Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G0185 Cannabis sativa HOM05D004690 ORTHO05D005527 1.0e-141 506.9 289 100.0
Prupe.7G265300 Prunus persica HOM05D004690 ORTHO05D005527 1.3e-91 340.5 289 65.4
Cfa020803 Carpinus fangiana HOM05D004690 ORTHO05D005527 1.5e-89 333.6 290 68.3
arahy.Tifrunner.gnm1.ann1.RJ6BPE Arachis hypogaea HOM05D004690 ORTHO05D005527 1.0e-88 330.9 289 66.4
arahy.Tifrunner.gnm1.ann1.VFXC0H Arachis hypogaea HOM05D004690 ORTHO05D005527 1.0e-88 330.9 289 66.8
CSS0047585 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 8.5e-88 327.8 292 65.4
CiPaw.16G107700 Carya illinoinensis HOM05D004690 ORTHO05D005527 1.4e-87 327.0 290 68.3
CiPaw.15G165900 Carya illinoinensis HOM05D004690 ORTHO05D005527 1.6e-86 323.6 259 68.7
RcHm_v2.0_Chr2g0085411 Rosa chinensis HOM05D004690 ORTHO05D005527 1.8e-85 320.1 289 66.4
Potri.018G104000 Populus trichocarpa HOM05D004690 ORTHO05D005527 3.9e-85 318.9 296 61.8
CSS0044573 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 8.8e-85 317.8 292 62.7
Cpa.g.sc46.177 Carica papaya HOM05D004690 ORTHO05D005527 2.0e-84 316.6 290 64.1
Lj4g0007308 Lotus japonicus HOM05D004690 ORTHO05D005527 4.3e-84 315.5 291 67.0
Manes.14G143400 Manihot esculenta HOM05D004690 ORTHO05D005527 4.3e-84 315.5 292 62.3
TAR383G0346 Trochodendron aralioides HOM05D004690 ORTHO05D005527 7.4e-84 314.7 289 63.7
Ciclev10009165m.g Citrus clementina HOM05D004690 ORTHO05D005527 9.7e-84 314.3 271 64.9
Nn2g12436 Nelumbo nucifera HOM05D004690 ORTHO05D005527 4.8e-83 312.0 289 59.9
COL.COLO4_23958 Corchorus olitorius HOM05D004690 ORTHO05D005527 1.1e-82 310.8 289 63.0
Thecc.09G151500 Theobroma cacao HOM05D004690 ORTHO05D005527 1.8e-82 310.1 289 61.9
GSVIVG01023642001 Vitis vinifera HOM05D004690 ORTHO05D005527 3.1e-82 309.3 291 60.5
FvH4_1g00690 Fragaria vesca HOM05D004690 ORTHO05D005527 4.1e-82 308.9 290 64.8
Gohir.A07G037900 Gossypium hirsutum HOM05D004690 ORTHO05D005527 5.3e-82 308.5 290 60.3
Gorai.001G044800 Gossypium raimondii HOM05D004690 ORTHO05D005527 5.3e-82 308.5 290 60.3
Phvul.003G154700 Phaseolus vulgaris HOM05D004690 ORTHO05D005527 5.3e-82 308.5 288 60.8
Gohir.D07G042000 Gossypium hirsutum HOM05D004690 ORTHO05D005527 1.2e-81 307.4 290 60.0
VMungo1215G2193 Vigna mungo HOM05D004690 ORTHO05D005527 1.5e-81 307.0 290 65.2
Eucgr.C02505 Eucalyptus grandis HOM05D004690 ORTHO05D005527 2.0e-81 306.6 289 62.6
FAN26G1928 Fragaria x ananassa HOM05D004690 ORTHO05D005527 7.7e-81 304.7 292 64.0
Hma1.2p1_0028F.1_g017650 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 3.8e-80 302.4 293 58.7
MD02G1005700 Malus domestica HOM05D004690 ORTHO05D005527 1.1e-79 300.8 292 61.0
Lalb_Chr12g0198781 Lupinus albus HOM05D004690 ORTHO05D005527 1.9e-79 300.1 288 63.9
Sed0014938 Sechium edule HOM05D004690 ORTHO05D005527 2.7e-78 296.2 302 55.6
MSTRG.10705 Avicennia marina HOM05D004690 ORTHO05D005527 4.7e-78 295.4 289 60.6
Atru.chr7.16 Acer truncatum HOM05D004690 ORTHO05D005527 6.1e-78 295.0 216 75.9
PGSC0003DMG400011147 Solanum tuberosum HOM05D004690 ORTHO05D005527 1.0e-77 294.3 292 62.3
