Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G3275 Cannabis sativa HOM05D003615 ORTHO05D004858 1.8e-105 386.0 195 100.0
QL03p061743 Quercus lobata HOM05D003615 ORTHO05D004858 5.8e-32 141.7 194 43.8
QL03p061724 Quercus lobata HOM05D003615 ORTHO05D004858 9.9e-32 141.0 192 44.8
Duzib268G1044 Durio zibethinus HOM05D003615 ORTHO05D004858 2.2e-31 139.8 194 42.3
Haze_12144 Corylus avellana HOM05D003615 ORTHO05D004858 3.8e-31 139.0 194 42.3
CiPaw.05G146700 Carya illinoinensis HOM05D003615 ORTHO05D004858 4.9e-31 138.7 189 41.3
QL03p061749 Quercus lobata HOM05D003615 ORTHO05D004858 6.4e-31 138.3 194 39.2
Atru.chr11.2003 Acer truncatum HOM05D003615 ORTHO05D004858 8.4e-31 137.9 194 41.8
Prupe.1G255700 Prunus persica HOM05D003615 ORTHO05D004858 7.1e-30 134.8 190 42.6
MD13G1090000 Malus domestica HOM05D003615 ORTHO05D004858 2.1e-29 133.3 185 43.8
MD16G1090600 Malus domestica HOM05D003615 ORTHO05D004858 1.0e-28 131.0 185 42.7
COL.COLO4_36979 Corchorus olitorius HOM05D003615 ORTHO05D004858 2.3e-28 129.8 187 41.2
FAN22G0583 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.3e-26 124.0 188 39.9
FvH4_4g34710 Fragaria vesca HOM05D003615 ORTHO05D004858 2.1e-26 123.2 188 39.4
FAN12G0428 Fragaria x ananassa HOM05D003615 ORTHO05D004858 2.1e-26 123.2 188 39.4
FAN17G0861 Fragaria x ananassa HOM05D003615 ORTHO05D004858 2.1e-26 123.2 188 39.4
Cfa009107 Carpinus fangiana HOM05D003615 ORTHO05D004858 3.6e-26 122.5 185 41.6
RcHm_v2.0_Chr4g0444081 Rosa chinensis HOM05D003615 ORTHO05D004858 3.6e-26 122.5 187 40.1
FAN12G2508 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.8e-25 120.2 189 40.2
FAN22G1692 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.8e-25 120.2 189 39.7
FAN07G2164 Fragaria x ananassa HOM05D003615 ORTHO05D004858 2.4e-25 119.8 189 40.7
FvH4_4g34740 Fragaria vesca HOM05D003615 ORTHO05D004858 2.0e-24 116.7 189 38.6
FvH4_6g20500 Fragaria vesca HOM05D003615 ORTHO05D004858 4.5e-24 115.5 184 42.9
FAN14G2568 Fragaria x ananassa HOM05D003615 ORTHO05D004858 4.5e-24 115.5 184 42.9
FAN14G3971 Fragaria x ananassa HOM05D003615 ORTHO05D004858 4.5e-24 115.5 184 42.9
FAN02G2149 Fragaria x ananassa HOM05D003615 ORTHO05D004858 5.8e-24 115.2 187 40.6
FAN05G3998 Fragaria x ananassa HOM05D003615 ORTHO05D004858 7.6e-24 114.8 184 42.9
RcHm_v2.0_Chr3g0476381 Rosa chinensis HOM05D003615 ORTHO05D004858 7.6e-24 114.8 184 42.4
RcHm_v2.0_Chr4g0444101 Rosa chinensis HOM05D003615 ORTHO05D004858 7.6e-24 114.8 189 39.2
Prupe.1G255400 Prunus persica HOM05D003615 ORTHO05D004858 1.7e-23 113.6 189 37.6
FvH4_6g20520 Fragaria vesca HOM05D003615 ORTHO05D004858 2.2e-23 113.2 184 42.4
Actinidia15034 Actinidia chinensis HOM05D003615 ORTHO05D004858 3.8e-23 112.5 180 36.7
Glyma.08G134200 Glycine max HOM05D003615 ORTHO05D004858 6.4e-23 111.7 194 37.1
FAN16G0215 Fragaria x ananassa HOM05D003615 ORTHO05D004858 8.4e-23 111.3 180 39.4
FvH4_3g33230 Fragaria vesca HOM05D003615 ORTHO05D004858 2.4e-22 109.8 180 39.4
Prupe.1G255600 Prunus persica HOM05D003615 ORTHO05D004858 7.1e-22 108.2 201 36.8
FAN17G1254 Fragaria x ananassa HOM05D003615 ORTHO05D022686 1.6e-21 107.1 195 35.9
