Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G3264 Cannabis sativa HOM05D006387 ORTHO05D008533 9.2e-136 486.9 245 100.0
QL06p047416 Quercus lobata HOM05D006387 ORTHO05D008533 1.3e-89 333.6 189 88.9
QL93p1865_0022 Quercus lobata HOM05D006387 ORTHO05D008533 1.3e-89 333.6 189 88.9
Cfa004350 Carpinus fangiana HOM05D006387 ORTHO05D008533 1.6e-87 326.6 191 85.9
Dinv13619 Davidia involucrata HOM05D006387 ORTHO05D008533 1.8e-86 323.2 189 85.2
CiPaw.01G046800 Carya illinoinensis HOM05D006387 ORTHO05D008533 3.0e-86 322.4 196 83.2
Gorai.007G233200 Gossypium raimondii HOM05D006387 ORTHO05D008533 2.0e-85 319.7 188 84.6
Haze_15057 Corylus avellana HOM05D000344 ORTHO05D000934 3.3e-85 318.9 198 81.8
Manes.12G127300 Manihot esculenta HOM05D006387 ORTHO05D008533 1.7e-84 316.6 217 77.9
RcHm_v2.0_Chr2g0111431 Rosa chinensis HOM05D006387 ORTHO05D008533 1.7e-84 316.6 191 84.3
Lj4g0015074 Lotus japonicus HOM05D006387 ORTHO05D008533 1.4e-83 313.5 185 84.3
SalBow5G0849 Salvia bowleyana HOM05D006387 ORTHO05D008533 5.3e-83 311.6 205 76.1
Glyma.18G146100 Glycine max HOM05D006387 ORTHO05D008533 1.2e-82 310.5 185 83.2
arahy.Tifrunner.gnm1.ann1.ZYRR1K Arachis hypogaea HOM05D006387 ORTHO05D008533 3.4e-82 308.9 224 71.0
Prupe.6G197200 Prunus persica HOM05D006387 ORTHO05D008533 3.4e-82 308.9 183 85.8
Ca_22597_v3 Cicer arietinum L. HOM05D006387 ORTHO05D008533 4.5e-82 308.5 184 82.1
MELO3C007722.2 Cucumis melo HOM05D006387 ORTHO05D008533 4.5e-82 308.5 223 72.2
Thecc.01G091900 Theobroma cacao HOM05D006387 ORTHO05D008533 5.9e-82 308.1 192 79.7
arahy.Tifrunner.gnm1.ann1.K640S8 Arachis hypogaea HOM05D006387 ORTHO05D008533 7.7e-82 307.8 228 70.2
Ciclev10026362m.g Citrus clementina HOM05D006387 ORTHO05D008533 1.0e-81 307.4 226 71.2
CsaV3_6G045090 Cucumis sativus L. HOM05D006387 ORTHO05D008533 1.0e-81 307.4 182 84.1
FAN28G2490 Fragaria x ananassa HOM05D006387 ORTHO05D008533 1.0e-81 307.4 193 82.9
TWI53G0307 Tripterygium wilfordii HOM05D006387 ORTHO05D008533 1.0e-81 307.4 227 71.4
Sc16g0000480 Simmondsia chinensis HOM05D006387 ORTHO05D008533 2.2e-81 306.2 197 78.7
Gohir.D11G217100 Gossypium hirsutum HOM05D006387 ORTHO05D008533 2.9e-81 305.8 186 82.3
Lalb_Chr05g0228491 Lupinus albus HOM05D006387 ORTHO05D008533 3.8e-81 305.4 184 81.5
Atru.chr3.1288 Acer truncatum HOM05D006387 ORTHO05D008533 1.1e-80 303.9 175 84.6
TPR.G14610 Trifolium pratense HOM05D006387 ORTHO05D008533 1.1e-80 303.9 171 84.8
Medtr8g068855 Medicago truncatula HOM05D006387 ORTHO05D008533 1.4e-80 303.5 182 81.9
Nitab4.5_0001468g0050 Nicotiana tabacum HOM05D006387 ORTHO05D008533 1.4e-80 303.5 168 86.3
