Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G0172 Cannabis sativa HOM05D005827 ORTHO05D005864 5.0e-66 254.6 159 100.0
FAN18G4374 Fragaria x ananassa HOM05D005827 ORTHO05D005864 1.7e-45 186.4 129 76.0
FAN08G1793 Fragaria x ananassa HOM05D005827 ORTHO05D005864 2.2e-45 186.0 129 76.0
FAN13G0291 Fragaria x ananassa HOM05D005827 ORTHO05D005864 2.2e-45 186.0 129 76.0
RcHm_v2.0_Chr7g0222441 Rosa chinensis HOM05D005827 ORTHO05D005864 1.1e-44 183.7 130 76.9
FvH4_5g29540 Fragaria vesca HOM05D005827 ORTHO05D005864 1.4e-44 183.3 129 76.0
Atru.chr5.2579 Acer truncatum HOM05D005827 ORTHO05D005864 3.2e-44 182.2 160 66.2
FAN04G0262 Fragaria x ananassa HOM05D005827 ORTHO05D005864 5.4e-44 181.4 129 75.2
MD15G1423200 Malus domestica HOM05D005827 ORTHO05D005864 9.2e-44 180.6 160 68.1
Prupe.1G568500 Prunus persica HOM05D005827 ORTHO05D005864 3.5e-43 178.7 160 64.4
Duzib132G0170 Durio zibethinus HOM05D005827 ORTHO05D005864 7.8e-43 177.6 131 73.3
Dinv15756 Davidia involucrata HOM05D005827 ORTHO05D005864 1.0e-42 177.2 130 73.8
Manes.10G074300 Manihot esculenta HOM05D005827 ORTHO05D005864 1.0e-42 177.2 131 74.8
Eucgr.G01363 Eucalyptus grandis HOM05D005827 ORTHO05D005864 5.0e-42 174.9 130 70.0
Thecc.02G106700 Theobroma cacao HOM05D005827 ORTHO05D005864 5.0e-42 174.9 131 72.5
CSS0006486 Camellia sinensis var. sinensis HOM05D005827 ORTHO05D005864 8.6e-42 174.1 160 60.0
Potri.009G097000 Populus trichocarpa HOM05D005827 ORTHO05D005864 1.1e-41 173.7 130 73.8
Hma1.2p1_0796F.1_g219120 Hydrangea macrophylla HOM05D005827 ORTHO05D005864 4.3e-41 171.8 131 71.8
Gorai.005G235500 Gossypium raimondii HOM05D005827 ORTHO05D005864 5.6e-41 171.4 130 70.8
vmacro14445 Vaccinium macrocarpon HOM05D005827 ORTHO05D005864 1.6e-40 169.9 130 69.2
Haze_10160 Corylus avellana HOM05D005827 ORTHO05D005864 8.1e-40 167.5 120 74.2
CiPaw.06G170100 Carya illinoinensis HOM05D005827 ORTHO05D005864 1.4e-39 166.8 130 73.1
Gohir.A03G186800 Gossypium hirsutum HOM05D005827 ORTHO05D005864 1.8e-39 166.4 130 69.2
CAN.G517.16 Capsicum annuum HOM05D005827 ORTHO05D005864 5.2e-39 164.9 120 70.0
Peaxi162Scf00880g00322 Petunia axillaris HOM05D005827 ORTHO05D005864 5.2e-39 164.9 130 66.2
COL.COLO4_32605 Corchorus olitorius HOM05D005827 ORTHO05D005864 8.9e-39 164.1 165 65.5
QL11p034047 Quercus lobata HOM05D005827 ORTHO05D005864 8.9e-39 164.1 132 69.7
Gohir.D02G207600 Gossypium hirsutum HOM05D005827 ORTHO05D005864 1.2e-38 163.7 130 69.2
Nitab4.5_0000209g0220 Nicotiana tabacum HOM05D005827 ORTHO05D005864 1.2e-38 163.7 130 66.2
QL11p033993 Quercus lobata HOM05D005827 ORTHO05D005864 1.5e-38 163.3 126 71.4
Rhsim11G0160600 Rhododendron simsii HOM05D005827 ORTHO05D005864 1.5e-38 163.3 130 68.5
Sopen12g028550 Solanum pennellii HOM05D005827 ORTHO05D005864 1.5e-38 163.3 130 66.2
Cc02_g19170 Coffea canephora HOM05D005827 ORTHO05D005864 4.4e-38 161.8 131 65.6