Glyma.02G205700 Glycine max HOM05D004690 ORTHO05D005527 1.4e-77 293.9 272 68.0
PGR102G1430 Punica granatum HOM05D004690 ORTHO05D005527 1.4e-77 293.9 272 62.5
TWI63G1092 Tripterygium wilfordii HOM05D004690 ORTHO05D005527 1.4e-77 293.9 290 59.3
Dinv42835 Davidia involucrata HOM05D004690 ORTHO05D005527 2.3e-77 293.1 273 63.7
Dinv43264 Davidia involucrata HOM05D004690 ORTHO05D005527 2.3e-77 293.1 273 63.7
Solyc07g005830.3 Solanum lycopersicum HOM05D004690 ORTHO05D005527 1.5e-76 290.4 292 61.6
Sopen07g001930 Solanum pennellii HOM05D004690 ORTHO05D005527 1.5e-76 290.4 292 61.6
Haze_19160 Corylus avellana HOM05D004690 ORTHO05D005527 2.0e-76 290.0 323 56.7
CsaV3_2G007620 Cucumis sativus L. HOM05D004690 ORTHO05D005527 2.6e-76 289.7 270 58.9
Sed0017216 Sechium edule HOM05D004690 ORTHO05D005527 3.3e-76 289.3 201 74.1
Glyma.17G072300 Glycine max HOM05D004690 ORTHO05D005527 5.7e-76 288.5 273 63.4
ATR0019G027 Amborella trichopoda HOM05D004690 ORTHO05D005527 2.4e-74 283.1 197 76.1
PSO111G0014 Papaver somniferum HOM05D004690 ORTHO05D005527 4.1e-74 282.3 295 57.6
BcaB06g27964 Brassica carinata HOM05D004690 ORTHO05D005527 7.0e-74 281.6 283 58.7
Migut.K00308 Erythranthe guttata HOM05D004690 ORTHO05D005527 7.0e-74 281.6 289 61.6
Peaxi162Scf00401g00330 Petunia axillaris HOM05D004690 ORTHO05D005527 1.5e-73 280.4 290 62.4
Thhalv10000269m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 2.0e-73 280.0 285 60.4
unitig_899.g15465 Utricularia gibba HOM05D004690 ORTHO05D005527 2.0e-73 280.0 241 65.1
FAN28G2863 Fragaria x ananassa HOM05D004690 ORTHO05D005527 2.6e-73 279.6 290 61.4
PSO782G2525 Papaver somniferum HOM05D004690 ORTHO05D005527 2.6e-73 279.6 295 57.3
AT2G24060 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 3.5e-73 279.3 273 57.5
Carub.0004s0323 Capsella rubella HOM05D004690 ORTHO05D005527 1.3e-72 277.3 290 58.3
BraA04t17449Z Brassica rapa HOM05D004690 ORTHO05D005527 2.2e-72 276.6 280 59.3
Aa31LG7G12770 Aethionema arabicum HOM05D004690 ORTHO05D005527 2.9e-72 276.2 295 56.6
A03p60250 Brassica napus HOM05D004690 ORTHO05D005527 5.0e-72 275.4 288 58.0
MD15G1150400 Malus domestica HOM05D004690 ORTHO05D005527 5.0e-72 275.4 227 67.4
Sp4g02970 Schrenkiella parvula HOM05D004690 ORTHO05D005527 6.5e-72 275.0 284 58.5
BcaNung02747 Brassica carinata HOM05D004690 ORTHO05D005527 8.5e-72 274.6 289 58.8
C07p58160 Brassica napus HOM05D004690 ORTHO05D005527 8.5e-72 274.6 289 58.8
BolC7t46275H Brassica oleracea HOM05D004690 ORTHO05D005527 8.5e-72 274.6 289 58.8
CARHR118290 Cardamine hirsuta HOM05D004690 ORTHO05D005527 1.1e-71 274.2 294 54.4
AL4G14110 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 1.4e-71 273.9 291 55.3
BcaC02g08501 Brassica carinata HOM05D004690 ORTHO05D005527 1.4e-71 273.9 280 59.3
HanXRQChr05g0138951 Helianthus annuus HOM05D004690 ORTHO05D005527 1.4e-71 273.9 259 60.6
FAN23G2407 Fragaria x ananassa HOM05D004690 ORTHO05D005527 2.5e-71 273.1 289 60.6
FAN23G2925 Fragaria x ananassa HOM05D004690 ORTHO05D005527 2.5e-71 273.1 289 60.6
