Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G0206 Cannabis sativa HOM05D005997 ORTHO05D008323 8.6e-176 620.2 303 100.0
FAN21G1688 Fragaria x ananassa HOM05D005997 ORTHO05D008323 3.7e-118 428.7 297 71.7
RcHm_v2.0_Chr5g0042181 Rosa chinensis HOM05D005997 ORTHO05D008323 5.3e-117 424.9 292 72.9
Gohir.D01G072400 Gossypium hirsutum HOM05D005997 ORTHO05D008323 3.5e-116 422.2 305 69.5
RcHm_v2.0_Chr5g0042111 Rosa chinensis HOM05D005997 ORTHO05D008323 5.9e-116 421.4 294 71.4
FAN25G0611 Fragaria x ananassa HOM05D005997 ORTHO05D008323 5.5e-114 414.8 322 66.8
Gorai.002G095400 Gossypium raimondii HOM05D005997 ORTHO05D008323 7.2e-114 414.5 305 68.5
Thecc.07G024000 Theobroma cacao HOM05D005997 ORTHO05D008323 1.0e-112 410.6 304 68.8
TAR624G0829 Trochodendron aralioides HOM05D005997 ORTHO05D008323 1.4e-112 410.2 283 73.5
COL.COLO4_09766 Corchorus olitorius HOM05D005997 ORTHO05D008323 3.0e-112 409.1 303 69.3
Duzib213G0008 Durio zibethinus HOM05D005997 ORTHO05D008323 5.2e-112 408.3 290 71.0
Gohir.A01G086200 Gossypium hirsutum HOM05D005997 ORTHO05D008323 8.8e-112 407.5 286 71.7
Ciclev10009024m.g Citrus clementina HOM05D005997 ORTHO05D008323 1.3e-110 403.7 299 66.9
MD11G1206400 Malus domestica HOM05D005997 ORTHO05D008323 1.3e-110 403.7 304 67.8
Eucgr.F03518 Eucalyptus grandis HOM05D005997 ORTHO05D008323 2.8e-110 402.5 278 72.7
TWI38G0893 Tripterygium wilfordii HOM05D005997 ORTHO05D008323 4.8e-110 401.7 302 67.9
Lj6g0009736 Lotus japonicus HOM05D005997 ORTHO05D008323 4.1e-109 398.7 302 66.9
Hma1.2p1_0036F.1_g022850 Hydrangea macrophylla HOM05D005997 ORTHO05D008323 5.3e-109 398.3 295 68.1
Nitab4.5_0001160g0200 Nicotiana tabacum HOM05D005997 ORTHO05D008323 1.6e-108 396.7 306 67.0
Cc05_g14560 Coffea canephora HOM05D005997 ORTHO05D008323 2.0e-108 396.4 286 69.6
Nitab4.5_0010102g0010 Nicotiana tabacum HOM05D005997 ORTHO05D008323 2.0e-108 396.4 306 66.7
Prupe.4G230500 Prunus persica HOM05D005997 ORTHO05D008323 2.7e-108 396.0 305 68.5
GSVIVG01037764001 Vitis vinifera HOM05D005997 ORTHO05D008323 5.9e-108 394.8 281 71.2
Actinidia00103 Actinidia chinensis HOM05D005997 ORTHO05D008323 3.8e-107 392.1 267 73.4
TPR.G1907 Trifolium pratense HOM05D005997 ORTHO05D008323 3.8e-107 392.1 292 68.8
Potri.008G180300 Populus trichocarpa HOM05D005997 ORTHO05D008323 5.0e-107 391.7 239 78.7
Solyc07g065180.3 Solanum lycopersicum HOM05D005997 ORTHO05D008323 8.5e-107 391.0 289 68.2
VMungo0540G2314 Vigna mungo HOM05D005997 ORTHO05D008323 8.5e-107 391.0 289 67.8
PGSC0003DMG400022292 Solanum tuberosum HOM05D005997 ORTHO05D008323 1.1e-106 390.6 299 65.9
CAN.G337.36 Capsicum annuum HOM05D005997 ORTHO05D008323 1.5e-106 390.2 275 69.8
Sed0012266 Sechium edule HOM05D005997 ORTHO05D008323 1.5e-106 390.2 299 66.6
Sopen07g033400 Solanum pennellii HOM05D005997 ORTHO05D008323 1.9e-106 389.8 288 67.7
Phvul.006G051400 Phaseolus vulgaris HOM05D005997 ORTHO05D008323 2.5e-106 389.4 289 67.5
Psat5g172000 Pisum sativum HOM05D005997 ORTHO05D008323 3.2e-106 389.0 254 73.6
