.0
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 2.7e-62 244.2 390 44.4
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.0e-61 242.3 646 35.9
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 1.0e-61 242.3 728 32.6
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.8e-61 241.5 684 32.3
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 1.1e-60 238.8 608 35.9
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 5.7e-60 236.5 640 33.1
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.7e-59 235.0 674 32.5
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 2.2e-59 234.6 721 30.8
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.1e-58 232.3 622 36.3
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 2.4e-58 231.1 352 45.5
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 3.1e-58 230.7 333 45.3
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 4.5e-57 226.9 653 34.8
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 3.2e-55 220.7 644 32.3
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 2.7e-54 217.6 682 32.6
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 1.4e-53 215.3 791 29.8
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 5.1e-53 213.4 653 32.2
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 1.1e-52 212.2 242 52.5
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 1.1e-52 212.2 687 31.4
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 2.6e-52 211.1 726 32.5
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 3.3e-52 210.7 602 33.1
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 9.7e-52 209.1 666 32.6
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 1.7e-51 208.4 728 29.0
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 4.8e-51 206.8 626 33.4
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 4.8e-51 206.8 660 31.8
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 6.3e-51 206.5 266 47.7
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 7.0e-50 203.0 686 32.2
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 9.1e-50 202.6 687 31.0
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 1.2e-49 202.2 328 42.7
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 3.5e-49 200.7 668 31.0
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 5.0e-48 196.8 644 31.5
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 6.5e-48 196.4 627 31.6
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 1.1e-47 195.7 701 29.7
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 4.2e-47 193.7 354 41.2
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 7.2e-47 193.0 637 32.7
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 2.3e-45 188.0 648 31.0
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 8.8e-45 186.0 670 30.1
Dinv05658 Davidia involucrata HOM05D003739 ORTHO05D003996 1.5e-44 185.3 565 32.2
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 7.5e-44 183.0 600 31.2
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 9.7e-44 182.6 637 30.9
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 1.3e-43 182.2 661 30.7
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 1.3e-43 182.2 441 34.5
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 1.7e-43 181.8 640 31.1
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 2.2e-43 181.4 375 40.3
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 6.3e-43 179.9 717 30.4
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 1.4e-42 178.7 365 38.4
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 2.4e-42 177.9 182 54.4
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 9.1e-42 176.0 348 38.2
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 3.5e-41 174.1 383 38.9
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 1.0e-40 172.6 766 30.0
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 1.3e-40 172.2 706 29.5
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 5.0e-40 170.2 672 28.6
RcHm_v2.0_Chr6g0265821 Rosa chinensis HOM05D003739 ORTHO05D003996 3.2e-39 167.5 502 32.9
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 3.2e-39 167.5 605 29.6
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 1.6e-38 165.2 449 35.6
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 2.7e-38 164.5 271 41.7
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 6.8e-37 159.8 661 26.9
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 5.7e-36 156.8 560 31.2
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 4.8e-35 153.7 745 27.2
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 1.8e-34 151.8 529 30.6
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 1.2e-33 149.1 273 37.4
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 2.7e-33 147.9 148 56.8
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 4.5e-33 147.1 156 53.2
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 5.0e-32 143.7 270 38.9
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 1.5e-31 142.1 550 30.4
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 4.2e-31 140.6 661 28.4
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.2e-30 139.0 482 30.1
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.7e-30 137.9 491 31.0
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 4.7e-30 137.1 278 36.7
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 1.0e-29 136.0 249 39.4
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 8.8e-29 132.9 225 39.6
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 2.0e-28 131.7 265 36.2
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 3.4e-28 131.0 317 34.1
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.4e-28 131.0 495 28.9
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 4.4e-28 130.6 278 35.6
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 7.5e-28 129.8 328 35.1
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 1.3e-27 129.0 647 28.1
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 3.7e-27 127.5 225 41.3
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 1.4e-26 125.6 324 33.3
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 1.8e-26 125.2 490 30.2
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 4.1e-26 124.0 570 28.1
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 5.4e-26 123.6 154 44.8
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 7.0e-26 123.2 173 47.4
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 2.7e-25 121.3 268 35.8
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 2.7e-25 121.3 654 27.1
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 4.5e-25 120.6 736 25.7
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.0e-24 119.4 298 31.9
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 1.7e-24 118.6 508 27.8
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 2.3e-24 118.2 513 27.7
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 2.9e-24 117.9 293 34.5
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 5.0e-24 117.1 660 26.2
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 6.6e-24 116.7 212 40.6
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 6.6e-24 116.7 324 32.1
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 1.1e-23 115.9 254 33.5
Actinidia20856 Actinidia chinensis HOM05D003739 ORTHO05D003996 5.6e-23 113.6 565 26.0
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 7.3e-23 113.2 255 36.1
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 3.6e-22 110.9 326 32.2
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 4.7e-22 110.5 329 34.0
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 2.6e-20 104.8 385 28.6
MELO3C005063.2 Cucumis melo HOM05D003739 ORTHO05D003996 2.2e-19 101.7 169 39.1
Atru.chr12.1559 Acer truncatum HOM05D003739 ORTHO05D003996 2.9e-19 101.3 501 27.1
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 1.1e-18 99.4 165 38.8
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 1.4e-18 99.0 265 31.3
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 1.4e-18 99.0 183 37.2
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 2.4e-18 98.2 148 38.5
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.4e-18 98.2 211 32.7
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 9.2e-18 96.3 268 31.3
Sc19g0000570 Simmondsia chinensis HOM05D003739 ORTHO05D003996 9.2e-18 96.3 513 26.1
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 3.5e-17 94.4 391 28.4
FvH4_2g03360 Fragaria vesca HOM05D003739 ORTHO05D003996 1.7e-16 92.0 469 27.3
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 3.0e-16 91.3 497 27.6
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 5.0e-16 90.5 155 36.8
Glyma.10G205233 Glycine max HOM05D003739 ORTHO05D003996 1.2e-14 85.9 209 32.1
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 2.8e-14 84.7 61 60.7
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 1.0e-13 82.8 253 28.1
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.1e-13 81.3 162 36.4
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 3.1e-13 81.3 350 27.7
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 5.2e-13 80.5 120 35.0
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 2.2e-11 75.1 373 25.2
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 3.7e-11 74.3 313 31.6
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 4.9e-11 73.9 89 40.4
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 6.4e-11 73.6 59 61.0
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 2.4e-10 71.6 287 28.2
TPR.G20410 Trifolium pratense HOM05D003739 ORTHO05D003996 4.6e-09 67.4 133 38.3
CDE02G4347 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 1.0e-08 66.2 55 58.2
Glyma.16G093750 Glycine max HOM05D003739 ORTHO05D003996 3.9e-08 64.3 90 41.1
Thecc.07G171300 Theobroma cacao HOM05D003739 ORTHO05D045175 1.9e-07 62.0 103 36.9


User provided reference genes

Program Settings