Solyc11g010510.2 Solanum lycopersicum HOM05D006387 ORTHO05D008533 1.4e-80 303.5 229 67.7
unitig_748.g8645 Utricularia gibba HOM05D006387 ORTHO05D008533 1.4e-80 303.5 188 78.7
Peaxi162Scf00447g00119 Petunia axillaris HOM05D006387 ORTHO05D008533 1.9e-80 303.1 188 79.3
Gohir.A11G206500 Gossypium hirsutum HOM05D006387 ORTHO05D008533 4.2e-80 302.0 190 80.0
PGSC0003DMG400016205 Solanum tuberosum HOM05D006387 ORTHO05D008533 5.5e-80 301.6 178 81.5
Nitab4.5_0010196g0030 Nicotiana tabacum HOM05D006387 ORTHO05D008533 7.2e-80 301.2 172 84.3
Sopen11g005290 Solanum pennellii HOM05D006387 ORTHO05D008533 7.2e-80 301.2 171 84.2
MSTRG.15694 Avicennia marina HOM05D006387 ORTHO05D008533 9.4e-80 300.8 181 81.8
Migut.K00786 Erythranthe guttata HOM05D006387 ORTHO05D008533 9.4e-80 300.8 163 87.7
FAN26G1841 Fragaria x ananassa HOM05D006387 ORTHO05D008533 9.4e-80 300.8 193 81.3
FvH4_1g19820 Fragaria vesca HOM05D006387 ORTHO05D008533 2.7e-79 299.3 193 79.8
Hund16539 Selenicereus undatus HOM05D006387 ORTHO05D008533 2.7e-79 299.3 192 77.6
CAN.G1388.12 Capsicum annuum HOM05D006387 ORTHO05D008533 7.9e-79 297.7 187 77.0
Eucgr.H04725 Eucalyptus grandis HOM05D006387 ORTHO05D008533 7.9e-79 297.7 167 84.4
Psat4g119200 Pisum sativum HOM05D006387 ORTHO05D008533 7.9e-79 297.7 224 68.3
Aa31LG6G15050 Aethionema arabicum HOM05D006387 ORTHO05D008533 1.0e-78 297.4 191 80.1
Sed0018819 Sechium edule HOM05D006387 ORTHO05D008533 1.0e-78 297.4 167 85.6
MD15G1314800 Malus domestica HOM05D006387 ORTHO05D008533 1.4e-78 297.0 167 87.4
THA.LOC104804173 Tarenaya hassleriana HOM05D006387 ORTHO05D008533 1.4e-78 297.0 171 84.2
AUR62003651 Chenopodium quinoa HOM05D006387 ORTHO05D008533 1.8e-78 296.6 235 68.9
FAN19G3199 Fragaria x ananassa HOM05D006387 ORTHO05D008533 3.0e-78 295.8 193 78.8
PGR102G1540 Punica granatum HOM05D006387 ORTHO05D008533 3.0e-78 295.8 227 69.2
Cpa.g.sc55.48 Carica papaya HOM05D006387 ORTHO05D008533 3.9e-78 295.4 181 80.7
SGA_v2.0_scaffold52G19002 Striga asiatica HOM05D006387 ORTHO05D008533 3.9e-78 295.4 177 82.5
Lju188A1T76 Lonicera japonica HOM05D006387 ORTHO05D008533 6.7e-78 294.7 168 83.9
Lj4A270T42 Lonicera japonica HOM05D006387 ORTHO05D008533 8.8e-78 294.3 168 83.9
AUR62017959 Chenopodium quinoa HOM05D006387 ORTHO05D008533 1.5e-77 293.5 233 68.2
PSO541G2357 Papaver somniferum HOM05D006387 ORTHO05D008533 1.5e-77 293.5 183 77.0
EL10Ac6g15218 Beta vulgaris HOM05D006387 ORTHO05D008533 2.0e-77 293.1 186 79.0
MBI06_g39563_MAGBIO Magnolia biondii HOM05D006387 ORTHO05D008533 5.7e-77 291.6 191 75.9
vmacro18567 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 7.4e-77 291.2 164 86.0