HanXRQChr10g0307591 Helianthus annuus HOM05D004690 ORTHO05D005527 2.5e-71 273.1 234 66.7
Sp7g28600 Schrenkiella parvula HOM05D004690 ORTHO05D005527 4.2e-71 272.3 269 59.5
BraA03t15065Z Brassica rapa HOM05D004690 ORTHO05D005527 7.2e-71 271.6 289 58.1
CARHR238570 Cardamine hirsuta HOM05D004690 ORTHO05D005527 7.2e-71 271.6 292 58.6
Sabra18G0089400 Salix brachista HOM05D004690 ORTHO05D005527 7.2e-71 271.6 294 55.8
AT4G30690 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 1.2e-70 270.8 272 57.7
Glyma.04G154000 Glycine max HOM05D004690 ORTHO05D005527 1.6e-70 270.4 204 68.6
BolC4t26921H Brassica oleracea HOM05D004690 ORTHO05D005527 3.6e-70 269.2 281 59.1
Medtr4g130530 Medicago truncatula HOM05D004690 ORTHO05D005527 3.6e-70 269.2 296 55.4
Aqoxy7G03362 Aquilegia oxysepala HOM05D004690 ORTHO05D005527 6.1e-70 268.5 200 72.5
THA.LOC104803547 Tarenaya hassleriana HOM05D004690 ORTHO05D005527 6.1e-70 268.5 295 54.9
C04p53650 Brassica napus HOM05D004690 ORTHO05D005527 1.0e-69 267.7 281 58.7
Lsat_1_v5_gn_8_63881 Lactuca sativa HOM05D004690 ORTHO05D005527 1.0e-69 267.7 261 59.0
A04p18380 Brassica napus HOM05D004690 ORTHO05D005527 1.8e-69 266.9 281 58.7
ECA234G3490 Erigeron canadensis HOM05D004690 ORTHO05D005527 6.7e-69 265.0 275 60.7
Lsat_1_v5_gn_5_89380 Lactuca sativa HOM05D004690 ORTHO05D005527 6.7e-69 265.0 282 54.6
Cc06_g14700 Coffea canephora HOM05D004690 ORTHO05D005527 1.1e-68 264.2 289 62.6
Thhalv10025935m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 1.1e-68 264.2 193 73.6
Hma1.2p1_0222F.1_g093770 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 2.6e-68 263.1 293 54.6
Psat7g006440 Pisum sativum HOM05D004690 ORTHO05D005527 9.7e-68 261.2 292 53.8
QL02p093831 Quercus lobata HOM05D004690 ORTHO05D005527 2.8e-67 259.6 237 65.8
SalBow1G0331 Salvia bowleyana HOM05D004690 ORTHO05D005527 3.7e-67 259.2 265 60.4
DCAR_017916 Daucus carota HOM05D004690 ORTHO05D005527 4.8e-67 258.8 294 51.7
Potri.006G182000 Populus trichocarpa HOM05D004690 ORTHO05D005527 8.2e-67 258.1 236 61.9
Sc18g0003050 Simmondsia chinensis HOM05D004690 ORTHO05D005527 4.1e-66 255.8 302 57.0
ECA236G1766 Erigeron canadensis HOM05D004690 ORTHO05D005527 5.3e-66 255.4 229 65.5
SGA_v2.0_scaffold63G21785 Striga asiatica HOM05D004690 ORTHO05D005527 1.6e-65 253.8 274 54.0
MELO3C004125.2 Cucumis melo HOM05D004690 ORTHO05D005527 2.0e-65 253.4 267 54.7
Ah.09g228780 Amaranthus hybridus HOM05D004690 ORTHO05D005527 7.7e-65 251.5 301 54.2
AL7G21430 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 1.0e-64 251.1 276 58.0
ClCG02G014380 Citrullus lanatus HOM05D004690 ORTHO05D005527 2.2e-64 250.0 260 55.0
Nitab4.5_0002611g0030 Nicotiana tabacum HOM05D004690 ORTHO05D005527 5.0e-64 248.8 175 74.9
BcaNung04824 Brassica carinata HOM05D004690 ORTHO05D005527 1.5e-63 247.3 186 70.4
EL10Ac8g18927 Beta vulgaris HOM05D004690 ORTHO05D005527 7.2e-63 245.0 249 57.8
vmacro16787 Vaccinium macrocarpon HOM05D004690 ORTHO05D005527 7.2e-63 245.0 347 46.1
Aa31LG2G19730 Aethionema arabicum HOM05D004690 ORTHO05D005527 2.1e-62 243.4 277 53.8
