Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G3281 Cannabis sativa HOM05D005863 ORTHO05D003355 0.0e+00 2112.8 1171 100.0
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 3.5e-47 194.9 1367 24.9
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 4.2e-37 161.4 1282 26.4
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 4.7e-36 157.9 1402 25.0
Cfa009271 Carpinus fangiana HOM05D005863 ORTHO05D003355 1.4e-32 146.4 880 27.6
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 2.3e-30 139.0 1269 24.2
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 1.4e-27 129.8 1454 24.3
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 1.4e-27 129.8 1333 27.2
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 4.4e-26 124.8 1319 23.9
MD13G1106900 Malus domestica HOM05D005863 ORTHO05D017031 2.2e-25 122.5 1248 26.0
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 1.9e-24 119.4 171 40.9
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 3.2e-24 118.6 220 37.3
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 5.4e-24 117.9 362 28.7
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 3.5e-23 115.2 1218 23.6
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 7.8e-23 114.0 1344 24.0
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 1.0e-22 113.6 1273 24.2
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 1.1e-21 110.2 1203 24.2
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 1.9e-21 109.4 1266 24.0
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 5.6e-21 107.8 1344 23.0
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 4.7e-20 104.8 1237 25.1
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 1.1e-19 103.6 1261 24.0
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 1.4e-19 103.2 578 28.7
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 1.8e-19 102.8 496 27.2
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 3.1e-19 102.1 112 48.2
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 8.9e-19 100.5 1200 24.5
Migut.K00651 Erythranthe guttata HOM05D005863 ORTHO05D003355 2.0e-18 99.4 230 34.8
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 2.6e-18 99.0 84 58.3
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 2.6e-18 99.0 108 47.2
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 7.5e-18 97.4 1228 23.7
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 9.8e-18 97.1 100 47.0
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 1.7e-17 96.3 99 49.5
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 2.2e-17 95.9 111 44.1
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 2.9e-17 95.5 1234 24.3
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 3.7e-17 95.1 1243 25.0
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 4.9e-17 94.7 84 59.5
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 8.3e-17 94.0 92 53.3
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 1.1e-16 93.6 356 30.6
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 1.4e-16 93.2 1253 23.5
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 2.4e-16 92.4 1234 22.7
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 2.4e-16 92.4 495 24.6
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 7.1e-16 90.9 199 33.2
ATR0824G200 Amborella trichopoda HOM05D005863 ORTHO05D003355 1.6e-15 89.7 81 50.6
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 2.1e-15 89.4 1202 23.7
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 2.1e-15 89.4 375 29.1
Eucgr.B03235 Eucalyptus grandis HOM05D005863 ORTHO05D003355 3.5e-15 88.6 304 31.2
HanXRQChr08g0208041 Helianthus annuus HOM05D005863 ORTHO05D003355 6.0e-15 87.8 204 32.8
SGA_v2.0_scaffold124G33641 Striga asiatica HOM05D005863 ORTHO05D003355 7.8e-15 87.4 94 47.9
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 2.3e-14 85.9 382 29.6
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 2.3e-14 85.9 384 29.2
THA.LOC104825539 Tarenaya hassleriana HOM05D005863 ORTHO05D003355 2.3e-14 85.9 451 26.8
Nn1g07525 Nelumbo nucifera HOM05D005863 ORTHO05D003355 5.1e-14 84.7 82 52.4
PSO017G4976 Papaver somniferum HOM05D040514 ORTHO05D003355 8.6e-14 84.0 113 38.9
