Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G3286 Cannabis sativa HOM05D005654 ORTHO05D006438 4.3e-90 334.7 180 100.0
QL08p063081 Quercus lobata HOM05D005654 ORTHO05D006438 2.2e-62 242.7 185 73.5
QL06p034798 Quercus lobata HOM05D005654 ORTHO05D006438 6.1e-60 234.6 181 74.0
QL10p007390 Quercus lobata HOM05D005654 ORTHO05D006438 6.1e-60 234.6 181 74.0
RcHm_v2.0_Chr6g0277811 Rosa chinensis HOM05D005654 ORTHO05D006438 1.8e-59 233.0 186 72.6
FvH4_2g15150 Fragaria vesca HOM05D005654 ORTHO05D006438 2.6e-58 229.2 186 72.0
FAN07G1349 Fragaria x ananassa HOM05D005654 ORTHO05D006438 2.6e-58 229.2 185 71.9
THA.LOC104819191 Tarenaya hassleriana HOM05D005654 ORTHO05D006438 2.6e-58 229.2 184 66.8
GSVIVG01018856001 Vitis vinifera HOM05D005654 ORTHO05D006438 2.6e-58 229.2 185 71.9
Thecc.01G026300 Theobroma cacao HOM05D005654 ORTHO05D006438 1.7e-57 226.5 185 67.6
FAN17G0825 Fragaria x ananassa HOM05D005654 ORTHO05D006438 2.8e-57 225.7 185 71.4
CSS0048601 Camellia sinensis var. sinensis HOM05D005654 ORTHO05D006438 6.3e-57 224.6 183 69.9
FAN22G0080 Fragaria x ananassa HOM05D005654 ORTHO05D006438 8.2e-57 224.2 185 70.8
Lj2A460T79 Lonicera japonica HOM05D005654 ORTHO05D006438 8.2e-57 224.2 178 69.1
Sed0005955 Sechium edule HOM05D005654 ORTHO05D006438 1.4e-56 223.4 177 69.5
ClCG09G019610 Citrullus lanatus HOM05D005654 ORTHO05D006438 2.4e-56 222.6 182 70.9
Prupe.8G013400 Prunus persica HOM05D005654 ORTHO05D006438 2.4e-56 222.6 186 71.5
CiPaw.08G137200 Carya illinoinensis HOM05D005654 ORTHO05D006438 4.1e-56 221.9 181 67.4
COL.COLO4_21992 Corchorus olitorius HOM05D005654 ORTHO05D006438 9.1e-56 220.7 185 65.9
Haze_03832 Corylus avellana HOM05D005654 ORTHO05D006438 1.2e-55 220.3 180 66.7
Lalb_Chr06g0172541 Lupinus albus HOM05D005654 ORTHO05D006438 1.2e-55 220.3 190 65.8
FvH4_4g16440 Fragaria vesca HOM05D005654 ORTHO05D006438 1.3e-54 216.9 185 69.7
FAN12G4326 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.3e-54 216.9 185 69.7
Nn1g05784 Nelumbo nucifera HOM05D005654 ORTHO05D006438 1.3e-54 216.9 180 67.8
Hma1.2p1_1114F.1_g258780 Hydrangea macrophylla HOM05D005654 ORTHO05D006438 1.7e-54 216.5 186 66.7
Peaxi162Scf00329g00119 Petunia axillaris HOM05D005654 ORTHO05D006438 6.5e-54 214.5 185 65.4
Sabra07G0015400 Salix brachista HOM05D005654 ORTHO05D006438 1.9e-53 213.0 190 65.8
Lj3g0016616 Lotus japonicus HOM05D005654 ORTHO05D006438 2.5e-53 212.6 181 66.3
Dinv33576 Davidia involucrata HOM05D005654 ORTHO05D006438 5.5e-53 211.5 178 66.9
Eucgr.H02778 Eucalyptus grandis HOM05D005654 ORTHO05D006438 9.4e-53 210.7 184 65.2
Ca_14022_v3 Cicer arietinum L. HOM05D005654 ORTHO05D006438 1.2e-52 210.3 179 65.4
Gohir.D11G187100 Gossypium hirsutum HOM05D005654 ORTHO05D006438 1.2e-52 210.3 186 64.0
TWI60G0108 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 1.6e-52 209.9 191 63.9
Gorai.007G199000 Gossypium raimondii HOM05D005654 ORTHO05D006438 2.1e-52 209.5 187 63.1
Nitab4.5_0002707g0030 Nicotiana tabacum HOM05D005654 ORTHO05D006438 2.1e-52 209.5 187 65.2