CAN.G160.27 Capsicum annuum HOM05D004690 ORTHO05D005527 4.7e-62 242.3 175 76.0
CDE02G3377 Ceratophyllum demersum HOM05D004690 ORTHO05D005527 4.7e-62 242.3 254 55.5
MBI15_g27186_MAGBIO Magnolia biondii HOM05D004690 ORTHO05D005527 1.2e-60 237.7 293 51.9
Rhsim01G0027300 Rhododendron simsii HOM05D004690 ORTHO05D005527 6.3e-59 231.9 276 54.7
Oeu054265.1 Olea europaea HOM05D004690 ORTHO05D005527 8.3e-59 231.5 155 78.1
Lj7C462G3 Lonicera japonica HOM05D000062 ORTHO05D000043 4.5e-57 225.7 227 57.3
HPP92_018341 Vanilla planifolia HOM05D004690 ORTHO05D005527 1.3e-56 224.2 208 58.2
Hund08935 Selenicereus undatus HOM05D004690 ORTHO05D005527 3.8e-56 222.6 265 51.3
Zm00001eb257720 Zea mays HOM05D004690 ORTHO05D005527 8.5e-56 221.5 191 61.8
Duzib150G0069 Durio zibethinus HOM05D004690 ORTHO05D005527 4.7e-54 215.7 289 49.5
CDE05G2888 Ceratophyllum demersum HOM05D004690 ORTHO05D005527 5.7e-52 208.8 191 59.2
Os02g0794400 Oryza sativa ssp. japonica HOM05D004690 ORTHO05D005527 7.5e-52 208.4 187 62.6
AUR62025348 Chenopodium quinoa HOM05D004690 ORTHO05D005527 2.8e-51 206.5 299 45.5
AUR62028351 Chenopodium quinoa HOM05D004690 ORTHO05D005527 1.4e-50 204.1 282 45.4
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 5.0e-48 195.7 216 50.0
Nn8g39977 Nelumbo nucifera HOM05D004690 ORTHO05D005527 3.3e-47 193.0 140 72.1
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 2.2e-43 180.3 180 55.0
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 1.8e-42 177.2 227 46.7
Aa31LG3G8690 Aethionema arabicum HOM05D004690 ORTHO05D005527 9.2e-42 174.9 120 70.8
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 7.8e-41 171.8 167 52.1
Manes.06G030800 Manihot esculenta HOM05D004690 ORTHO05D005527 2.3e-40 170.2 113 78.8
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 1.9e-39 167.2 192 46.4
Ca_21146_v3 Cicer arietinum L. HOM05D004690 ORTHO05D005527 2.3e-37 160.2 108 75.0
SMO353G0310 Selaginella moellendorffii HOM05D004690 ORTHO05D005527 1.7e-35 154.1 291 41.2
MCO15G501 Micromonas commoda HOM05D004690 ORTHO05D005527 7.0e-34 148.7 169 45.0
Actinidia24377 Actinidia chinensis HOM05D004690 ORTHO05D005527 1.9e-31 140.6 108 72.2
Actinidia38313 Actinidia chinensis HOM05D004690 ORTHO05D005527 4.3e-31 139.4 240 42.9
PRCOL_00002519 Prasinoderma coloniale HOM05D004690 ORTHO05D005527 4.4e-28 129.4 178 37.6
Carub.0007s0984 Capsella rubella HOM05D004690 ORTHO05D005527 3.7e-27 126.3 201 46.8
PGSC0003DMG400017027 Solanum tuberosum HOM05D004690 ORTHO05D005527 2.1e-25 120.6 67 85.1
SEGI_13735 Sequoiadendron giganteum HOM05D004690 ORTHO05D005527 2.3e-24 117.1 123 48.8
Hma1.2p1_0028F.1_g017670 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 1.9e-23 114.0 157 48.4
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 3.6e-22 109.8 97 57.7
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 1.5e-20 104.4 159 35.8
Nn8g39976 Nelumbo nucifera HOM05D004690 ORTHO05D005527 7.6e-20 102.1 147 49.7
HanXRQChr10g0314901 Helianthus annuus HOM05D000214 ORTHO05D000131 1.0e-16 91.7 85 60.0