Phvul.002G257500 Phaseolus vulgaris HOM05D003615 ORTHO05D004858 3.5e-21 105.9 194 35.6
Duzib268G1684 Durio zibethinus HOM05D003615 ORTHO05D004858 4.6e-21 105.5 202 36.6
Medtr8g063930 Medicago truncatula HOM05D003615 ORTHO05D004858 4.6e-21 105.5 194 38.1
VMungo0251G2176 Vigna mungo HOM05D003615 ORTHO05D004858 4.6e-21 105.5 194 35.6
Aqoxy3G03028 Aquilegia oxysepala HOM05D003615 ORTHO05D004858 6.0e-21 105.1 194 33.0
TAR374G0689 Trochodendron aralioides HOM05D003615 ORTHO05D004858 6.0e-21 105.1 188 35.1
VMungo0251G0576 Vigna mungo HOM05D003615 ORTHO05D004858 1.8e-20 103.6 194 37.1
Psat7g055960 Pisum sativum HOM05D003615 ORTHO05D004858 3.0e-20 102.8 188 37.8
CiPaw.06G074200 Carya illinoinensis HOM05D003615 ORTHO05D004858 6.7e-20 101.7 123 41.5
Rhsim12G0121500 Rhododendron simsii HOM05D002725 ORTHO05D003279 1.5e-19 100.5 169 37.3
Duzib251G0695 Durio zibethinus HOM05D003615 ORTHO05D004858 4.3e-19 99.0 172 34.9
Eucgr.I01825 Eucalyptus grandis HOM05D003615 ORTHO05D004858 9.6e-19 97.8 191 38.2
Phvul.003G052700 Phaseolus vulgaris HOM05D003615 ORTHO05D004858 9.6e-19 97.8 194 35.6
Eucgr.I01826 Eucalyptus grandis HOM05D003615 ORTHO05D004858 1.3e-18 97.4 113 47.8
Glyma.08G288200 Glycine max HOM05D003615 ORTHO05D004858 1.6e-18 97.1 185 36.2
TPR.G6213 Trifolium pratense HOM05D003615 ORTHO05D004858 1.6e-18 97.1 193 33.2
Eucgr.B03351 Eucalyptus grandis HOM05D003615 ORTHO05D004858 2.8e-18 96.3 138 39.1
Psat4g124720 Pisum sativum HOM05D003615 ORTHO05D004858 3.7e-18 95.9 194 34.0
TAR629G1076 Trochodendron aralioides HOM05D003615 ORTHO05D004858 3.7e-18 95.9 198 35.9
Lj4g0014300 Lotus japonicus HOM05D003615 ORTHO05D004858 4.8e-18 95.5 195 34.9
Lalb_Chr07g0185251 Lupinus albus HOM05D003615 ORTHO05D004858 4.8e-18 95.5 122 43.4
Medtr1g060280 Medicago truncatula HOM05D003615 ORTHO05D004858 4.8e-18 95.5 186 33.3
TAR629G2286 Trochodendron aralioides HOM05D003615 ORTHO05D004858 4.8e-18 95.5 198 34.8
Glyma.18G137000 Glycine max HOM05D003615 ORTHO05D004858 6.2e-18 95.1 185 34.6
Thecc.02G244900 Theobroma cacao HOM05D003615 ORTHO05D004858 8.1e-18 94.7 195 34.4
Dinv35046 Davidia involucrata HOM05D003615 ORTHO05D004858 2.4e-17 93.2 186 34.9
Eucgr.B03352 Eucalyptus grandis HOM05D003615 ORTHO05D004858 2.4e-17 93.2 125 40.8
TPR.G29246 Trifolium pratense HOM05D003615 ORTHO05D004858 3.1e-17 92.8 194 34.0
Gohir.D04G178200 Gossypium hirsutum HOM05D003615 ORTHO05D004858 4.0e-17 92.4 176 34.7
Lj4g0013299 Lotus japonicus HOM05D003615 ORTHO05D004858 5.3e-17 92.0 188 34.6
arahy.Tifrunner.gnm1.ann1.1EVC3W Arachis hypogaea HOM05D003615 ORTHO05D004858 2.6e-16 89.7 188 32.4
Gohir.A04G135100 Gossypium hirsutum HOM05D003615 ORTHO05D004858 2.6e-16 89.7 176 34.7
Lj4g0011563 Lotus japonicus HOM05D003615 ORTHO05D004858 2.6e-16 89.7 194 32.5
arahy.Tifrunner.gnm1.ann1.2199FB Arachis hypogaea HOM05D003615 ORTHO05D004858 3.4e-16 89.4 188 32.4
Rhsim10G0023500 Rhododendron simsii HOM05D003615 ORTHO05D004858 4.5e-16 89.0 117 45.3
CANSAT01G1820 Cannabis sativa HOM05D003615 ORTHO05D004858 5.8e-16 88.6 188 33.5