Gohir.A11G179400 Gossypium hirsutum HOM05D005654 ORTHO05D006438 3.6e-52 208.8 185 63.8
Migut.H02503 Erythranthe guttata HOM05D005654 ORTHO05D006438 7.9e-52 207.6 180 64.4
Lj5g0021075 Lotus japonicus HOM05D005654 ORTHO05D006438 7.9e-52 207.6 177 64.4
MELO3C005244.2 Cucumis melo HOM05D005654 ORTHO05D006438 1.0e-51 207.2 180 65.6
Cc07_g10180 Coffea canephora HOM05D005654 ORTHO05D006438 1.4e-51 206.8 189 64.0
Glyma.13G002400 Glycine max HOM05D005654 ORTHO05D006438 1.4e-51 206.8 181 65.2
PGR119G1083 Punica granatum HOM05D005654 ORTHO05D006438 1.4e-51 206.8 190 63.7
Solyc04g008800.3 Solanum lycopersicum HOM05D005654 ORTHO05D006438 1.4e-51 206.8 186 64.5
MD05G1010700 Malus domestica HOM05D005654 ORTHO05D006438 3.0e-51 205.7 186 66.7
Thhalv10010748m.g Eutrema salsugineum HOM05D005654 ORTHO05D006438 3.9e-51 205.3 184 62.5
Nitab4.5_0007445g0010 Nicotiana tabacum HOM05D005654 ORTHO05D006438 5.2e-51 204.9 186 64.5
AT3G51010 Arabidopsis thaliana HOM05D005654 ORTHO05D006438 1.5e-50 203.4 185 63.2
TAR381G0206 Trochodendron aralioides HOM05D005654 ORTHO05D006438 1.5e-50 203.4 184 65.8
Sopen04g003980 Solanum pennellii HOM05D005654 ORTHO05D006438 2.0e-50 203.0 186 63.4
A09p44110 Brassica napus HOM05D000363 ORTHO05D006438 2.6e-50 202.6 180 64.4
Carub.0005s1741 Capsella rubella HOM05D005654 ORTHO05D006438 3.3e-50 202.2 185 62.2
CsaV3_5G027780 Cucumis sativus L. HOM05D005654 ORTHO05D006438 4.4e-50 201.8 180 63.9
VMungo0331G0515 Vigna mungo HOM05D005654 ORTHO05D006438 4.4e-50 201.8 171 65.5
Sp5g11200 Schrenkiella parvula HOM05D005654 ORTHO05D006438 7.4e-50 201.1 184 61.4
Phvul.010G058900 Phaseolus vulgaris HOM05D005654 ORTHO05D006438 9.7e-50 200.7 175 64.6
Actinidia26105 Actinidia chinensis HOM05D005654 ORTHO05D006438 1.3e-49 200.3 183 62.3
arahy.Tifrunner.gnm1.ann1.IV76VY Arachis hypogaea HOM05D005654 ORTHO05D006438 1.3e-49 200.3 202 58.9
BraA09t39870Z Brassica rapa HOM05D005654 ORTHO05D006438 1.3e-49 200.3 180 63.9
MSTRG.23266 Avicennia marina HOM05D005654 ORTHO05D006438 2.8e-49 199.1 179 61.5
CAN.G419.13 Capsicum annuum HOM05D005654 ORTHO05D006438 2.8e-49 199.1 191 61.8
Glyma.20G066700 Glycine max HOM05D005654 ORTHO05D006438 2.8e-49 199.1 181 64.1
Medtr8g077440 Medicago truncatula HOM05D005654 ORTHO05D006438 2.8e-49 199.1 181 63.0
PGSC0003DMG400025306 Solanum tuberosum HOM05D005654 ORTHO05D006438 3.7e-49 198.7 185 62.2
BcaC06g33063 Brassica carinata HOM05D005654 ORTHO05D006438 4.8e-49 198.4 181 62.4
MD10G1009400 Malus domestica HOM05D005654 ORTHO05D006438 6.3e-49 198.0 186 63.4
SalBow8G3171 Salvia bowleyana HOM05D005654 ORTHO05D006438 6.3e-49 198.0 181 61.3
C07p46090 Brassica napus HOM05D000363 ORTHO05D005000 8.2e-49 197.6 181 62.4
BolC7t45125H Brassica oleracea HOM05D000363 ORTHO05D005000 8.2e-49 197.6 181 62.4
AL5G31430 Arabidopsis lyrata HOM05D005654 ORTHO05D006438 1.1e-48 197.2 185 61.1
BraA03t13914Z Brassica rapa HOM05D000363 ORTHO05D005000 1.8e-48 196.4 181 63.0
