Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 0.0e+00 1091.3 540 100.0
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 1.4e-184 650.2 548 64.1
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 4.0e-184 648.7 547 63.1
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 2.1e-180 636.3 550 62.2
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 2.8e-177 625.9 550 61.6
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 4.8e-177 625.2 548 61.1
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 5.9e-175 618.2 545 60.7
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 5.9e-175 618.2 544 60.1
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 4.2e-173 612.1 544 58.3
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 2.5e-170 602.8 545 58.9
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 3.3e-170 602.4 545 59.3
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 9.7e-170 600.9 544 56.8
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 1.3e-169 600.5 557 58.9
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 1.3e-169 600.5 557 58.9
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 1.1e-168 597.4 545 58.9
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 1.1e-168 597.4 544 57.7
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 1.2e-167 594.0 545 57.4
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 2.6e-167 592.8 544 57.2
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 2.9e-166 589.3 545 57.6
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 3.8e-166 589.0 545 57.6
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 1.9e-165 586.6 541 58.8
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 1.0e-163 580.9 561 56.3
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 1.4e-163 580.5 561 57.8
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 6.7e-163 578.2 536 56.3
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 9.7e-162 574.3 528 57.6
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 9.7e-162 574.3 545 55.8
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 3.7e-161 572.4 545 56.1
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.4e-160 569.7 549 55.4
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 9.1e-160 567.8 545 55.6
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 9.1e-160 567.8 545 55.6
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 2.0e-159 566.6 545 56.0
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 3.4e-159 565.8 544 54.6
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.4e-157 560.5 525 56.2
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 1.2e-156 557.4 546 54.9
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 1.6e-156 557.0 544 54.4
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 5.2e-155 552.0 544 53.7
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 4.8e-153 545.4 546 54.0
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 6.3e-153 545.0 545 53.9
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 9.1e-152 541.2 496 59.7
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 2.6e-151 539.7 559 55.3
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 1.3e-150 537.3 548 54.2
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 8.5e-150 534.6 532 54.3
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 1.8e-147 526.9 543 51.9
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 3.7e-145 519.2 540 53.9
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 8.2e-145 518.1 542 53.3
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 8.2e-145 518.1 547 52.1
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 9.1e-144 514.6 551 50.5
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 5.9e-143 511.9 543 52.3
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 1.7e-142 510.4 545 51.4
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 3.8e-142 509.2 543 51.2
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 3.8e-142 509.2 547 51.0
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 3.8e-142 509.2 543 51.6
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 3.2e-141 506.1 556 50.9
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 9.4e-141 504.6 542 51.7
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 1.2e-140 504.2 546 51.3
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 2.1e-140 503.4 541 49.4
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 6.1e-140 501.9 543 50.1
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 1.4e-139 500.7 551 50.3
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 6.8e-139 498.4 551 49.7
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 8.8e-139 498.0 539 50.3
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 1.5e-138 497.3 553 50.3
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 3.4e-138 496.1 539 50.3
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 2.2e-137 493.4 546 50.2
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 7.0e-136 488.4 560 48.9
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 2.9e-134 483.0 524 49.4
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 1.1e-133 481.1 560 47.1
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 2.5e-133 479.9 541 49.5
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 5.5e-133 478.8 548 48.9
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 2.8e-132 476.5 558 49.6
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 3.6e-132 476.1 536 50.9
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 4.7e-132 475.7 536 49.3
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 6.1e-132 475.3 544 47.2
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 6.1e-132 475.3 568 48.4
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 8.9e-131 471.5 545 47.0
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 1.2e-130 471.1 531 48.2
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 2.0e-130 470.3 552 47.3
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 2.6e-130 469.9 528 48.3
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 7.5e-130 468.4 544 48.3
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 6.3e-129 465.3 551 47.0
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 8.3e-129 464.9 524 46.9