Solyc12g056030.2 Solanum lycopersicum HOM05D005827 ORTHO05D005864 5.8e-38 161.4 130 65.4
PGSC0003DMG400005012 Solanum tuberosum HOM05D005827 ORTHO05D005864 1.3e-37 160.2 130 64.6
DCAR_029081 Daucus carota HOM05D005827 ORTHO05D005864 3.7e-37 158.7 130 65.4
Nitab4.5_0011210g0030 Nicotiana tabacum HOM05D000771 ORTHO05D005864 4.9e-37 158.3 130 63.8
TAR625G0497 Trochodendron aralioides HOM05D005827 ORTHO05D005864 6.4e-37 157.9 161 64.6
TAR625G1254 Trochodendron aralioides HOM05D005827 ORTHO05D005864 6.4e-37 157.9 161 64.6
ECA234G2840 Erigeron canadensis HOM05D005827 ORTHO05D005864 1.4e-36 156.8 130 66.2
HanXRQChr16g0514881 Helianthus annuus HOM05D005827 ORTHO05D005864 3.2e-36 155.6 158 58.2
Nitab4.5_0001647g0080 Nicotiana tabacum HOM05D005827 ORTHO05D005864 1.6e-35 153.3 130 63.8
THA.LOC104823732 Tarenaya hassleriana HOM05D005827 ORTHO05D005864 1.6e-35 153.3 132 64.4
PGR042G1992 Punica granatum HOM05D005827 ORTHO05D005864 3.5e-35 152.1 131 64.1
A02p32240 Brassica napus HOM05D005827 ORTHO05D005864 4.6e-35 151.8 132 61.4
BraA02t08240Z Brassica rapa HOM05D005827 ORTHO05D005864 4.6e-35 151.8 132 61.4
BcaC03g17064 Brassica carinata HOM05D005827 ORTHO05D005864 6.0e-35 151.4 132 61.4
GSVIVG01003168001 Vitis vinifera HOM05D005827 ORTHO05D005864 6.0e-35 151.4 124 68.5
Nn1g04717 Nelumbo nucifera HOM05D005827 ORTHO05D005864 7.8e-35 151.0 126 63.5
Sabra09G0074500 Salix brachista HOM05D005827 ORTHO05D005864 1.0e-34 150.6 156 57.1
Lsat_1_v5_gn_5_114720 Lactuca sativa HOM05D005827 ORTHO05D005864 1.3e-34 150.2 128 65.6
BcaB07g30381 Brassica carinata HOM05D005827 ORTHO05D005864 1.7e-34 149.8 132 61.4
BolC2t11063H Brassica oleracea HOM05D005827 ORTHO05D005864 1.7e-34 149.8 132 60.6
AUR62010278 Chenopodium quinoa HOM05D005827 ORTHO05D005864 1.7e-34 149.8 131 64.1
C02p49840 Brassica napus HOM05D005827 ORTHO05D005864 2.3e-34 149.4 132 60.6
PSO170G4182 Papaver somniferum HOM05D005827 ORTHO05D005864 2.3e-34 149.4 124 63.7
Cpa.g.sc246.10 Carica papaya HOM05D005827 ORTHO05D005864 5.1e-34 148.3 131 64.1
AT2G01640 Arabidopsis thaliana HOM05D005827 ORTHO05D005864 1.1e-33 147.1 131 62.6
Sp2g13090 Schrenkiella parvula HOM05D005827 ORTHO05D005864 1.5e-33 146.7 132 59.8
EL10Ac9g22299 Beta vulgaris HOM05D005827 ORTHO05D005864 1.9e-33 146.4 131 62.6
Carub.0005s0059 Capsella rubella HOM05D005827 ORTHO05D005864 1.9e-33 146.4 132 60.6
CsaV3_4G029930 Cucumis sativus L. HOM05D005827 ORTHO05D005864 3.3e-33 145.6 130 62.3
MSTRG.27741 Avicennia marina HOM05D005827 ORTHO05D005864 5.6e-33 144.8 130 60.0
AL5G10740 Arabidopsis lyrata HOM05D005827 ORTHO05D005864 7.3e-33 144.4 126 62.7
Sc08g0001470 Simmondsia chinensis HOM05D005827 ORTHO05D005864 7.3e-33 144.4 131 64.9
Sabra09G0074600 Salix brachista HOM05D005827 ORTHO05D005864 9.5e-33 144.1 129 62.8