Cc07_g14250 Coffea canephora HOM05D006387 ORTHO05D008533 1.3e-76 290.4 189 75.7
Potri.007G010400 Populus trichocarpa HOM05D006387 ORTHO05D008533 1.7e-76 290.0 219 69.4
Rhsim08G0015000 Rhododendron simsii HOM05D006387 ORTHO05D008533 1.7e-76 290.0 163 85.9
Carub.0007s0212 Capsella rubella HOM05D006387 ORTHO05D008533 4.8e-76 288.5 189 78.8
ECA238G0943 Erigeron canadensis HOM05D006387 ORTHO05D008533 2.4e-75 286.2 172 80.2
Phvul.003G289400 Phaseolus vulgaris HOM05D006387 ORTHO05D008533 9.1e-75 284.3 227 64.3
Thhalv10026114m.g Eutrema salsugineum HOM05D006387 ORTHO05D008533 1.2e-74 283.9 201 73.6
Sabra07G0007900 Salix brachista HOM05D006387 ORTHO05D008533 2.6e-74 282.7 219 68.0
A04p09020 Brassica napus HOM05D006387 ORTHO05D008533 1.0e-73 280.8 173 80.9
BraA04t16597Z Brassica rapa HOM05D006387 ORTHO05D008533 1.0e-73 280.8 173 80.9
GSVIVG01003594001 Vitis vinifera HOM05D006387 ORTHO05D008533 1.0e-73 280.8 179 75.4
GSVIVG01006732001 Vitis vinifera HOM05D006387 ORTHO05D008533 1.0e-73 280.8 179 75.4
BcaNung03133 Brassica carinata HOM05D006387 ORTHO05D008533 2.9e-73 279.3 173 80.3
BcaC02g09451 Brassica carinata HOM05D006387 ORTHO05D008533 5.0e-73 278.5 173 80.3
HanXRQChr14g0442661 Helianthus annuus HOM05D006387 ORTHO05D008533 5.0e-73 278.5 181 74.6
C04p42900 Brassica napus HOM05D006387 ORTHO05D008533 1.5e-72 276.9 173 79.8
Duzib187G0618 Durio zibethinus HOM05D006387 ORTHO05D008533 1.5e-72 276.9 178 74.7
BolC4t25859H Brassica oleracea HOM05D006387 ORTHO05D008533 1.9e-72 276.6 173 79.8
Sp7g10120 Schrenkiella parvula HOM05D006387 ORTHO05D008533 3.2e-72 275.8 202 71.8
Nn5g29908 Nelumbo nucifera HOM05D006387 ORTHO05D008533 5.5e-72 275.0 199 71.9
AL7G12534 Arabidopsis lyrata HOM05D006387 ORTHO05D008533 1.2e-71 273.9 190 75.3
ClCG01G018420 Citrullus lanatus HOM05D006387 ORTHO05D008533 2.7e-71 272.7 211 67.8
Aqoxy6G01447 Aquilegia oxysepala HOM05D006387 ORTHO05D008533 1.8e-70 270.0 167 77.2
CDE08G1301 Ceratophyllum demersum HOM05D006387 ORTHO05D008533 4.4e-69 265.4 162 79.6
Lsat_1_v5_gn_2_70881 Lactuca sativa HOM05D006387 ORTHO05D008533 9.7e-69 264.2 167 77.2
Os08g0478100 Oryza sativa ssp. japonica HOM05D006387 ORTHO05D008533 1.7e-68 263.5 166 74.7
Zm00001eb038350 Zea mays HOM05D006387 ORTHO05D008533 4.8e-68 261.9 166 73.5
Actinidia26608 Actinidia chinensis HOM05D006387 ORTHO05D008533 6.3e-68 261.5 169 76.3
ATR0022G066 Amborella trichopoda HOM05D006387 ORTHO05D008533 1.2e-66 257.3 207 63.8
vmacro09229 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 2.2e-65 253.1 147 82.3
Glyma.08G280000 Glycine max HOM05D006387 ORTHO05D008533 1.2e-63 247.3 177 74.6
