Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G0204 Cannabis sativa HOM05D004245 ORTHO05D004783 7.7e-115 417.2 210 100.0
QL02p008410 Quercus lobata HOM05D004245 ORTHO05D004783 3.2e-76 288.9 217 71.9
Gohir.A05G194800 Gossypium hirsutum HOM05D004245 ORTHO05D004783 2.3e-74 282.7 214 70.1
QL02p008145 Quercus lobata HOM05D004245 ORTHO05D004783 2.3e-74 282.7 217 70.5
Gohir.D05G198000 Gossypium hirsutum HOM05D004245 ORTHO05D004783 1.1e-73 280.4 214 69.6
Thecc.08G025300 Theobroma cacao HOM05D004245 ORTHO05D004783 1.1e-73 280.4 192 75.5
Gorai.009G203100 Gossypium raimondii HOM05D004245 ORTHO05D004783 4.3e-73 278.5 214 69.2
Manes.18G027901 Manihot esculenta HOM05D004245 ORTHO05D004783 1.2e-72 276.9 170 79.4
CARHR155580 Cardamine hirsuta HOM05D004245 ORTHO05D004783 1.6e-72 276.6 197 75.1
COL.COLO4_26330 Corchorus olitorius HOM05D004245 ORTHO05D004783 1.6e-72 276.6 214 70.1
Duzib116G0455 Durio zibethinus HOM05D004245 ORTHO05D004783 2.8e-72 275.8 174 79.3
GSVIVG01009696001 Vitis vinifera HOM05D004245 ORTHO05D004783 2.8e-72 275.8 177 81.9
THA.LOC104813208 Tarenaya hassleriana HOM05D004245 ORTHO05D004783 3.6e-72 275.4 175 79.4
Ciclev10002428m.g Citrus clementina HOM05D004245 ORTHO05D004783 6.2e-72 274.6 203 72.4
Oeu029863.1 Olea europaea HOM05D004245 ORTHO05D004783 1.4e-71 273.5 174 79.9
MSTRG.1283 Avicennia marina HOM05D004245 ORTHO05D004783 4.0e-71 271.9 176 76.1
TAR381G1372 Trochodendron aralioides HOM05D004245 ORTHO05D004783 4.0e-71 271.9 213 70.4
Oeu049959.1 Olea europaea HOM05D004245 ORTHO05D004783 5.2e-71 271.6 172 79.1
Oeu049960.1 Olea europaea HOM05D004245 ORTHO05D004783 5.2e-71 271.6 172 79.1
FvH4_2g39911 Fragaria vesca HOM05D004245 ORTHO05D004783 6.8e-71 271.2 209 72.7
Atru.chr13.1763 Acer truncatum HOM05D004245 ORTHO05D004783 1.2e-70 270.4 173 78.6
Eucgr.F01560 Eucalyptus grandis HOM05D004245 ORTHO05D004783 1.5e-70 270.0 170 81.2
AT3G46940 Arabidopsis thaliana HOM05D004245 ORTHO05D004783 2.0e-70 269.6 165 82.4
RcHm_v2.0_Chr6g0300871 Rosa chinensis HOM05D004245 ORTHO05D004783 3.4e-70 268.9 208 72.1
Sp5g14800 Schrenkiella parvula HOM05D004245 ORTHO05D004783 4.4e-70 268.5 169 80.5
TWI12G0235 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 5.8e-70 268.1 166 81.3
AL5G26160 Arabidopsis lyrata HOM05D004245 ORTHO05D004783 7.5e-70 267.7 165 83.0
Lj4A41T61 Lonicera japonica HOM05D004245 ORTHO05D004783 9.9e-70 267.3 182 77.5
Thhalv10011147m.g Eutrema salsugineum HOM05D004245 ORTHO05D004783 1.3e-69 266.9 169 79.3
GSVIVG01037336001 Vitis vinifera HOM05D004245 ORTHO05D004783 1.3e-69 266.9 177 79.1
MD15G1031300 Malus domestica HOM05D004245 ORTHO05D004783 2.2e-69 266.2 180 76.7
Ah.12g056070 Amaranthus hybridus HOM05D004245 ORTHO05D004783 4.9e-69 265.0 216 69.9
Dinv36073 Davidia involucrata HOM05D004245 ORTHO05D004783 4.9e-69 265.0 210 68.6
TWI56G0048 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 4.9e-69 265.0 170 77.6