Glyma.16G220800 Glycine max HOM05D005654 ORTHO05D006438 4.1e-48 195.3 177 61.6
Manes.02G099200 Manihot esculenta HOM05D005654 ORTHO05D006438 5.3e-48 194.9 188 60.6
A03p48070 Brassica napus HOM05D000363 ORTHO05D005000 2.6e-47 192.6 181 61.9
Manes.01G140500 Manihot esculenta HOM05D005654 ORTHO05D006438 2.6e-47 192.6 192 61.5
BcaNung00403 Brassica carinata HOM05D005654 ORTHO05D006438 3.5e-47 192.2 181 60.8
Lsat_1_v5_gn_9_115780 Lactuca sativa HOM05D005654 ORTHO05D006438 5.9e-47 191.4 185 61.1
BcaC07g39579 Brassica carinata HOM05D005654 ORTHO05D006438 1.7e-46 189.9 180 61.7
C08p26310 Brassica napus HOM05D005654 ORTHO05D006438 1.7e-46 189.9 180 61.7
BolC8t50249H Brassica oleracea HOM05D005654 ORTHO05D006438 5.0e-46 188.3 180 61.1
TPR.G24134 Trifolium pratense HOM05D005654 ORTHO05D006438 1.1e-45 187.2 177 62.1
Aa31LG4G19130 Aethionema arabicum HOM05D005654 ORTHO05D006438 1.9e-45 186.4 185 56.8
BcaB01g00554 Brassica carinata HOM05D005654 ORTHO05D006438 1.9e-45 186.4 182 59.3
MBI01_g45163_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 1.0e-43 180.6 193 57.0
PSO170G2173 Papaver somniferum HOM05D005654 ORTHO05D006438 1.0e-43 180.6 182 61.0
HanXRQChr10g0278901 Helianthus annuus HOM05D005654 ORTHO05D006438 2.3e-43 179.5 174 60.9
arahy.Tifrunner.gnm1.ann1.I9PPQ0 Arachis hypogaea HOM05D005654 ORTHO05D006438 6.7e-43 177.9 187 57.8
Oeu021744.2 Olea europaea HOM05D005654 ORTHO05D006438 6.7e-43 177.9 229 48.9
Oeu035320.1 Olea europaea HOM05D005654 ORTHO05D006438 8.8e-43 177.6 173 60.7
ECA248G0981 Erigeron canadensis HOM05D005654 ORTHO05D006438 1.2e-42 177.2 187 59.9
PSO528G0264 Papaver somniferum HOM05D005654 ORTHO05D006438 4.4e-42 175.3 181 59.7
Sc18g0007030 Simmondsia chinensis HOM05D005654 ORTHO05D006438 4.4e-42 175.3 196 58.2
Aqoxy6G01210 Aquilegia oxysepala HOM05D005654 ORTHO05D006438 5.7e-42 174.9 181 55.8
Lj4A211T64 Lonicera japonica HOM05D005654 ORTHO05D006438 7.5e-42 174.5 195 57.4
PSO339G4156 Papaver somniferum HOM05D005654 ORTHO05D006438 2.2e-41 172.9 182 59.3
Dinv33575 Davidia involucrata HOM05D005654 ORTHO05D006438 4.1e-40 168.7 124 73.4
Hund00373 Selenicereus undatus HOM05D005654 ORTHO05D006438 4.1e-40 168.7 197 53.3
Ciclev10003765m.g Citrus clementina HOM05D005654 ORTHO05D006438 3.8e-38 162.2 126 66.7
SGA_v2.0_scaffold9G04932 Striga asiatica HOM05D005654 ORTHO05D006438 2.7e-36 156.0 122 68.9
FAN20G0529 Fragaria x ananassa HOM05D005654 ORTHO05D006438 8.0e-36 154.5 163 59.5
CDE04G0601 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 1.8e-35 153.3 191 54.5
CDE12G0226 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 2.3e-35 152.9 186 54.8
FAN24G1434 Fragaria x ananassa HOM05D005654 ORTHO05D006438 4.8e-33 145.2 163 54.6
AUR62027117 Chenopodium quinoa HOM05D005654 ORTHO05D006438 6.3e-33 144.8 192 50.5
AUR62012893 Chenopodium quinoa HOM05D005654 ORTHO05D006438 3.1e-32 142.5 193 50.3
Potri.007G018300 Populus trichocarpa HOM05D005654 ORTHO05D006438 9.1e-32 141.0 135 60.7
