Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 3.7e-134 481.5 232 100.0
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 1.8e-85 319.7 248 69.4
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 1.7e-75 286.6 240 60.4
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 3.9e-75 285.4 253 60.1
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 1.5e-74 283.5 241 60.6
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 5.6e-74 281.6 253 58.5
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.6e-73 278.9 253 57.7
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 1.4e-72 276.9 250 57.2
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 2.3e-72 276.2 250 58.0
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 4.0e-72 275.4 248 58.5
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 6.8e-72 274.6 248 57.7
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 6.8e-72 274.6 254 57.5
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 8.9e-72 274.2 253 56.1
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 1.2e-71 273.9 254 56.7
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 1.2e-71 273.9 255 56.9
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.6e-71 272.7 253 56.9
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 5.8e-71 271.6 253 56.5
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 5.8e-71 271.6 250 56.4
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 9.9e-71 270.8 249 57.8
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 9.9e-71 270.8 251 54.2
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 9.9e-71 270.8 253 56.5
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 9.9e-71 270.8 253 57.3
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.3e-70 270.4 252 57.5
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 1.7e-70 270.0 246 57.7
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 1.7e-70 270.0 241 58.5
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 1.7e-70 270.0 253 57.3
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 1.7e-70 270.0 249 56.2
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.2e-70 269.6 253 56.1
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 2.9e-70 269.2 249 54.6
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 3.7e-70 268.9 247 59.9
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 6.4e-70 268.1 250 55.6
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 6.4e-70 268.1 252 56.3
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 8.3e-70 267.7 253 56.1
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 8.3e-70 267.7 250 56.8
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 8.3e-70 267.7 250 56.8
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 8.3e-70 267.7 244 56.1
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 1.4e-69 266.9 254 56.3
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 1.9e-69 266.5 243 58.0
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 2.4e-69 266.2 244 58.2
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 3.2e-69 265.8 173 74.0
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 3.2e-69 265.8 243 56.0
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 3.2e-69 265.8 247 55.1
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 4.1e-69 265.4 247 57.5
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 7.1e-69 264.6 244 57.8
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 9.2e-69 264.2 243 56.4
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 1.2e-68 263.8 251 55.4
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 1.6e-68 263.5 244 57.0
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.6e-68 263.5 251 56.2
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 2.1e-68 263.1 247 56.7
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 2.1e-68 263.1 250 56.8
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 2.1e-68 263.1 173 72.8
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 3.5e-68 262.3 174 71.8
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 3.5e-68 262.3 253 54.9
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 3.5e-68 262.3 255 53.7
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 3.5e-68 262.3 171 73.1
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 3.5e-68 262.3 177 70.6
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 4.6e-68 261.9 252 56.0
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 4.6e-68 261.9 248 54.0
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 7.8e-68 261.2 185 66.5
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 7.8e-68 261.2 185 66.5
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 1.0e-67 260.8 251 54.2
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 1.0e-67 260.8 252 56.3
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 1.0e-67 260.8 262 52.3
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 1.0e-67 260.8 249 56.2
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 1.3e-67 260.4 247 55.9
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 2.3e-67 259.6 252 54.4
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 2.3e-67 259.6 247 57.1
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 5.1e-67 258.5 255 54.5
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 1.1e-66 257.3 252 52.4
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 1.5e-66 256.9 259 51.4
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 1.5e-66 256.9 256 52.3
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 2.5e-66 256.1 174 69.5
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 2.5e-66 256.1 173 69.4
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 3.3e-66 255.8 197 62.4
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 5.6e-66 255.0 241 56.0
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 5.6e-66 255.0 249 53.8
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 1.2e-65 253.8 251 52.2
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 1.6e-65 253.4 252 54.0
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 1.6e-65 253.4 251 55.0
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 1.6e-65 253.4 243 53.9
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 3.6e-65 252.3 248 53.6
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 3.6e-65 252.3 251 55.0
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 4.7e-65 251.9 251 50.6