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 8.6e-14 84.0 192 30.7
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 1.1e-13 83.6 393 27.2
TAR629G0397 Trochodendron aralioides HOM05D005863 ORTHO05D003355 1.5e-13 83.2 81 49.4
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 1.9e-13 82.8 1201 23.6
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 2.5e-13 82.4 1281 22.2
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 4.3e-13 81.6 1279 22.4
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 5.6e-13 81.3 289 30.8
BcaB07g31396 Brassica carinata HOM05D008497 ORTHO05D003355 7.3e-13 80.9 99 46.5
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 7.3e-13 80.9 84 47.6
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 1.2e-12 80.1 94 43.6
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 1.8e-11 76.3 83 44.6
Sp2g01280 Schrenkiella parvula HOM05D008497 ORTHO05D027096 3.1e-11 75.5 297 29.0
Gohir.A13G132200 Gossypium hirsutum HOM05D005863 ORTHO05D003355 5.2e-11 74.7 89 41.6
THA.LOC104822728 Tarenaya hassleriana HOM05D012516 ORTHO05D003355 5.2e-11 74.7 95 38.9
HPP92_027528 Vanilla planifolia HOM05D005863 ORTHO05D003355 5.2e-11 74.7 89 41.6
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 6.8e-11 74.3 441 24.9
AL1G63990 Arabidopsis lyrata HOM05D012516 ORTHO05D003355 8.9e-11 73.9 186 28.5
BraA01t02635Z Brassica rapa HOM05D008497 ORTHO05D003355 8.9e-11 73.9 241 29.0
CAN.G650.29 Capsicum annuum HOM05D012928 ORTHO05D003355 8.9e-11 73.9 126 37.3
Lalb_Chr23g0277781 Lupinus albus HOM05D013281 ORTHO05D003355 8.9e-11 73.9 1232 24.2
Prupe.8G267500 Prunus persica HOM05D014719 ORTHO05D003355 8.9e-11 73.9 84 47.6
arahy.Tifrunner.gnm1.ann1.R3FSDD Arachis hypogaea HOM05D015529 ORTHO05D015409 1.2e-10 73.6 285 26.7
Gorai.013G152000 Gossypium raimondii HOM05D005863 ORTHO05D003355 1.2e-10 73.6 89 41.6
PSO339G3984 Papaver somniferum HOM05D005863 ORTHO05D003355 1.5e-10 73.2 120 36.7
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 1.5e-10 73.2 1196 21.4
Thecc.07G012300 Theobroma cacao HOM05D005863 ORTHO05D003355 1.5e-10 73.2 85 44.7
PSO339G2613 Papaver somniferum HOM05D005863 ORTHO05D003355 2.0e-10 72.8 84 44.0
HPP92_003025 Vanilla planifolia HOM05D048574 ORTHO05D003355 2.0e-10 72.8 186 28.0
Gohir.D13G135600 Gossypium hirsutum HOM05D005863 ORTHO05D003355 2.6e-10 72.4 89 41.6
Cc11_g16250 Coffea canephora HOM05D012928 ORTHO05D003355 3.4e-10 72.0 1324 22.8
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 4.4e-10 71.6 226 30.1
PSO384G2180 Papaver somniferum HOM05D005863 ORTHO05D003355 4.4e-10 71.6 94 39.4
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 4.4e-10 71.6 1235 21.8
HanXRQChr11g0334111 Helianthus annuus HOM05D005863 ORTHO05D003355 5.8e-10 71.2 88 42.0
Ah.02g130420 Amaranthus hybridus HOM05D025851 ORTHO05D003355 7.6e-10 70.9 84 44.0
AUR62024201 Chenopodium quinoa HOM05D025851 ORTHO05D044019 7.6e-10 70.9 82 40.2
PSO384G3490 Papaver somniferum HOM05D005863 ORTHO05D003355 9.9e-10 70.5 84 42.9
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 1.7e-09 69.7 80 45.0
AT1G55865 Arabidopsis thaliana HOM05D012516 ORTHO05D003355 2.2e-09 69.3 208 26.4
Cpa.g.sc12.119 Carica papaya HOM05D005863 ORTHO05D003355 2.2e-09 69.3 95 37.9
Ca_25120_v3 Cicer arietinum L. HOM05D013281 ORTHO05D015409 2.2e-09 69.3 298 29.9
TPR.G1700 Trifolium pratense HOM05D005863 ORTHO05D003355 2.2e-09 69.3 85 42.4
Ciclev10008896m.g Citrus clementina HOM05D005863 ORTHO05D003355 2.9e-09 68.9 181 27.6
Sp1g41465 Schrenkiella parvula HOM05D012516 ORTHO05D003355 2.9e-09 68.9 112 31.2
Sc16g0008130 Simmondsia chinensis HOM05D005863 ORTHO05D003355 2.9e-09 68.9 102 38.2
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 3.7e-09 68.6 396 25.5
GSVIVG01014696001 Vitis vinifera HOM05D005863 ORTHO05D003355 3.7e-09 68.6 82 42.7
Hma1.2p1_2829F.1_g329210 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 4.9e-09 68.2 101 37.6
Medtr2g036070 Medicago truncatula HOM05D005863 ORTHO05D003355 4.9e-09 68.2 85 41.2
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 6.4e-09 67.8 81 45.7
Carub.0001s4470 Capsella rubella HOM05D008497 ORTHO05D003355 6.4e-09 67.8 105 37.1