EL10Ac5g11904 Beta vulgaris HOM05D004245 ORTHO05D004783 6.4e-69 264.6 170 81.2
Potri.002G261900 Populus trichocarpa HOM05D004245 ORTHO05D004783 6.4e-69 264.6 171 79.5
Cpa.g.sc36.67 Carica papaya HOM05D004245 ORTHO05D004783 1.1e-68 263.8 170 78.8
AUR62027309 Chenopodium quinoa HOM05D004245 ORTHO05D004783 1.9e-68 263.1 170 80.0
PGR031G3519 Punica granatum HOM05D004245 ORTHO05D004783 1.9e-68 263.1 215 68.4
Duzib093G0228 Durio zibethinus HOM05D004245 ORTHO05D004783 2.4e-68 262.7 181 75.1
BraA06t25141Z Brassica rapa HOM05D004245 ORTHO05D004783 3.2e-68 262.3 190 73.2
Lalb_Chr10g0103901 Lupinus albus HOM05D004245 ORTHO05D004783 3.2e-68 262.3 218 66.5
C03p71110 Brassica napus HOM05D004245 ORTHO05D004783 5.4e-68 261.5 190 73.2
BolC3t19396H Brassica oleracea HOM05D004245 ORTHO05D004783 5.4e-68 261.5 190 73.2
TAR365G0431 Trochodendron aralioides HOM05D004245 ORTHO05D004783 5.4e-68 261.5 170 78.2
MSTRG.22299 Avicennia marina HOM05D004245 ORTHO05D004783 7.1e-68 261.2 169 78.7
PSO832G4589 Papaver somniferum HOM05D004245 ORTHO05D004783 9.2e-68 260.8 178 75.8
Carub.0005s1316 Capsella rubella HOM05D004245 ORTHO05D004783 1.2e-67 260.4 174 75.3
Prupe.1G380600 Prunus persica HOM05D004245 ORTHO05D004783 1.2e-67 260.4 215 67.9
Aa31LG4G15890 Aethionema arabicum HOM05D004245 ORTHO05D004783 1.6e-67 260.0 170 79.4
Ciclev10009684m.g Citrus clementina HOM05D004245 ORTHO05D004783 2.1e-67 259.6 166 78.9
Manes.05G161000 Manihot esculenta HOM05D004245 ORTHO05D004783 2.1e-67 259.6 170 75.9
A06p20620 Brassica napus HOM05D004245 ORTHO05D004783 2.7e-67 259.2 172 77.3
Oeu056187.1 Olea europaea HOM05D004245 ORTHO05D004783 2.7e-67 259.2 167 80.2
Phvul.008G243100 Phaseolus vulgaris HOM05D004245 ORTHO05D004783 2.7e-67 259.2 184 72.8
Aqoxy2G01756 Aquilegia oxysepala HOM05D004245 ORTHO05D004783 4.6e-67 258.5 171 78.4
Glyma.14G207800 Glycine max HOM05D004245 ORTHO05D004783 7.8e-67 257.7 212 68.9
Cc10_g03000 Coffea canephora HOM05D004245 ORTHO05D004783 1.0e-66 257.3 170 76.5
MD08G1034400 Malus domestica HOM05D004245 ORTHO05D004783 1.0e-66 257.3 172 77.3
HanXRQChr05g0151891 Helianthus annuus HOM05D004245 ORTHO05D004783 3.0e-66 255.8 216 67.6
Actinidia29827 Actinidia chinensis HOM05D004245 ORTHO05D004783 8.6e-66 254.2 170 75.3
Sopen01g041550 Solanum pennellii HOM05D004245 ORTHO05D004783 8.6e-66 254.2 152 86.2
PGSC0003DMG400022502 Solanum tuberosum HOM05D004245 ORTHO05D004783 8.6e-66 254.2 152 86.2
Nn1g05030 Nelumbo nucifera HOM05D004245 ORTHO05D004783 1.1e-65 253.8 209 67.0
AUR62007424 Chenopodium quinoa HOM05D004245 ORTHO05D004783 1.9e-65 253.1 170 79.4
Sc02g0006240 Simmondsia chinensis HOM05D004245 ORTHO05D004783 1.9e-65 253.1 172 76.7
CAN.G1273.28 Capsicum annuum HOM05D004245 ORTHO05D004783 2.5e-65 252.7 171 76.0
Nn5g29570 Nelumbo nucifera HOM05D004245 ORTHO05D004783 2.5e-65 252.7 170 74.7
Solyc01g100030.5.1 Solanum lycopersicum HOM05D004245 ORTHO05D004783 2.5e-65 252.7 171 76.6