Sed0003004 Sechium edule HOM05D005827 ORTHO05D005864 2.1e-32 142.9 131 63.4
Migut.N01172 Erythranthe guttata HOM05D005827 ORTHO05D005864 4.7e-32 141.7 132 60.6
Lj9A321T79 Lonicera japonica HOM05D005827 ORTHO05D005864 4.7e-32 141.7 168 51.2
PSO210G1068 Papaver somniferum HOM05D005827 ORTHO05D005864 6.2e-32 141.4 124 62.9
Eucgr.H03226 Eucalyptus grandis HOM05D005827 ORTHO05D005864 4.0e-31 138.7 107 68.2
ClCG04G002790 Citrullus lanatus HOM05D005827 ORTHO05D005864 3.4e-30 135.6 124 58.9
MD08G1229200 Malus domestica HOM05D005827 ORTHO05D005864 4.4e-30 135.2 133 54.1
Aqoxy5G03364 Aquilegia oxysepala HOM05D005827 ORTHO05D005864 1.3e-29 133.7 121 61.2
Lalb_Chr21g0308391 Lupinus albus HOM05D005827 ORTHO05D005864 8.4e-29 131.0 132 53.8
SalBow3G3341 Salvia bowleyana HOM05D005827 ORTHO05D005864 8.4e-29 131.0 139 53.2
Ca_30413_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 5.4e-28 128.3 135 57.0
Thhalv10005665m.g Eutrema salsugineum HOM05D005827 ORTHO05D005864 7.1e-28 127.9 154 50.0
TWI31G0230 Tripterygium wilfordii HOM05D005827 ORTHO05D005864 7.1e-28 127.9 122 62.3
Actinidia00415 Actinidia chinensis HOM05D005827 ORTHO05D005864 2.7e-27 125.9 100 72.0
Aa31LG2G8260 Aethionema arabicum HOM05D005827 ORTHO05D005864 2.7e-27 125.9 131 54.2
CDE01G0172 Ceratophyllum demersum HOM05D005827 ORTHO05D005864 2.7e-27 125.9 122 54.9
Ca_06388_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 2.7e-27 125.9 130 56.9
TAR381G1673 Trochodendron aralioides HOM05D005827 ORTHO05D005864 3.5e-27 125.6 106 67.0
Os12g0244500 Oryza sativa ssp. japonica HOM05D005827 ORTHO05D005864 6.0e-27 124.8 124 57.3
arahy.Tifrunner.gnm1.ann1.M92LVR Arachis hypogaea HOM05D005827 ORTHO05D005864 3.0e-26 122.5 122 54.9
arahy.Tifrunner.gnm1.ann1.HL4A43 Arachis hypogaea HOM05D005827 ORTHO05D005864 5.1e-26 121.7 122 54.1
Phvul.007G038800 Phaseolus vulgaris HOM05D005827 ORTHO05D005864 1.1e-25 120.6 133 54.1
Ciclev10030223m.g Citrus clementina HOM05D005827 ORTHO05D005864 1.9e-25 119.8 88 71.6
Zm00001eb133530 Zea mays HOM05D005827 ORTHO05D005864 1.2e-24 117.1 120 54.2
MELO3C003274.2 Cucumis melo HOM05D005827 ORTHO05D005864 2.1e-24 116.3 103 62.1
Hund00127 Selenicereus undatus HOM05D005827 ORTHO05D005864 2.8e-24 115.9 100 64.0
HPP92_026144 Vanilla planifolia HOM05D005827 ORTHO05D005864 4.7e-24 115.2 129 49.6
Glyma.12G113700 Glycine max HOM05D005827 ORTHO05D005864 1.1e-23 114.0 133 51.9
SGA_v2.0_scaffold42G16001 Striga asiatica HOM05D005827 ORTHO05D005864 1.4e-23 113.6 130 48.5
Hund00128 Selenicereus undatus HOM05D005827 ORTHO05D005864 3.1e-23 112.5 101 61.4
SGA_v2.0_scaffold393G50707 Striga asiatica HOM05D005827 ORTHO05D005864 1.3e-21 107.1 123 47.2
Nn2g12688 Nelumbo nucifera HOM05D005827 ORTHO05D005864 3.8e-21 105.5 88 65.9
Glyma.20G127400 Glycine max HOM05D005827 ORTHO05D005864 4.9e-21 105.1 123 50.4