Gorai.012G171300 Gossypium raimondii HOM05D003615 ORTHO05D004858 5.8e-16 88.6 176 34.1
Rhsim10G0023900 Rhododendron simsii HOM05D003615 ORTHO05D004858 2.2e-15 86.7 117 44.4
COL.COLO4_36978 Corchorus olitorius HOM05D003615 ORTHO05D004858 6.4e-15 85.1 118 41.5
PGR119G0743 Punica granatum HOM05D003615 ORTHO05D004858 1.1e-14 84.3 180 37.8
AUR62005358 Chenopodium quinoa HOM05D003615 ORTHO05D004858 4.2e-14 82.4 195 34.4
Ah.03g132560 Amaranthus hybridus HOM05D003615 ORTHO05D004858 9.3e-14 81.3 191 30.9
C05p23050 Brassica napus HOM05D003615 ORTHO05D004858 9.3e-14 81.3 199 29.1
CiPaw.06G074300 Carya illinoinensis HOM05D003615 ORTHO05D004858 1.2e-13 80.9 100 40.0
CARHR024240 Cardamine hirsuta HOM05D003615 ORTHO05D004858 2.1e-13 80.1 220 29.1
BraA09t39593Z Brassica rapa HOM05D003615 ORTHO05D004858 3.5e-13 79.3 206 30.6
Carub.0001s2334 Capsella rubella HOM05D003615 ORTHO05D004858 3.5e-13 79.3 203 27.6
CARHR024250 Cardamine hirsuta HOM05D003615 ORTHO05D004858 3.5e-13 79.3 204 32.4
A09p40990 Brassica napus HOM05D003615 ORTHO05D004858 4.6e-13 79.0 200 31.0
AT1G23850 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 7.9e-13 78.2 209 29.7
BcaB07g32357 Brassica carinata HOM05D003615 ORTHO05D004858 7.9e-13 78.2 197 33.5
CsaV3_3G042230 Cucumis sativus L. HOM05D003615 ORTHO05D004858 7.9e-13 78.2 182 33.0
FAN09G2044 Fragaria x ananassa HOM05D003615 ORTHO05D004858 7.9e-13 78.2 184 33.2
Hma1.2p1_0697F.1_g204790 Hydrangea macrophylla HOM05D003615 ORTHO05D004858 7.9e-13 78.2 184 31.5
Atru.chr6.2153 Acer truncatum HOM05D003615 ORTHO05D004858 1.0e-12 77.8 190 31.6
Ah.03g132550 Amaranthus hybridus HOM05D003615 ORTHO05D004858 1.0e-12 77.8 192 29.7
Dinv24874 Davidia involucrata HOM05D003615 ORTHO05D004858 1.0e-12 77.8 97 45.4
CsaV3_3G042210 Cucumis sativus L. HOM05D003615 ORTHO05D004858 2.3e-12 76.6 187 32.6
Gorai.012G060600 Gossypium raimondii HOM05D003615 ORTHO05D004858 2.3e-12 76.6 127 40.9
MD16G1090500 Malus domestica HOM05D003615 ORTHO05D004858 2.3e-12 76.6 84 50.0
Nn4g22826 Nelumbo nucifera HOM05D003615 ORTHO05D004858 2.3e-12 76.6 197 33.5
MELO3C009943.2 Cucumis melo HOM05D003615 ORTHO05D004858 3.0e-12 76.3 182 32.4
AL1G37600 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 3.9e-12 75.9 210 27.6
Thecc.04G007200 Theobroma cacao HOM05D003615 ORTHO05D004858 3.9e-12 75.9 120 40.0
Duzib147G1418 Durio zibethinus HOM05D003615 ORTHO05D004858 5.1e-12 75.5 124 41.9
C05p23000 Brassica napus HOM05D003615 ORTHO05D004858 6.7e-12 75.1 207 31.4
ClCG10G014370 Citrullus lanatus HOM05D003615 ORTHO05D004858 6.7e-12 75.1 182 32.4
EL10Ac6g13654 Beta vulgaris HOM05D003615 ORTHO05D004858 8.7e-12 74.7 123 39.8
MELO3C009942.2 Cucumis melo HOM05D003615 ORTHO05D004858 1.1e-11 74.3 192 29.2
AT1G23840 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 1.5e-11 73.9 198 31.8
AUR62014008 Chenopodium quinoa HOM05D002682 ORTHO05D002878 1.5e-11 73.9 199 31.7
BcaC05g26288 Brassica carinata HOM05D003615 ORTHO05D004858 1.9e-11 73.6 210 32.4
Ciclev10001867m.g Citrus clementina HOM05D003615 ORTHO05D004858 3.3e-11 72.8 154 34.4
Gohir.D04G054000 Gossypium hirsutum HOM05D003615 ORTHO05D004858 4.3e-11 72.4 119 42.0