Lsat_1_v5_gn_7_114301 Lactuca sativa HOM05D005863 ORTHO05D003355 6.4e-09 67.8 81 42.0
Carub.0001s4444 Capsella rubella HOM05D012516 ORTHO05D003355 8.4e-09 67.4 102 34.3
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 8.4e-09 67.4 293 27.3
Ah.03g133620 Amaranthus hybridus HOM05D001489 ORTHO05D001380 1.1e-08 67.0 138 29.0
Medtr2g036080 Medicago truncatula HOM05D007390 ORTHO05D009114 1.1e-08 67.0 87 40.2
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 1.4e-08 66.6 1269 22.3
Thhalv10028078m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 1.4e-08 66.6 93 36.6
AT2G01800 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.4e-08 65.9 101 36.6
C06p16270 Brassica napus HOM05D012516 ORTHO05D003355 2.4e-08 65.9 121 33.9
CSS0034444 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 2.4e-08 65.9 81 40.7
vmacro09646 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 2.4e-08 65.9 80 41.2
C09p18810 Brassica napus HOM05D008497 ORTHO05D003355 3.2e-08 65.5 311 26.7
BraA05t20625Z Brassica rapa HOM05D012516 ORTHO05D003355 3.2e-08 65.5 93 36.6
Lalb_Chr11g0075591 Lupinus albus HOM05D013281 ORTHO05D015409 3.2e-08 65.5 248 31.0
BcaB02g10795 Brassica carinata HOM05D012516 ORTHO05D003355 4.1e-08 65.1 93 35.5
TWI38G1195 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 4.1e-08 65.1 81 42.0
BcaC04g22481 Brassica carinata HOM05D008497 ORTHO05D003355 5.4e-08 64.7 507 22.9
CARHR215860 Cardamine hirsuta HOM05D008497 ORTHO05D003355 5.4e-08 64.7 311 25.1
Thhalv10011171m.g Eutrema salsugineum HOM05D000747 ORTHO05D001683 5.4e-08 64.7 102 32.4
Lalb_Chr18g0052131 Lupinus albus HOM05D005863 ORTHO05D003355 5.4e-08 64.7 85 42.4
QL08p003943 Quercus lobata HOM05D014719 ORTHO05D003355 5.4e-08 64.7 136 32.4
THA.LOC104825538 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 5.4e-08 64.7 75 44.0
BcaC02g10405 Brassica carinata HOM05D008497 ORTHO05D003355 9.2e-08 63.9 85 40.0
A05p17260 Brassica napus HOM05D012516 ORTHO05D003355 9.2e-08 63.9 87 39.1
C04p29310 Brassica napus HOM05D008497 ORTHO05D003355 9.2e-08 63.9 85 40.0
BolC4t24461H Brassica oleracea HOM05D008497 ORTHO05D003355 9.2e-08 63.9 85 40.0
BcaC08g44222 Brassica carinata HOM05D012516 ORTHO05D003355 1.2e-07 63.5 110 35.5
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.6e-07 63.2 481 24.7
Psat1g149600 Pisum sativum HOM05D005863 ORTHO05D003355 1.6e-07 63.2 85 40.0
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 1.6e-07 63.2 1278 23.7
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 2.1e-07 62.8 1234 22.5
BolC6t36826H Brassica oleracea HOM05D012516 ORTHO05D003355 2.1e-07 62.8 193 29.0
Aa31sc46G40 Aethionema arabicum HOM05D005863 ORTHO05D003355 2.7e-07 62.4 158 24.7
BcaC06g36075 Brassica carinata HOM05D008497 ORTHO05D003355 2.7e-07 62.4 249 26.1
BolC9t54783H Brassica oleracea HOM05D008497 ORTHO05D003355 2.7e-07 62.4 508 22.6
CARHR045560 Cardamine hirsuta HOM05D000747 ORTHO05D001683 2.7e-07 62.4 171 24.6
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 3.5e-07 62.0 301 26.9
AT4G00920 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 4.6e-07 61.6 313 28.1
A09p15560 Brassica napus HOM05D008497 ORTHO05D003355 1.3e-06 60.1 362 24.9
C07p08170 Brassica napus HOM05D008497 ORTHO05D003355 1.3e-06 60.1 314 24.2
BolC7t41233H Brassica oleracea HOM05D008497 ORTHO05D003355 1.3e-06 60.1 314 24.2
BraA09t37196Z Brassica rapa HOM05D008497 ORTHO05D003355 1.3e-06 60.1 362 24.9
EL10As2g23204 Beta vulgaris HOM05D025851 ORTHO05D003355 1.7e-06 59.7 505 21.0
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 1.7e-06 59.7 1208 22.3
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 1.7e-06 59.7 1266 23.1
THA.LOC104808433 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 1.7e-06 59.7 72 40.3
THA.LOC104825537 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 1.7e-06 59.7 72 40.3
Cpa.g.sc369.5 Carica papaya HOM05D005863 ORTHO05D003355 3.0e-06 58.9 62 51.6
Eucgr.F03684 Eucalyptus grandis HOM05D005863 ORTHO05D003355 3.0e-06 58.9 81 37.0
Zm00001eb079300 Zea mays HOM05D028546 ORTHO05D030325 5.1e-06 58.2 81 34.6


User provided reference genes

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