Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 1.8e-257 892.1 461 100.0
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 2.0e-200 702.6 453 78.4
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 4.5e-200 701.4 453 78.4
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.7e-199 699.5 453 77.9
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 5.7e-195 684.5 467 73.7
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 1.7e-194 682.9 455 74.9
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 1.8e-193 679.5 455 76.9
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 6.1e-189 664.5 456 74.1
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 1.4e-188 663.3 454 73.3
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 1.4e-188 663.3 455 73.0
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 2.3e-188 662.5 462 74.0
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 1.3e-186 656.8 456 73.0
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 3.7e-186 655.2 455 73.0
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 7.0e-185 651.0 454 72.9
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 3.5e-184 648.7 455 73.0
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 5.9e-184 647.9 456 72.8
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 7.7e-184 647.5 454 71.8
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 1.7e-183 646.4 453 72.4
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 1.7e-183 646.4 455 71.4
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 2.2e-183 646.0 456 72.6
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 2.2e-183 646.0 455 71.4
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 3.8e-183 645.2 454 71.4
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 6.5e-183 644.4 454 71.4
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 6.5e-183 644.4 454 71.4
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 8.5e-183 644.0 456 72.1
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 1.5e-182 643.3 454 70.9
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 7.2e-182 641.0 480 69.8
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 7.2e-182 641.0 480 69.8
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 1.2e-181 640.2 454 70.9
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 1.2e-181 640.2 452 70.4
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 1.6e-181 639.8 454 70.5
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 2.1e-181 639.4 454 70.5
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 2.1e-181 639.4 454 70.9
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 2.7e-181 639.0 453 71.5
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 3.6e-181 638.6 457 71.6
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 6.1e-181 637.9 456 71.5
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 1.4e-180 636.7 454 70.0
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 1.8e-180 636.3 457 71.8
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 1.8e-180 636.3 457 70.9
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 1.8e-180 636.3 455 68.6
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 2.3e-180 636.0 454 71.1
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 3.0e-180 635.6 453 70.0
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 5.2e-180 634.8 456 72.6
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 6.7e-180 634.4 456 70.8
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 6.7e-180 634.4 454 70.5
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 8.8e-180 634.0 454 70.5
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 8.8e-180 634.0 454 70.7
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 1.1e-179 633.6 454 71.1
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.5e-179 633.3 456 70.2
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 2.6e-179 632.5 454 70.3
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 4.4e-179 631.7 456 71.1
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 7.5e-179 630.9 457 71.3
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 7.5e-179 630.9 454 70.9
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 9.7e-179 630.6 458 71.8
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 2.2e-178 629.4 458 71.6
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 2.2e-178 629.4 454 70.0
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 2.8e-178 629.0 458 71.4
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 3.7e-178 628.6 405 76.5
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 4.8e-178 628.2 457 71.1
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 1.1e-177 627.1 455 70.5
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 1.1e-177 627.1 458 69.0
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 1.8e-177 626.3 457 68.5
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 2.4e-177 625.9 457 68.3
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 2.4e-177 625.9 471 67.7
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 5.3e-177 624.8 457 70.5
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 7.0e-177 624.4 452 69.7
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 9.1e-177 624.0 474 67.3
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 9.1e-177 624.0 452 69.9
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 1.6e-176 623.2 452 69.7
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 1.6e-176 623.2 452 69.7
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 1.6e-176 623.2 457 68.7
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 1.6e-176 623.2 456 68.9
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 2.0e-176 622.9 452 68.4
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 3.5e-176 622.1 456 69.5
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 4.5e-176 621.7 457 69.6
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 5.9e-176 621.3 455 70.8
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 7.7e-176 620.9 456 68.0
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 7.7e-176 620.9 456 68.0
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 1.0e-175 620.5 492 64.8
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.3e-175 620.2 457 69.8