HanXRQChr08g0223611 Helianthus annuus HOM05D004245 ORTHO05D004783 3.3e-65 252.3 204 66.2
PGSC0003DMG400024725 Solanum tuberosum HOM05D004245 ORTHO05D004783 3.3e-65 252.3 171 76.6
MBI16_g37752_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 5.6e-65 251.5 166 77.1
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 7.3e-65 251.1 203 66.5
ECA246G2445 Erigeron canadensis HOM05D004245 ORTHO05D004783 1.2e-64 250.4 171 76.6
Sopen01g043550 Solanum pennellii HOM05D004245 ORTHO05D004783 2.8e-64 249.2 171 76.0
CiPaw.15G077400 Carya illinoinensis HOM05D004245 ORTHO05D004783 3.6e-64 248.8 149 84.6
Atru.chr13.494 Acer truncatum HOM05D004245 ORTHO05D004783 6.2e-64 248.1 144 85.4
Medtr3g063110 Medicago truncatula HOM05D004245 ORTHO05D004783 6.2e-64 248.1 152 83.6
Psat5g146640 Pisum sativum HOM05D004245 ORTHO05D004783 1.1e-63 247.3 140 88.6
MELO3C010935.2 Cucumis melo HOM05D004245 ORTHO05D004783 1.4e-63 246.9 209 65.6
TPR.G19056 Trifolium pratense HOM05D004245 ORTHO05D004783 1.8e-63 246.5 143 85.3
MBI16_g37698_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 2.4e-63 246.1 199 67.3
Ca_15096_v3 Cicer arietinum L. HOM05D004245 ORTHO05D004783 3.1e-63 245.7 140 88.6
Actinidia22552 Actinidia chinensis HOM05D004245 ORTHO05D004783 4.0e-63 245.4 186 71.5
Actinidia38010 Actinidia chinensis HOM05D004245 ORTHO05D004783 5.2e-63 245.0 167 74.3
Cc00_g32610 Coffea canephora HOM05D004245 ORTHO05D004783 8.9e-63 244.2 171 75.4
TPR.G37404 Trifolium pratense HOM05D004245 ORTHO05D004783 8.9e-63 244.2 149 81.2
TWI36G0248 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 8.9e-63 244.2 157 81.5
PSO591G0217 Papaver somniferum HOM05D004245 ORTHO05D004783 1.5e-62 243.4 171 73.7
ClCG08G015180 Citrullus lanatus HOM05D004245 ORTHO05D004783 2.6e-62 242.7 176 71.6
VMungo0647G1970 Vigna mungo HOM05D004245 ORTHO05D004783 3.4e-62 242.3 160 77.5
CAN.G134.178 Capsicum annuum HOM05D004245 ORTHO05D004783 5.8e-62 241.5 153 82.4
DCAR_020361 Daucus carota HOM05D004245 ORTHO05D004783 5.8e-62 241.5 201 65.7
Rhsim07G0237700 Rhododendron simsii HOM05D004245 ORTHO05D004783 5.8e-62 241.5 205 65.9
Migut.N00497 Erythranthe guttata HOM05D004245 ORTHO05D004783 7.6e-62 241.1 193 68.9
Lalb_Chr17g0345751 Lupinus albus HOM05D004245 ORTHO05D004783 2.9e-61 239.2 193 68.4
Glyma.18G048400 Glycine max HOM05D004245 ORTHO05D004783 3.8e-61 238.8 141 83.0
CsaV3_2G028630 Cucumis sativus L. HOM05D004245 ORTHO05D004783 6.4e-61 238.0 210 63.8
CDE12G0639 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 4.2e-60 235.3 166 70.5
Pp3c16_25660 Physcomitrium patens HOM05D004245 ORTHO05D004783 1.2e-59 233.8 163 76.7
HPP92_000905 Vanilla planifolia HOM05D004245 ORTHO05D004783 2.1e-59 233.0 170 70.6
CDE04G3793 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 7.8e-59 231.1 166 71.7
MD08G1034500 Malus domestica HOM05D004245 ORTHO05D004783 7.8e-59 231.1 172 71.5