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 3.1e-128 463.0 523 46.7
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 5.4e-128 462.2 533 48.0
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 5.4e-128 462.2 522 47.7
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 5.4e-128 462.2 531 48.0
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 2.0e-127 460.3 532 47.6
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 4.5e-127 459.1 553 47.2
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 4.5e-127 459.1 521 47.8
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 5.9e-127 458.8 525 47.6
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 1.3e-126 457.6 544 46.7
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 1.7e-126 457.2 548 45.1
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 2.9e-126 456.4 539 46.9
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 3.8e-126 456.1 532 47.0
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 8.6e-126 454.9 525 47.8
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 1.1e-125 454.5 526 47.5
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 8.0e-124 448.4 527 46.1
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 1.2e-122 444.5 525 45.0
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 3.4e-122 443.0 543 46.2
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 7.0e-120 435.3 544 47.2
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.5e-117 427.6 533 46.3
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 9.5e-117 424.9 528 43.8
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 1.2e-116 424.5 543 43.6
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 6.8e-115 418.7 488 50.0
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 1.4e-107 394.4 548 40.5
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 6.8e-107 392.1 574 42.2
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 1.2e-106 391.3 537 43.2
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 9.9e-106 388.3 521 41.8
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 1.3e-105 387.9 498 46.4
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.4e-104 383.6 528 41.9
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 3.2e-104 383.3 538 42.9
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 2.5e-101 373.6 531 42.0
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 5.6e-101 372.5 543 40.1
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 1.1e-99 368.2 544 39.5
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 1.1e-99 368.2 522 40.8
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 8.9e-99 365.2 423 48.7
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 7.1e-96 355.5 505 40.8
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 1.2e-90 338.2 546 39.6
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.0e-90 337.4 524 39.3
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 4.5e-82 309.7 558 36.7
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 1.3e-81 308.1 468 40.2
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 8.7e-78 295.4 514 35.8
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.9e-77 294.3 505 36.0
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.4e-75 288.1 543 35.4
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 4.6e-71 273.1 529 35.7
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.0e-66 257.7 484 34.9
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.4e-66 256.9 484 34.9
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 2.0e-58 231.1 542 30.3
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 2.0e-50 204.5 144 73.6
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.6e-50 204.1 482 32.2
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.6e-50 204.1 482 32.2
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.2e-49 201.1 382 33.8
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 1.4e-48 198.4 258 44.2
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 2.7e-47 194.1 144 66.0
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 6.7e-46 189.5 167 59.3
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 1.5e-45 188.3 308 39.0
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 1.5e-37 161.8 545 28.6
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 1.1e-35 155.6 478 28.2
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 8.5e-33 146.0 557 25.5
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 2.1e-31 141.4 436 27.8
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 5.7e-29 133.3 468 27.8
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 7.5e-29 132.9 535 25.4
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 1.2e-23 115.5 98 60.2
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 6.1e-23 113.2 501 23.0
FAN05G5117 Fragaria x ananassa HOM05D000001 ORTHO05D000424 1.2e-18 99.0 56 82.1
Peaxi162Scf00132g00037 Petunia axillaris HOM05D004790 ORTHO05D005678 2.7e-18 97.8 446 21.5
GSVIVG01029526001 Vitis vinifera HOM05D004790 ORTHO05D005678 2.7e-18 97.8 63 73.0
Hma1.2p1_0002F.1_g002210 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.5e-18 97.1 303 28.7
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 7.2e-16 89.7 76 55.3
Sabra13G0109000 Salix brachista HOM05D000001 ORTHO05D000424 1.2e-13 82.4 53 66.0
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 3.7e-12 77.4 183 33.9
Dinv07566 Davidia involucrata HOM05D004790 ORTHO05D005678 1.1e-11 75.9 184 26.6
Hma1.2p1_0002F.1_g002220 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.1e-11 75.9 59 59.3
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 1.4e-11 75.5 412 21.6
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 7.0e-11 73.2 130 33.1
Dinv17315 Davidia involucrata HOM05D004790 ORTHO05D005678 7.0e-11 73.2 85 40.0
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 2.5e-08 64.7 114 30.7
Dinv07569 Davidia involucrata HOM05D032653 ORTHO05D005678 1.4e-06 58.9 115 33.9
Hma1.2p1_0225F.1_g094730 Hydrangea macrophylla HOM05D000070 ORTHO05D003190 1.8e-06 58.5 151 27.8
Dinv17313 Davidia involucrata HOM05D032653 ORTHO05D185244 6.8e-06 56.6 172 25.0


User provided reference genes

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