Cre01.g001550 Chlamydomonas reinhardtii HOM05D004690 ORTHO05D005527 1.6e-14 84.3 147 32.0
BcaB06g27963 Brassica carinata HOM05D004690 ORTHO05D005527 8.1e-14 82.0 66 60.6
Dinv41359 Davidia involucrata HOM05D004690 ORTHO05D005527 1.8e-13 80.9 79 58.2
FAN23G1872 Fragaria x ananassa HOM05D004690 ORTHO05D005527 5.2e-13 79.3 137 48.9
SEGI_33455 Sequoiadendron giganteum HOM05D004690 ORTHO05D005527 5.8e-12 75.9 60 61.7
Ca_21142_v3 Cicer arietinum L. HOM05D004690 ORTHO05D005527 3.8e-11 73.2 136 39.7
SMO171G0119 Selaginella moellendorffii HOM05D005442 ORTHO05D006450 1.2e-09 68.2 177 35.0
Oeu054266.1 Olea europaea HOM05D004690 ORTHO05D005527 2.7e-09 67.0 47 70.2
AagrBONN_evm.TU.Sc2ySwM_344.3952 Anthoceros agrestis HOM05D005442 ORTHO05D006450 3.5e-09 66.6 179 27.9
Aa31LG8G14120 Aethionema arabicum HOM05D005442 ORTHO05D006450 7.8e-09 65.5 193 25.9
CBR_g29438 Chara braunii HOM05D005442 ORTHO05D006450 7.8e-09 65.5 136 33.1
Mapoly0037s0141 Marchantia polymorpha HOM05D005442 ORTHO05D006450 1.3e-08 64.7 119 35.3
Pp3c27_2790 Physcomitrium patens HOM05D005442 ORTHO05D006450 1.7e-08 64.3 182 25.3
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 3.9e-08 63.2 127 33.1
A02p43620 Brassica napus HOM05D004690 ORTHO05D005527 6.6e-08 62.4 44 63.6
A02p43630 Brassica napus HOM05D004690 ORTHO05D005527 6.6e-08 62.4 44 63.6
Pp3c16_14950 Physcomitrium patens HOM05D005442 ORTHO05D006450 8.7e-08 62.0 172 24.4
THA.LOC104807379 Tarenaya hassleriana HOM05D005442 ORTHO05D006450 1.5e-07 61.2 199 27.1
MSTRG.16924 Avicennia marina HOM05D005442 ORTHO05D006450 2.5e-07 60.5 162 29.6
Migut.B00066 Erythranthe guttata HOM05D005442 ORTHO05D006450 2.5e-07 60.5 188 24.5
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 3.3e-07 60.1 127 32.3
TWI31G1375 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 3.3e-07 60.1 186 25.3
BolC2t11481H Brassica oleracea HOM05D004690 ORTHO05D005527 4.3e-07 59.7 38 71.1
Phvul.007G018400 Phaseolus vulgaris HOM05D005442 ORTHO05D006450 9.6e-07 58.5 154 29.9
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 3.6e-06 56.6 174 28.2
Medtr7g017820 Medicago truncatula HOM05D004690 ORTHO05D005527 3.6e-06 56.6 33 81.8
Dinv41924 Davidia involucrata HOM05D005442 ORTHO05D006450 4.8e-06 56.2 127 31.5
Atru.chr5.3384 Acer truncatum HOM05D005442 ORTHO05D006450 6.2e-06 55.8 127 28.3
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 6.2e-06 55.8 176 27.8
FvH4_2g15550 Fragaria vesca HOM05D005442 ORTHO05D006450 6.2e-06 55.8 113 31.9
FAN15G0807 Fragaria x ananassa HOM05D005442 ORTHO05D006450 6.2e-06 55.8 113 31.9
FAN24G2500 Fragaria x ananassa HOM05D005442 ORTHO05D006450 6.2e-06 55.8 113 31.9
Gohir.A03G205700 Gossypium hirsutum HOM05D005442 ORTHO05D006450 6.2e-06 55.8 159 25.2
Lalb_Chr06g0163701 Lupinus albus HOM05D005442 ORTHO05D006450 6.2e-06 55.8 204 25.5
Glyma.10G282700 Glycine max HOM05D005442 ORTHO05D006450 8.1e-06 55.5 174 31.0
MCO13G079 Micromonas commoda HOM05D005442 ORTHO05D006450 8.1e-06 55.5 103 31.1


User provided reference genes

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