Potri.006G262900 Populus trichocarpa HOM05D003615 ORTHO05D004858 5.6e-11 72.0 192 30.7
Gohir.A05G360200 Gossypium hirsutum HOM05D003615 ORTHO05D004858 1.3e-10 70.9 127 40.2
AUR62005356 Chenopodium quinoa HOM05D003615 ORTHO05D004858 1.6e-10 70.5 122 36.1
AL1G37580 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 3.7e-10 69.3 114 34.2
THA.LOC104822136 Tarenaya hassleriana HOM05D003615 ORTHO05D004858 3.7e-10 69.3 208 31.2
Sp1g21200 Schrenkiella parvula HOM05D003615 ORTHO05D004858 4.8e-10 68.9 209 30.1
BcaB03g14133 Brassica carinata HOM05D003615 ORTHO05D004858 6.2e-10 68.6 205 31.7
Sabra06G0205200 Salix brachista HOM05D000330 ORTHO05D004858 6.2e-10 68.6 192 29.2
Sed0019217 Sechium edule HOM05D003615 ORTHO05D004858 6.2e-10 68.6 186 34.4
BcaC06g35055 Brassica carinata HOM05D003615 ORTHO05D004858 8.2e-10 68.2 211 30.8
A07p13760 Brassica napus HOM05D003615 ORTHO05D004858 8.2e-10 68.2 209 30.6
C07p20230 Brassica napus HOM05D003615 ORTHO05D004858 8.2e-10 68.2 211 30.8
BolC7t42544H Brassica oleracea HOM05D003615 ORTHO05D004858 8.2e-10 68.2 211 30.8
Carub.0001s2333 Capsella rubella HOM05D003615 ORTHO05D004858 1.1e-09 67.8 125 33.6
GSVIVG01004279001 Vitis vinifera HOM05D003615 ORTHO05D004858 1.1e-09 67.8 178 29.2
BraA07t29125Z Brassica rapa HOM05D003615 ORTHO05D004858 3.1e-09 66.2 211 32.2
AT1G23830 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 1.5e-08 63.9 125 32.8
Hund05979 Selenicereus undatus HOM05D003615 ORTHO05D004858 1.5e-08 63.9 193 31.6
COL.COLO4_04783 Corchorus olitorius HOM05D003615 ORTHO05D004858 2.6e-08 63.2 127 33.1
AUR62014010 Chenopodium quinoa HOM05D003615 ORTHO05D004858 7.6e-08 61.6 190 30.0
FAN11G0954 Fragaria x ananassa HOM05D003615 ORTHO05D004858 7.6e-08 61.6 61 47.5
CARHR024230 Cardamine hirsuta HOM05D003615 ORTHO05D004858 1.0e-07 61.2 211 27.5
ClCG10G014380 Citrullus lanatus HOM05D003615 ORTHO05D004858 1.0e-07 61.2 187 28.3
Eucgr.B03350 Eucalyptus grandis HOM05D003615 ORTHO05D004858 1.0e-07 61.2 181 32.0
Atru.chr6.2186 Acer truncatum HOM05D003615 ORTHO05D004858 1.3e-07 60.8 196 30.1
AUR62014009 Chenopodium quinoa HOM05D003615 ORTHO05D004858 1.7e-07 60.5 115 33.9
Thhalv10008195m.g Eutrema salsugineum HOM05D003615 ORTHO05D004858 3.8e-07 59.3 201 28.4
AL1G37590 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 8.4e-07 58.2 111 35.1
Thhalv10009999m.g Eutrema salsugineum HOM05D003615 ORTHO05D004858 1.1e-06 57.8 207 28.5
TAR622G0247 Trochodendron aralioides HOM05D003615 ORTHO05D004858 1.4e-06 57.4 204 27.9
BolC5t30999H Brassica oleracea HOM05D003615 ORTHO05D004858 1.9e-06 57.0 218 26.1
TAR622G1321 Trochodendron aralioides HOM05D003615 ORTHO05D004858 4.2e-06 55.8 204 27.5
BcaC06g35057 Brassica carinata HOM05D003615 ORTHO05D004858 5.5e-06 55.5 197 28.4
C07p20220 Brassica napus HOM05D003615 ORTHO05D004858 5.5e-06 55.5 199 28.6
PGR142G2932 Punica granatum HOM05D003615 ORTHO05D004858 5.5e-06 55.5 75 42.7
Duzib251G0647 Durio zibethinus HOM05D003615 ORTHO05D004858 9.3e-06 54.7 104 32.7


User provided reference genes

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