Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 4.9e-89 331.3 186 100.0
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 1.8e-62 243.0 189 74.1
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 1.8e-62 243.0 189 74.1
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 2.3e-62 242.7 179 73.7
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 6.7e-62 241.1 179 72.6
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 6.7e-62 241.1 179 72.1
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.5e-61 240.0 183 69.9
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 1.5e-61 240.0 187 69.5
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 3.3e-61 238.8 186 71.0
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 3.3e-61 238.8 183 71.0
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 5.7e-61 238.0 179 72.6
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 9.7e-61 237.3 175 74.9
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 1.7e-60 236.5 194 67.5
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 4.8e-60 235.0 186 69.4
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.1e-59 233.8 180 71.1
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 1.4e-59 233.4 185 71.9
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 1.8e-59 233.0 183 68.3
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 1.8e-59 233.0 180 69.4
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.8e-59 233.0 180 70.6
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 2.4e-59 232.6 179 67.0
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 2.4e-59 232.6 184 69.0
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 2.4e-59 232.6 184 69.0
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 4.1e-59 231.9 179 70.4
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 4.1e-59 231.9 182 68.1
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 4.1e-59 231.9 186 68.8
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 6.9e-59 231.1 183 67.8
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 2.0e-58 229.6 179 67.6
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 2.6e-58 229.2 187 66.8
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 4.5e-58 228.4 181 68.5
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 4.5e-58 228.4 183 71.0
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 1.0e-57 227.3 184 68.5
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 1.0e-57 227.3 188 69.1
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.0e-57 227.3 179 68.2
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 1.3e-57 226.9 132 86.4
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 1.3e-57 226.9 187 65.8
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 1.7e-57 226.5 183 66.1
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 1.7e-57 226.5 178 68.5
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 2.2e-57 226.1 185 67.0
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 2.9e-57 225.7 189 65.1
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 2.9e-57 225.7 189 65.1
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.9e-57 225.7 187 67.9
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 3.8e-57 225.3 185 69.2
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 6.5e-57 224.6 187 67.9
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 6.5e-57 224.6 187 67.9
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 8.5e-57 224.2 180 67.2
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 1.1e-56 223.8 181 67.4
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 1.1e-56 223.8 179 67.6
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 1.1e-56 223.8 203 63.5
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 1.1e-56 223.8 186 65.6
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 1.4e-56 223.4 191 68.1
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 2.5e-56 222.6 179 67.6
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 3.2e-56 222.2 188 63.8
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 3.2e-56 222.2 182 67.0
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 4.2e-56 221.9 181 66.3
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 4.2e-56 221.9 182 68.7
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 7.2e-56 221.1 191 66.0
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 9.4e-56 220.7 188 70.7
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 1.6e-55 219.9 191 64.4
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 2.1e-55 219.5 181 65.7
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 2.1e-55 219.5 178 68.5
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 2.7e-55 219.2 182 67.6
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.7e-55 219.2 181 65.7
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 2.7e-55 219.2 180 66.1
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 7.9e-55 217.6 192 64.6
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 7.9e-55 217.6 179 66.5
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 1.0e-54 217.2 179 65.9
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 1.4e-54 216.9 193 64.2
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 1.8e-54 216.5 180 64.4
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 3.0e-54 215.7 181 63.5
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 3.0e-54 215.7 181 63.5
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 3.9e-54 215.3 190 67.4
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 3.9e-54 215.3 141 76.6
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 5.1e-54 214.9 188 64.4
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 6.7e-54 214.5 183 64.5
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 6.7e-54 214.5 181 63.0
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 2.0e-53 213.0 180 61.7
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 2.6e-53 212.6 181 62.4
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 3.3e-53 212.2 202 59.9
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 7.4e-53 211.1 187 70.6
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 9.7e-53 210.7 137 78.8
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 8.2e-52 207.6 136 79.4
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 3.1e-51 205.7 183 62.8
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 2.0e-50 203.0 206 55.8
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 2.6e-50 202.6 195 58.5
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 3.5e-50 202.2 180 62.8
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 5.9e-50 201.4 183 63.4
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 1.0e-49 200.7 184 62.5
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 1.0e-49 200.7 184 62.5
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 1.0e-49 200.7 184 62.5
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 1.0e-49 200.7 162 68.5
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 1.7e-49 199.9 183 62.8
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 2.2e-49 199.5 183 62.8
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 1.4e-48 196.8 179 57.0
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 2.5e-48 196.1 182 62.1
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 4.2e-48 195.3 188 56.9
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 4.2e-48 195.3 181 61.3
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 5.5e-48 194.9 184 66.8
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 1.2e-47 193.7 185 60.0
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 1.6e-47 193.4 181 66.3
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 2.7e-47 192.6 181 63.0
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 2.7e-47 192.6 181 63.0
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 1.0e-46 190.7 181 59.7
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.0e-46 190.7 120 78.3
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 1.4e-46 190.3 183 60.1
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 2.3e-46 189.5 183 59.6
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 3.0e-46 189.1 182 59.9
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 6.7e-46 188.0 179 57.5
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 1.1e-45 187.2 180 66.1
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 2.0e-45 186.4 178 60.1
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 4.4e-45 185.3 190 56.8
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 2.8e-44 182.6 178 55.6
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 4.8e-44 181.8 181 58.0
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 2.0e-42 176.4 178 62.9
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 2.0e-42 176.4 168 63.1
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 3.2e-40 169.1 131 64.9
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 3.6e-39 165.6 140 67.9
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 4.7e-39 165.2 139 66.9
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 8.8e-38 161.0 91 87.9
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 7.5e-37 157.9 143 65.7
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 4.8e-36 155.2 188 46.8
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 6.3e-36 154.8 188 46.3
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 7.7e-34 147.9 130 60.0
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 9.4e-32 141.0 102 68.6
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 2.7e-31 139.4 95 77.9
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 3.6e-31 139.0 112 60.7
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 6.1e-31 138.3 103 67.0
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 1.4e-30 137.1 103 66.0
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 5.2e-30 135.2 108 63.9
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 3.4e-29 132.5 98 73.5
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 2.2e-28 129.8 120 56.7
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 1.1e-27 127.5 107 57.9
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 3.1e-27 125.9 104 63.5
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 4.1e-27 125.6 103 64.1
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 2.5e-24 116.3 100 57.0
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 4.2e-24 115.5 129 50.4
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 1.2e-23 114.0 115 54.8
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 1.2e-23 114.0 93 64.5
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 3.6e-23 112.5 93 61.3
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 3.6e-23 112.5 185 40.5
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.2e-21 107.5 88 69.3
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 4.4e-21 105.5 98 54.1
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 4.4e-21 105.5 108 54.6
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 2.2e-20 103.2 99 53.5
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 7.0e-19 98.2 71 64.8
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 4.5e-18 95.5 114 45.6
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.0e-17 94.4 64 76.6
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 3.9e-17 92.4 98 44.9
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 5.0e-17 92.0 67 71.6
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 8.6e-17 91.3 155 44.5
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 1.9e-16 90.1 101 50.5
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 1.2e-15 87.4 94 50.0
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 5.4e-11 72.0 128 35.2


User provided reference genes

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