Cpa.g.sc217.22 Carica papaya HOM05D005654 ORTHO05D006438 1.2e-31 140.6 158 51.9
SGA_v2.0_scaffold280G46859 Striga asiatica HOM05D005654 ORTHO05D006438 3.5e-31 139.0 126 60.3
ATR0605G129 Amborella trichopoda HOM05D005654 ORTHO05D006438 7.7e-31 137.9 181 51.9
EL10Ac9g22080 Beta vulgaris HOM05D005654 ORTHO05D006438 1.3e-30 137.1 251 42.2
Sed0001903 Sechium edule HOM05D005654 ORTHO05D006438 5.0e-30 135.2 180 52.8
HPP92_013005 Vanilla planifolia HOM05D005654 ORTHO05D006438 3.2e-29 132.5 182 48.9
DCAR_025978 Daucus carota HOM05D005654 ORTHO05D006438 1.0e-27 127.5 185 52.4
Cfa006918 Carpinus fangiana HOM05D005654 ORTHO05D006438 1.8e-27 126.7 96 74.0
Psat0s439g0080 Pisum sativum HOM05D005654 ORTHO05D006438 1.8e-27 126.7 121 57.0
Nn5g29728 Nelumbo nucifera HOM05D005654 ORTHO05D006438 2.6e-26 122.9 166 47.6
Psat2g190960 Pisum sativum HOM05D005654 ORTHO05D006438 2.6e-26 122.9 123 55.3
Rhsim08G0123600 Rhododendron simsii HOM05D005654 ORTHO05D006438 2.2e-25 119.8 180 46.1
CARHR160580 Cardamine hirsuta HOM05D005654 ORTHO05D006438 2.8e-25 119.4 93 73.1
TWI09G1445 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 2.8e-25 119.4 89 73.0
Os05g0126200 Oryza sativa ssp. japonica HOM05D005654 ORTHO05D006438 5.4e-24 115.2 121 57.0
Ah.08g209860 Amaranthus hybridus HOM05D005654 ORTHO05D006438 7.0e-24 114.8 166 45.8
Zm00001eb265250 Zea mays HOM05D005654 ORTHO05D006438 2.0e-23 113.2 121 54.5
unitig_747.g21954 Utricularia gibba HOM05D005654 ORTHO05D006438 7.3e-21 104.8 108 52.8
SHI03481 Sapria himalayana HOM05D005654 ORTHO05D006438 1.3e-17 94.0 106 50.9
SEGI_21166 Sequoiadendron giganteum HOM05D005654 ORTHO05D006438 1.7e-17 93.6 134 44.0
Zm00001eb414250 Zea mays HOM05D005654 ORTHO05D006438 2.3e-14 83.2 96 53.1
CARHR160590 Cardamine hirsuta HOM05D005654 ORTHO05D006438 3.3e-13 79.3 93 48.4
FAN15G1271 Fragaria x ananassa HOM05D005654 ORTHO05D006438 3.3e-13 79.3 64 78.1
Lalb_Chr02g0154671 Lupinus albus HOM05D005654 ORTHO05D006438 3.3e-13 79.3 84 50.0
SHI05467 Sapria himalayana HOM05D005654 ORTHO05D006438 5.6e-13 78.6 97 50.5
MBI01_g11791_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 1.8e-11 73.6 143 41.3
Zm00001eb355020 Zea mays HOM05D005654 ORTHO05D006438 5.2e-11 72.0 123 41.5
SHI06070 Sapria himalayana HOM05D005654 ORTHO05D006438 4.4e-10 68.9 84 53.6
Mapoly0001s0539 Marchantia polymorpha HOM05D024399 ORTHO05D023494 4.1e-08 62.4 100 43.0
SHI15307 Sapria himalayana HOM05D005654 ORTHO05D006438 4.1e-08 62.4 119 40.3
Zm00001eb035810 Zea mays HOM05D005654 ORTHO05D006438 5.4e-08 62.0 75 50.7
Zm00001eb078300 Zea mays HOM05D000349 ORTHO05D010734 2.0e-07 60.1 73 50.7
Zm00001eb309330 Zea mays HOM05D000349 ORTHO05D006438 2.0e-07 60.1 73 50.7
FAN24G2610 Fragaria x ananassa HOM05D005654 ORTHO05D006438 7.8e-07 58.2 43 81.4
SHI10625 Sapria himalayana HOM05D020241 ORTHO05D006438 1.7e-06 57.0 68 51.5
SHI26700 Sapria himalayana HOM05D005654 ORTHO05D006438 1.7e-06 57.0 72 50.0


User provided reference genes

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