SEGI_17618 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 7.8e-59 231.1 159 74.2
Rhsim06G0034500 Rhododendron simsii HOM05D004245 ORTHO05D004783 1.0e-58 230.7 169 70.4
PSO764G0231 Papaver somniferum HOM05D004245 ORTHO05D004783 1.7e-58 229.9 163 71.2
ATR0124G052 Amborella trichopoda HOM05D004245 ORTHO05D004783 3.9e-58 228.8 167 72.5
Zm00001eb052270 Zea mays HOM05D004245 ORTHO05D004783 1.9e-57 226.5 202 63.4
Sabra02G0198600 Salix brachista HOM05D004245 ORTHO05D004783 2.5e-57 226.1 168 70.8
AagrBONN_evm.TU.Sc2ySwM_117.1092 Anthoceros agrestis HOM05D004245 ORTHO05D004783 5.6e-57 224.9 168 67.3
Solyc01g097970.4 Solanum lycopersicum HOM05D004245 ORTHO05D004783 5.6e-57 224.9 141 82.3
SMO146G0275 Selaginella moellendorffii HOM05D004245 ORTHO05D004783 2.1e-56 223.0 136 80.1
SEGI_12681 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 6.2e-56 221.5 160 71.2
Mapoly0133s0010 Marchantia polymorpha HOM05D004245 ORTHO05D004783 6.9e-55 218.0 137 75.9
HPP92_000939 Vanilla planifolia HOM05D004245 ORTHO05D004783 1.4e-52 210.3 182 64.3
Os03g0669100 Oryza sativa ssp. japonica HOM05D004245 ORTHO05D004783 1.9e-52 209.9 160 69.4
CBR_g37457 Chara braunii HOM05D004245 ORTHO05D004783 3.0e-50 202.6 140 72.9
MCO05G374 Micromonas commoda HOM05D004245 ORTHO05D004783 6.6e-50 201.4 136 74.3
Cre16.g667850 Chlamydomonas reinhardtii HOM05D004245 ORTHO05D004783 5.8e-46 188.3 136 67.6
Cfa018144 Carpinus fangiana HOM05D004245 ORTHO05D004783 3.8e-45 185.7 175 61.1
PRCOL_00002276 Prasinoderma coloniale HOM05D004245 ORTHO05D004783 2.0e-38 163.3 139 60.4
Nitab4.5_0004954g0010 Nicotiana tabacum HOM05D004245 ORTHO05D004783 1.2e-35 154.1 121 64.5
Cc10_g02990 Coffea canephora HOM05D004245 ORTHO05D004783 2.1e-35 153.3 134 61.2
Peaxi162Scf00690g00216 Petunia axillaris HOM05D004245 ORTHO05D004783 2.1e-35 153.3 136 62.5
unitig_85.g27241 Utricularia gibba HOM05D004245 ORTHO05D004783 3.9e-34 149.1 82 85.4
PGSC0003DMG400005159 Solanum tuberosum HOM05D004245 ORTHO05D004783 1.1e-33 147.5 121 62.8
Solyc04g080250.3 Solanum lycopersicum HOM05D004245 ORTHO05D004783 1.5e-33 147.1 121 63.6
QL02p008415 Quercus lobata HOM05D000526 ORTHO05D004783 4.3e-33 145.6 112 67.9
CAN.G1226.1 Capsicum annuum HOM05D004245 ORTHO05D004783 7.4e-33 144.8 118 63.6
Oeu029862.1 Olea europaea HOM05D004245 ORTHO05D004783 5.3e-31 138.7 103 68.0
unitig_578.g16734 Utricularia gibba HOM05D004245 ORTHO05D004783 3.4e-30 136.0 128 62.5
CBR_g21266 Chara braunii HOM05D004245 ORTHO05D004783 4.2e-28 129.0 136 52.2
Hund11091 Selenicereus undatus HOM05D004245 ORTHO05D004783 3.5e-27 125.9 134 59.0
SHI03308 Sapria himalayana HOM05D004245 ORTHO05D004783 1.0e-26 124.4 80 78.8
CBR_g21272 Chara braunii HOM05D004245 ORTHO05D004783 6.7e-26 121.7 150 44.0
DCAR_020970 Daucus carota HOM05D004245 ORTHO05D004783 6.7e-26 121.7 88 70.5
vmacro04520 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 1.9e-25 120.2 94 69.1