SEGI_33925 Sequoiadendron giganteum HOM05D006387 ORTHO05D008533 9.8e-61 237.7 161 67.7
CSS0019105 Camellia sinensis var. sinensis HOM05D006387 ORTHO05D008533 1.3e-60 237.3 133 88.0
AT4G38090 Arabidopsis thaliana HOM05D006387 ORTHO05D008533 1.1e-56 224.2 150 76.7
Pp3c7_18820 Physcomitrium patens HOM05D006387 ORTHO05D008533 5.6e-48 195.3 170 54.7
AagrBONN_evm.TU.Sc2ySwM_344.3556 Anthoceros agrestis HOM05D006387 ORTHO05D008533 1.6e-47 193.7 177 54.8
Gorai.007G059200 Gossypium raimondii HOM05D006387 ORTHO05D008533 5.2e-46 188.7 213 53.1
Gohir.D11G054100 Gossypium hirsutum HOM05D006387 ORTHO05D008533 1.5e-45 187.2 213 53.5
VMungo0251G0198 Vigna mungo HOM05D006387 ORTHO05D008533 5.7e-45 185.3 115 81.7
SMO361G0736 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 4.9e-44 182.2 131 66.4
FAN23G2995 Fragaria x ananassa HOM05D006387 ORTHO05D008533 9.5e-40 167.9 118 78.0
Cre10.g448800 Chlamydomonas reinhardtii HOM05D006387 ORTHO05D008533 3.6e-39 166.0 176 46.0
vmacro14991 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 7.5e-37 158.3 126 64.3
Gohir.A11G050750 Gossypium hirsutum HOM05D006387 ORTHO05D008533 2.0e-34 150.2 220 45.9
RcHm_v2.0_Chr2g0111411 Rosa chinensis HOM05D006387 ORTHO05D008533 3.5e-34 149.4 137 62.0
CARHR246490 Cardamine hirsuta HOM05D006387 ORTHO05D008533 6.6e-33 145.2 110 70.9
SMO361G0739 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 1.2e-31 141.0 98 67.3
MCO03G602 Micromonas commoda HOM05D006387 ORTHO05D008533 1.5e-29 134.0 154 45.5
SMO361G0500 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 2.2e-28 130.2 120 50.8
PRCOL_00004912 Prasinoderma coloniale HOM05D006387 ORTHO05D008533 4.6e-26 122.5 133 44.4
TPR.G1343 Trifolium pratense HOM05D000744 ORTHO05D000332 8.6e-25 118.2 62 85.5
HPP92_016734 Vanilla planifolia HOM05D006387 ORTHO05D008533 1.1e-22 111.3 89 62.9
vmacro10806 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 2.6e-21 106.7 79 68.4
COL.COLO4_27345 Corchorus olitorius HOM05D000344 ORTHO05D000934 4.4e-21 105.9 114 55.3
HanXRQChr16g0520881 Helianthus annuus HOM05D006387 ORTHO05D008533 6.2e-15 85.5 51 78.4
SMO004G0012 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 1.7e-12 77.4 64 57.8
Ah.03g140070 Amaranthus hybridus HOM05D006387 ORTHO05D008533 1.7e-09 67.4 53 69.8
Actinidia06523 Actinidia chinensis HOM05D009440 ORTHO05D011919 5.1e-09 65.9 43 74.4
Ah.03g140080 Amaranthus hybridus HOM05D006387 ORTHO05D008533 8.7e-09 65.1 40 72.5
HPP92_016750 Vanilla planifolia HOM05D006387 ORTHO05D008533 3.3e-08 63.2 68 51.5


User provided reference genes

Program Settings