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 8.5e-175 617.5 455 69.0
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 1.9e-174 616.3 457 68.9
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 2.5e-174 615.9 454 68.7
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 2.5e-174 615.9 476 67.4
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 4.2e-174 615.1 391 78.3
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 2.0e-171 606.3 465 66.2
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 2.2e-170 602.8 452 66.4
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 2.8e-170 602.4 431 71.0
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 1.8e-169 599.7 454 67.8
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 2.4e-169 599.4 473 66.6
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 2.7e-168 595.9 455 66.8
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 3.5e-168 595.5 442 66.7
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 3.5e-168 595.5 463 67.0
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 5.9e-168 594.7 477 63.5
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 2.2e-167 592.8 456 67.1
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.9e-167 592.4 457 65.9
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 2.1e-165 586.3 421 71.3
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 1.0e-164 583.9 457 65.0
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 2.6e-163 579.3 553 56.4
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 2.2e-162 576.2 471 63.1
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 2.2e-162 576.2 445 65.8
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 1.6e-160 570.1 463 62.4
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 2.0e-160 569.7 449 65.0
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 3.5e-160 568.9 400 72.5
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 2.8e-157 559.3 389 71.0
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 4.7e-157 558.5 457 62.8
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 6.6e-151 538.1 483 59.2
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 7.3e-150 534.6 482 58.7
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 1.2e-149 533.9 390 68.2
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 2.2e-146 523.1 433 61.2
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 5.0e-143 511.9 350 74.3
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 3.3e-142 509.2 403 63.3
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 4.3e-142 508.8 452 57.1
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 1.2e-139 500.7 448 57.6
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 2.4e-137 493.0 452 55.5
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 3.2e-137 492.7 384 63.8
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 2.1e-136 490.0 452 54.6
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.6e-133 480.3 444 61.7
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 3.4e-131 472.6 449 56.1
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 1.7e-130 470.3 454 57.5
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 2.2e-130 469.9 440 54.8
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 1.6e-128 463.8 316 73.4
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 2.6e-123 446.4 432 52.5
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 2.6e-123 446.4 396 57.1
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 3.2e-121 439.5 320 70.3
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 9.6e-118 427.9 457 49.2
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 4.8e-117 425.6 456 48.2
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 6.2e-117 425.2 456 48.5
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 8.4e-114 414.8 454 47.8
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.6e-104 384.0 271 72.7
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 6.7e-103 378.6 452 46.2
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.5e-97 360.1 399 49.6
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 4.2e-97 359.4 295 63.4
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 7.4e-94 348.6 251 67.3
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.4e-79 301.2 457 39.4
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 3.0e-79 300.1 315 55.6
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 4.7e-72 276.2 193 71.0
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 1.4e-68 264.6 456 38.8
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 5.5e-57 226.1 129 79.8
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 2.7e-56 223.8 177 63.8
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 3.0e-55 220.3 158 71.5
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.3e-50 204.9 155 63.9
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 1.2e-46 191.8 121 78.5
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 6.3e-45 186.0 140 67.1
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 2.5e-41 174.1 196 46.9
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 2.0e-30 137.9 136 55.9
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 7.5e-30 136.0 94 68.1
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.7e-26 124.8 122 57.4
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 3.0e-26 124.0 118 57.6
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 1.2e-24 118.6 72 75.0
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 3.2e-20 104.0 99 49.5
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 1.1e-17 95.5 72 61.1
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 2.1e-16 91.3 60 75.0
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 2.6e-14 84.3 58 69.0
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 1.6e-11 75.1 63 57.1
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 6.6e-10 69.7 88 48.9
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.6e-08 65.1 40 77.5
FvH4_5g06577 Fragaria vesca HOM05D000025 ORTHO05D000040 1.2e-06 58.9 37 78.4
Nitab4.5_0000468g0200 Nicotiana tabacum HOM05D004544 ORTHO05D283929 2.0e-06 58.2 176 30.7


User provided reference genes

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