Cfa018886 Carpinus fangiana HOM05D004245 ORTHO05D004783 4.3e-25 119.0 119 58.8
Peaxi162Scf00037g01715 Petunia axillaris HOM05D004245 ORTHO05D004783 4.3e-25 119.0 87 72.4
Sopen04g033830 Solanum pennellii HOM05D004245 ORTHO05D004783 8.2e-24 114.8 88 67.0
Atru.chr6.1642 Acer truncatum HOM05D004245 ORTHO05D004783 2.4e-23 113.2 82 68.3
Nitab4.5_0006179g0050 Nicotiana tabacum HOM05D004245 ORTHO05D004783 2.4e-23 113.2 108 61.1
SGA_v2.0_scaffold326G48710 Striga asiatica HOM05D004245 ORTHO05D004783 5.3e-23 112.1 98 62.2
Nitab4.5_0002612g0110 Nicotiana tabacum HOM05D004245 ORTHO05D004783 6.9e-23 111.7 89 69.7
Sed0016726 Sechium edule HOM05D004245 ORTHO05D004783 9.0e-23 111.3 133 51.9
Lsat_1_v5_gn_8_78860 Lactuca sativa HOM05D004245 ORTHO05D004783 7.7e-22 108.2 125 53.6
Lsat_1_v5_gn_5_29181 Lactuca sativa HOM05D004245 ORTHO05D004783 2.2e-21 106.7 118 55.9
Nitab4.5_0002361g0180 Nicotiana tabacum HOM05D004245 ORTHO05D004783 2.2e-21 106.7 59 89.8
SHI09478 Sapria himalayana HOM05D004245 ORTHO05D004783 2.5e-20 103.2 70 72.9
Nitab4.5_0002840g0080 Nicotiana tabacum HOM05D004245 ORTHO05D004783 4.2e-20 102.4 69 78.3
Peaxi162Scf00225g00127 Petunia axillaris HOM05D004245 ORTHO05D004783 2.1e-19 100.1 71 73.2
Atru.chr6.1643 Acer truncatum HOM05D004245 ORTHO05D004783 1.0e-18 97.8 69 69.6
Atru.chr2.1957 Acer truncatum HOM05D004245 ORTHO05D004783 2.8e-16 89.7 56 71.4
Atru.chr13.1771 Acer truncatum HOM05D004245 ORTHO05D004783 6.9e-15 85.1 82 57.3
vmacro21634 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 5.9e-14 82.0 132 43.9
SHI20747 Sapria himalayana HOM05D003927 ORTHO05D004905 2.9e-13 79.7 63 65.1
Lsat_1_v5_gn_0_32861 Lactuca sativa HOM05D031264 ORTHO05D004783 8.5e-13 78.2 123 42.3
COL.COLO4_04917 Corchorus olitorius HOM05D004245 ORTHO05D004783 3.2e-12 76.3 45 80.0
Eucgr.C01497 Eucalyptus grandis HOM05D004245 ORTHO05D004783 3.0e-10 69.7 44 79.5
Actinidia15321 Actinidia chinensis HOM05D004245 ORTHO05D004783 8.8e-10 68.2 58 63.8
Dinv03456 Davidia involucrata HOM05D004245 ORTHO05D004783 8.8e-10 68.2 110 41.8
FAN15G2450 Fragaria x ananassa HOM05D004245 ORTHO05D004783 1.1e-09 67.8 100 48.0
unitig_85.g27240 Utricularia gibba HOM05D004245 ORTHO05D004783 1.1e-09 67.8 66 54.5
FAN27G0770 Fragaria x ananassa HOM05D004245 ORTHO05D004783 5.7e-09 65.5 53 66.0
arahy.Tifrunner.gnm1.ann1.8Q4PR4 Arachis hypogaea HOM05D004245 ORTHO05D004783 1.3e-08 64.3 37 81.1
SalBow8G3107 Salvia bowleyana HOM05D004245 ORTHO05D004783 7.0e-07 58.5 107 43.9
arahy.Tifrunner.gnm1.ann1.20SHP8 Arachis hypogaea HOM05D004245 ORTHO05D004783 2.0e-06 57.0 112 32.1
arahy.Tifrunner.gnm1.ann1.3ZQ4SN Arachis hypogaea HOM05D004245 ORTHO05D004783 4.5e-06 55.8 30 83.3
Nitab4.5_0000110g0590 Nicotiana tabacum HOM05D004245 ORTHO05D004783 7.7e-06 55.1 47 61.7


User provided reference genes

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