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 8.1e-65 251.1 247 54.7
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 8.1e-65 251.1 245 55.1
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 1.8e-64 250.0 247 53.8
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 1.8e-64 250.0 173 67.6
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 1.8e-64 250.0 243 55.1
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 1.8e-64 250.0 284 48.9
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 3.1e-64 249.2 252 52.8
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 6.8e-64 248.1 178 68.5
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 8.9e-64 247.7 256 52.3
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 1.5e-63 246.9 238 55.0
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 2.0e-63 246.5 256 53.5
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 2.0e-63 246.5 254 52.4
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 2.0e-63 246.5 255 51.0
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 2.0e-63 246.5 264 51.1
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 3.4e-63 245.7 245 53.5
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 4.4e-63 245.4 256 53.1
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 4.4e-63 245.4 247 53.4
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 5.8e-63 245.0 171 68.4
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 5.8e-63 245.0 247 54.7
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 7.6e-63 244.6 247 53.0
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 7.6e-63 244.6 173 67.1
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 9.9e-63 244.2 172 66.9
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 1.3e-62 243.8 246 53.3
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 1.7e-62 243.4 172 66.3
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 1.7e-62 243.4 246 52.4
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 3.8e-62 242.3 238 54.6
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 3.8e-62 242.3 246 50.0
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 4.9e-62 241.9 255 51.8
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 4.1e-61 238.8 251 49.4
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 5.4e-61 238.4 258 50.8
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 9.2e-61 237.7 174 64.4
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 9.2e-61 237.7 174 64.4
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 4.6e-60 235.3 174 62.1
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 2.3e-59 233.0 241 51.5
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.9e-59 232.3 253 50.6
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 1.1e-58 230.7 168 65.5
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 1.9e-58 229.9 178 60.1
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 5.6e-58 228.4 166 67.5
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 2.1e-57 226.5 147 72.1
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 7.6e-55 218.0 243 51.4
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 2.9e-54 216.1 218 53.7
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 4.9e-54 215.3 212 56.6
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 8.4e-54 214.5 212 56.6
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 1.2e-52 210.7 213 51.2
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 2.1e-52 209.9 212 49.5
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 3.0e-51 206.1 240 46.2
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 6.6e-51 204.9 211 51.2
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.9e-50 203.4 152 62.5
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 2.5e-50 203.0 252 44.8
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 3.6e-49 199.1 138 67.4
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 5.3e-48 195.3 245 47.3
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 3.4e-47 192.6 164 52.4
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 9.9e-47 191.0 163 54.0
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 2.2e-46 189.9 168 53.0
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 3.8e-46 189.1 149 63.1
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 2.1e-44 183.3 164 50.6
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 2.3e-43 179.9 172 50.6
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 1.8e-40 170.2 253 43.9
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 2.4e-40 169.9 115 69.6
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 9.9e-39 164.5 256 39.1
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 1.7e-38 163.7 246 42.3
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 2.1e-28 130.2 147 50.3
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 1.5e-26 124.0 93 64.5
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 7.4e-26 121.7 209 39.2
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 3.7e-25 119.4 88 65.9
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 4.8e-25 119.0 79 63.3
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.4e-24 117.5 107 57.0
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 1.2e-23 114.4 213 28.6
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 8.5e-22 108.2 146 38.4
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 3.0e-19 99.8 83 63.9
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 3.3e-18 96.3 65 67.7
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 3.3e-18 96.3 96 55.2
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 9.7e-18 94.7 68 69.1
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 3.7e-17 92.8 57 68.4
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.4e-16 90.9 76 57.9
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 1.4e-13 80.9 70 52.9
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 1.0e-11 74.7 48 66.7
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.9e-11 72.8 44 70.5
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.8e-09 66.6 44 65.9
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 2.8e-09 66.6 44 65.9
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.8e-08 63.9 44 63.6
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 1.7e-06 57.4 44 63.6


User provided reference genes

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