FvH4_3g23860 Fragaria vesca HOM05D005997 ORTHO05D008323 7.2e-106 387.9 232 79.3
CsaV3_7G018710 Cucumis sativus L. HOM05D005997 ORTHO05D008323 9.4e-106 387.5 287 67.2
Manes.03G134100 Manihot esculenta HOM05D005997 ORTHO05D008323 9.4e-106 387.5 283 67.8
CiPaw.12G135200 Carya illinoinensis HOM05D005997 ORTHO05D008323 2.1e-105 386.3 230 81.3
Sabra08G0137600 Salix brachista HOM05D005997 ORTHO05D008323 2.1e-105 386.3 295 66.8
Glyma.08G325100 Glycine max HOM05D005997 ORTHO05D008323 4.7e-105 385.2 289 66.4
ClCG09G021010 Citrullus lanatus HOM05D005997 ORTHO05D008323 8.0e-105 384.4 331 60.4
PSO210G1255 Papaver somniferum HOM05D005997 ORTHO05D008323 1.0e-104 384.0 264 70.5
Dinv40826 Davidia involucrata HOM05D005997 ORTHO05D008323 1.8e-104 383.3 280 70.0
Nn1g03269 Nelumbo nucifera HOM05D005997 ORTHO05D008323 1.8e-104 383.3 290 66.2
Sc07g0002940 Simmondsia chinensis HOM05D005997 ORTHO05D008323 5.2e-104 381.7 287 66.2
Aqoxy1G04030 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 1.5e-103 380.2 268 70.9
Migut.M01687 Erythranthe guttata HOM05D005997 ORTHO05D008323 1.5e-103 380.2 241 75.1
SalBow8G0955 Salvia bowleyana HOM05D005997 ORTHO05D008323 2.6e-103 379.4 252 72.6
Medtr3g055920 Medicago truncatula HOM05D005997 ORTHO05D008323 3.4e-103 379.0 296 66.9
Lalb_Chr06g0174051 Lupinus albus HOM05D005997 ORTHO05D008323 7.5e-103 377.9 285 65.3
arahy.Tifrunner.gnm1.ann1.N1CS9Q Arachis hypogaea HOM05D005997 ORTHO05D008323 2.2e-102 376.3 265 69.4
Ca_20145_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 2.2e-102 376.3 226 79.2
PGR044G2356 Punica granatum HOM05D005997 ORTHO05D008323 1.8e-101 373.2 215 83.3
Ca_20142_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 2.4e-101 372.9 236 77.1
arahy.Tifrunner.gnm1.ann1.JACZ02 Arachis hypogaea HOM05D005997 ORTHO05D008323 3.1e-101 372.5 280 65.7
SGA_v2.0_scaffold168G38522 Striga asiatica HOM05D005997 ORTHO05D008323 3.1e-101 372.5 289 64.0
MSTRG.6975 Avicennia marina HOM05D005997 ORTHO05D008323 4.5e-100 368.6 251 72.1
DCAR_022603 Daucus carota HOM05D005997 ORTHO05D008323 7.7e-100 367.9 232 75.0
Rhsim06G0225700 Rhododendron simsii HOM05D005997 ORTHO05D008323 1.3e-99 367.1 302 63.9
Os03g0587100 Oryza sativa ssp. japonica HOM05D005997 ORTHO05D008323 1.7e-99 366.7 224 76.3
Haze_09774 Corylus avellana HOM05D005997 ORTHO05D008323 2.3e-99 366.3 300 65.3
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 2.5e-98 362.8 226 75.7
Thhalv10011693m.g Eutrema salsugineum HOM05D005997 ORTHO05D008323 1.6e-97 360.1 255 68.2
Oeu019619.1 Olea europaea HOM05D005997 ORTHO05D008323 1.6e-97 360.1 313 61.3
Aa31LG10G3760 Aethionema arabicum HOM05D005997 ORTHO05D008323 8.0e-97 357.8 268 65.3
Lj1C884G3 Lonicera japonica HOM05D005997 ORTHO05D008323 2.3e-96 356.3 300 65.0
A06p03040 Brassica napus HOM05D005997 ORTHO05D008323 5.2e-96 355.1 256 66.8
THA.LOC104826490 Tarenaya hassleriana HOM05D005997 ORTHO05D008323 6.8e-96 354.8 233 71.7