CANSAT25G3357 Cannabis sativa HOM05D005827 ORTHO05D005864 9.3e-20 100.9 82 82.9
Psat6g219720 Pisum sativum HOM05D005827 ORTHO05D005864 3.5e-19 99.0 136 46.3
ATR0827G109 Amborella trichopoda HOM05D005827 ORTHO05D005864 1.7e-18 96.7 103 50.5
Aa31sc215G30 Aethionema arabicum HOM05D005827 ORTHO05D005864 6.6e-18 94.7 89 56.2
MELO3C033554.2 Cucumis melo HOM05D005827 ORTHO05D005864 6.6e-18 94.7 129 46.5
QL11p034007 Quercus lobata HOM05D005827 ORTHO05D005864 1.9e-17 93.2 74 64.9
unitig_94.g28296 Utricularia gibba HOM05D005827 ORTHO05D005864 1.3e-16 90.5 131 41.2
unitig_94.g28309 Utricularia gibba HOM05D005827 ORTHO05D005864 1.3e-16 90.5 131 41.2
AUR62039111 Chenopodium quinoa HOM05D005827 ORTHO05D005864 2.8e-16 89.4 73 63.0
AUR62044681 Chenopodium quinoa HOM05D005827 ORTHO05D005864 2.8e-16 89.4 73 63.0
Lj5g0000760 Lotus japonicus HOM05D005827 ORTHO05D005864 2.8e-16 89.4 109 49.5
MD05G1087800 Malus domestica HOM05D005827 ORTHO05D005864 3.6e-16 89.0 96 51.0
Lj3g0023632 Lotus japonicus HOM05D005827 ORTHO05D005864 6.9e-15 84.7 79 55.7
CiPaw.07G088900 Carya illinoinensis HOM05D005827 ORTHO05D005864 4.4e-14 82.0 81 60.5
SEGI_38856 Sequoiadendron giganteum HOM05D005827 ORTHO05D005864 4.4e-14 82.0 122 44.3
TPR.G13876 Trifolium pratense HOM05D005827 ORTHO05D005864 4.4e-14 82.0 84 53.6
Zm00001eb207600 Zea mays HOM05D005827 ORTHO05D005864 4.4e-14 82.0 83 61.4
Zm00001eb350190 Zea mays HOM05D005827 ORTHO05D005864 9.9e-14 80.9 84 61.9
ATR0691G195 Amborella trichopoda HOM05D005827 ORTHO05D005864 1.7e-13 80.1 79 51.9
Zm00001eb324360 Zea mays HOM05D005827 ORTHO05D005864 2.2e-13 79.7 106 50.9
Zm00001eb006370 Zea mays HOM05D005827 ORTHO05D005864 3.8e-13 79.0 84 57.1
SMO364G0308 Selaginella moellendorffii HOM05D005827 ORTHO05D000003 6.4e-13 78.2 114 41.2
Pp3c21_2370 Physcomitrium patens HOM05D005827 ORTHO05D005864 1.1e-12 77.4 119 39.5
Zm00001eb259520 Zea mays HOM05D005827 ORTHO05D005864 1.4e-12 77.0 83 59.0
Zm00001eb324920 Zea mays HOM05D005827 ORTHO05D005864 5.4e-12 75.1 82 59.8
Medtr1g107495 Medicago truncatula HOM05D005827 ORTHO05D005864 1.6e-11 73.6 75 50.7
Zm00001eb091410 Zea mays HOM05D005827 ORTHO05D005864 1.6e-11 73.6 91 53.8
Mapoly0052s0016 Marchantia polymorpha HOM05D005827 ORTHO05D005864 2.7e-11 72.8 125 43.2
SMO364G0554 Selaginella moellendorffii HOM05D005827 ORTHO05D005864 7.9e-11 71.2 126 38.9
AagrBONN_evm.TU.Sc2ySwM_228.4380 Anthoceros agrestis HOM05D005827 ORTHO05D005864 8.1e-08 61.2 97 42.3
ClCG01G025500 Citrullus lanatus HOM05D005827 ORTHO05D005864 2.4e-07 59.7 113 36.3
Ah.01g018070 Amaranthus hybridus HOM05D007150 ORTHO05D008994 3.1e-07 59.3 39 66.7
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 2.6e-06 56.2 125 36.8
CARHR144210 Cardamine hirsuta HOM05D005827 ORTHO05D005864 5.8e-06 55.1 52 55.8


User provided reference genes

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