AT1G50575 Arabidopsis thaliana HOM05D005997 ORTHO05D008323 8.8e-96 354.4 250 66.4
BraA06t23516Z Brassica rapa HOM05D005997 ORTHO05D008323 8.8e-96 354.4 255 67.5
CARHR040570 Cardamine hirsuta HOM05D005997 ORTHO05D008323 1.5e-95 353.6 245 68.2
AL1G58220 Arabidopsis lyrata HOM05D005997 ORTHO05D008323 5.7e-95 351.7 243 69.1
Carub.0001s3961 Capsella rubella HOM05D005997 ORTHO05D008323 7.5e-95 351.3 252 66.3
Sp1g37390 Schrenkiella parvula HOM05D005997 ORTHO05D008323 1.3e-94 350.5 227 71.8
Zm00001eb049320 Zea mays HOM05D005997 ORTHO05D008323 3.7e-94 349.0 233 71.7
MBI16_g42314_MAGBIO Magnolia biondii HOM05D005997 ORTHO05D008323 6.3e-94 348.2 259 68.7
Lsat_1_v5_gn_7_114661 Lactuca sativa HOM05D005997 ORTHO05D008323 1.1e-93 347.4 289 63.0
BcaC08g43226 Brassica carinata HOM05D005997 ORTHO05D008323 2.4e-93 346.3 256 65.2
C06p05740 Brassica napus HOM05D005997 ORTHO05D008323 2.4e-93 346.3 256 65.2
BolC6t35684H Brassica oleracea HOM05D005997 ORTHO05D008323 2.4e-93 346.3 256 65.2
BcaB07g33491 Brassica carinata HOM05D005997 ORTHO05D008323 9.2e-93 344.4 243 67.1
QL08p008622 Quercus lobata HOM05D005997 ORTHO05D008323 3.3e-90 335.9 323 57.3
ATR0712G169 Amborella trichopoda HOM05D005997 ORTHO05D008323 5.6e-90 335.1 223 70.0
SEGI_04256 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 7.3e-90 334.7 248 64.5
EL10Ac4g07628 Beta vulgaris HOM05D005997 ORTHO05D008323 4.7e-89 332.0 262 63.4
MELO3C024895.2 Cucumis melo HOM05D005997 ORTHO05D008323 1.1e-85 320.9 238 68.9
PGR031G3624 Punica granatum HOM05D005997 ORTHO05D008323 1.1e-85 320.9 186 82.8
unitig_899.g15278 Utricularia gibba HOM05D005997 ORTHO05D008323 1.1e-85 320.9 192 78.1
AagrBONN_evm.TU.Sc2ySwM_362.871 Anthoceros agrestis HOM05D005997 ORTHO05D008323 2.7e-84 316.2 224 66.1
SMO196G0283 Selaginella moellendorffii HOM05D005997 ORTHO05D008323 2.3e-83 313.2 217 66.4
Cpa.g.sc12.206 Carica papaya HOM05D005997 ORTHO05D008323 1.9e-82 310.1 270 60.0
Psat5g171680 Pisum sativum HOM05D005997 ORTHO05D008323 3.3e-82 309.3 177 82.5
Peaxi162Scf00047g00845 Petunia axillaris HOM05D005997 ORTHO05D008323 4.3e-82 308.9 237 66.7
Atru.BG.132.p Acer truncatum HOM05D005997 ORTHO05D008323 3.6e-81 305.8 173 83.8
vmacro11568 Vaccinium macrocarpon HOM05D005997 ORTHO05D008323 8.0e-81 304.7 192 76.0
PSO302G0218 Papaver somniferum HOM05D005997 ORTHO05D008323 2.9e-78 296.2 284 56.3
Pp3c14_23810 Physcomitrium patens HOM05D005997 ORTHO05D008323 1.3e-75 287.3 257 56.0
AUR62040674 Chenopodium quinoa HOM05D005997 ORTHO05D008323 6.6e-75 285.0 192 69.3
AUR62015935 Chenopodium quinoa HOM05D005997 ORTHO05D008323 1.9e-74 283.5 173 75.7
CDE07G1873 Ceratophyllum demersum HOM05D005997 ORTHO05D008323 4.7e-73 278.9 196 70.4
Glyma.18G084600 Glycine max HOM05D005997 ORTHO05D008323 1.6e-65 253.8 164 76.8
Dinv10299 Davidia involucrata HOM05D005997 ORTHO05D008323 8.4e-54 214.9 176 64.2
MCO09G728 Micromonas commoda HOM05D004293 ORTHO05D005044 3.5e-52 209.5 225 46.2
arahy.Tifrunner.gnm1.ann1.D6FGWZ Arachis hypogaea HOM05D005997 ORTHO05D008323 4.6e-52 209.1 182 60.4
MCO11G065 Micromonas commoda HOM05D004293 ORTHO05D005044 6.6e-51 205.3 221 45.7
CSS0016170 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.1e-48 198.0 133 72.9
HPP92_007350 Vanilla planifolia HOM05D005997 ORTHO05D008323 1.4e-48 197.6 170 60.6
CSS0047434 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 3.1e-48 196.4 133 72.2
CSS0025804 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 2.2e-46 190.3 175 60.0
Cre01.g039850 Chlamydomonas reinhardtii HOM05D005997 ORTHO05D005044 6.4e-46 188.7 235 41.7
PRCOL_00002636 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 9.3e-45 184.9 224 45.5
Cfa020073 Carpinus fangiana HOM05D005997 ORTHO05D008323 2.7e-44 183.3 117 76.1
PRCOL_00000116 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 5.6e-42 175.6 213 43.2
Atru.chr7.2230 Acer truncatum HOM05D005997 ORTHO05D008323 1.6e-36 157.5 97 77.3
Atru.chr7.2351 Acer truncatum HOM05D005997 ORTHO05D008323 1.6e-36 157.5 97 77.3
Aqoxy1G04027 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 3.5e-36 156.4 106 68.9
QL08p004262 Quercus lobata HOM05D005997 ORTHO05D008323 6.5e-30 135.6 135 57.8
QL08p058329 Quercus lobata HOM05D005997 ORTHO05D008323 6.5e-30 135.6 135 57.8
Prupe.4G230300 Prunus persica HOM05D005997 ORTHO05D008323 1.9e-29 134.0 106 66.0
QL05p025044 Quercus lobata HOM05D005997 ORTHO05D008323 4.8e-25 119.4 156 48.1
CSS0048391 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 9.0e-24 115.2 79 69.6
SEGI_34153 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 4.2e-21 106.3 61 78.7
CSS0044071 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 3.3e-18 96.7 56 80.4
QL08p004281 Quercus lobata HOM05D005997 ORTHO05D007626 3.1e-16 90.1 159 39.0
CSS0025137 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 6.9e-16 89.0 50 82.0
QL08p058354 Quercus lobata HOM05D005997 ORTHO05D007626 7.7e-15 85.5 131 42.7
QL08p004325 Quercus lobata HOM05D005997 ORTHO05D337094 3.2e-13 80.1 105 47.6
QL11p054366 Quercus lobata HOM05D005997 ORTHO05D338109 3.2e-13 80.1 105 47.6
Rhsim03G0100400 Rhododendron simsii HOM05D005997 ORTHO05D338268 1.2e-12 78.2 98 45.9
Lsat_1_v5_gn_8_39280 Lactuca sativa HOM05D005997 ORTHO05D230963 7.4e-10 68.9 48 64.6
arahy.Tifrunner.gnm1.ann1.U3B0HF Arachis hypogaea HOM05D003842 ORTHO05D026908 7.7e-07 58.9 36 77.8
Dinv12329 Davidia involucrata HOM05D000450 ORTHO05D000327 1.7e-06 57.8 160 28.1
CAN.G423.34 Capsicum annuum HOM05D000450 ORTHO05D000327 5.0e-06 56.2 179 27.9
Eucgr.A01146 Eucalyptus grandis HOM05D000450 ORTHO05D000327 5.0e-06 56.2 180 28.9
Os04g0518800 Oryza sativa ssp. japonica HOM05D000450 ORTHO05D000327 5.0e-06 56.2 190 31.1
Thecc.09G343100 Theobroma cacao HOM05D000450 ORTHO05D000327 6.5e-06 55.8 178 29.2
COL.COLO4_18315 Corchorus olitorius HOM05D000450 ORTHO05D000327 8.5e-06 55.5 179 28.5
FAN05G0193 Fragaria x ananassa HOM05D000450 ORTHO05D000327 8.5e-06 55.5 193 29.5


User provided reference genes

Program Settings