Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G3182 Cannabis sativa HOM05D003551 ORTHO05D004869 0.0e+00 1411.4 824 100.0
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 7.1e-289 997.3 829 68.8
CiPaw.06G064600 Carya illinoinensis HOM05D003551 ORTHO05D004869 2.3e-287 992.3 824 68.7
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 5.2e-284 981.1 820 67.7
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 1.4e-281 973.0 820 68.5
MD16G1105900 Malus domestica HOM05D003551 ORTHO05D004869 8.1e-277 957.2 822 68.5
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 5.8e-275 951.0 813 67.9
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 2.2e-274 949.1 820 64.3
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 2.9e-274 948.7 828 67.6
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 1.4e-273 946.4 845 68.0
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 1.9e-273 946.0 854 65.7
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 4.2e-273 944.9 821 66.7
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 7.1e-273 944.1 819 66.4
Rhsim12G0038300 Rhododendron simsii HOM05D003551 ORTHO05D004869 2.1e-272 942.6 833 66.9
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 4.6e-272 941.4 829 67.9
Glyma.11G244500 Glycine max HOM05D003551 ORTHO05D004869 1.8e-271 939.5 824 66.1
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 1.9e-270 936.0 832 67.8
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 8.1e-269 930.6 829 68.0
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 2.4e-268 929.1 820 66.5
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 4.0e-268 928.3 828 65.0
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 7.6e-267 924.1 820 68.5
Aqoxy3G00657 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 1.7e-266 922.9 823 67.1
Aqoxy3G01365 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 2.9e-266 922.2 820 67.6
Nitab4.5_0001290g0150 Nicotiana tabacum HOM05D003551 ORTHO05D004869 6.0e-264 914.4 836 66.7
Cpa.g.sc33.80 Carica papaya HOM05D003551 ORTHO05D004869 1.8e-263 912.9 854 60.2
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 3.9e-263 911.8 840 64.0
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 5.1e-263 911.4 842 64.5
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 9.6e-262 907.1 793 66.2
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 5.3e-260 901.4 826 63.8
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 2.0e-259 899.4 821 64.3
PSO017G3678 Papaver somniferum HOM05D003551 ORTHO05D004869 4.5e-259 898.3 814 65.4
RcHm_v2.0_Chr4g0432421 Rosa chinensis HOM05D003551 ORTHO05D004869 1.0e-258 897.1 818 65.5
PSO478G3924 Papaver somniferum HOM05D003551 ORTHO05D004869 1.7e-258 896.3 832 64.9
FAN12G2593 Fragaria x ananassa HOM05D003551 ORTHO05D004869 2.2e-258 896.0 826 62.6
PGSC0003DMG400004723 Solanum tuberosum HOM05D003551 ORTHO05D004869 1.9e-257 892.9 819 67.0
FAN22G1040 Fragaria x ananassa HOM05D003551 ORTHO05D004869 5.5e-257 891.3 825 63.0
arahy.Tifrunner.gnm1.ann1.A5BQBU Arachis hypogaea HOM05D003551 ORTHO05D004869 3.5e-256 888.6 820 62.0
Cfa009260 Carpinus fangiana HOM05D003551 ORTHO05D004869 4.6e-256 888.3 824 60.8
Ca_25128_v3 Cicer arietinum L. HOM05D003551 ORTHO05D004869 1.0e-255 887.1 832 65.5
arahy.Tifrunner.gnm1.ann1.MWLQ6N Arachis hypogaea HOM05D003551 ORTHO05D004869 6.7e-255 884.4 819 61.8
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 6.7e-255 884.4 835 65.5
Nitab4.5_0004725g0020 Nicotiana tabacum HOM05D003551 ORTHO05D004869 3.3e-254 882.1 830 64.5
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 1.3e-253 880.2 824 60.1
Medtr3g086350 Medicago truncatula HOM05D003551 ORTHO05D004869 2.2e-253 879.4 828 64.9
Peaxi162Scf00062g00716 Petunia axillaris HOM05D003551 ORTHO05D004869 2.2e-253 879.4 816 60.8
Duzib268G0822 Durio zibethinus HOM05D003551 ORTHO05D004869 3.7e-253 878.6 819 65.8
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 8.2e-253 877.5 827 64.0
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 1.1e-252 877.1 832 61.9
Migut.K00634 Erythranthe guttata HOM05D003551 ORTHO05D004869 1.1e-252 877.1 827 61.1
SalBow2G2049 Salvia bowleyana HOM05D003551 ORTHO05D004869 2.4e-252 875.9 822 62.0
PGR119G0237 Punica granatum HOM05D003551 ORTHO05D004869 1.5e-251 873.2 833 61.6
Solyc12g099890.2 Solanum lycopersicum HOM05D003551 ORTHO05D004869 2.0e-251 872.8 821 60.7
Lj1g0001310 Lotus japonicus HOM05D003551 ORTHO05D004869 3.4e-251 872.1 821 59.3
Lalb_Chr23g0277731 Lupinus albus HOM05D003551 ORTHO05D004869 1.3e-250 870.2 821 58.8
Sopen12g034510 Solanum pennellii HOM05D003551 ORTHO05D004869 1.3e-250 870.2 830 61.8
Oeu028968.1 Olea europaea HOM05D003551 ORTHO05D004869 5.0e-250 868.2 817 58.8
TWI75G1217 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 2.5e-249 865.9 823 64.5
MSTRG.7955 Avicennia marina HOM05D003551 ORTHO05D004869 1.2e-248 863.6 833 62.1
Haze_12293 Corylus avellana HOM05D003551 ORTHO05D004869 6.1e-248 861.3 852 58.3
Sed0023493 Sechium edule HOM05D003551 ORTHO05D004869 6.1e-248 861.3 813 60.0
PSO017G4772 Papaver somniferum HOM05D003551 ORTHO05D004869 1.1e-246 857.1 815 61.2
TWI34G1512 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 2.5e-246 855.9 807 60.8
Hund25033 Selenicereus undatus HOM05D003551 ORTHO05D004869 2.8e-245 852.4 823 62.5
PSO063G2135 Papaver somniferum HOM05D003551 ORTHO05D004869 5.3e-244 848.2 818 60.8
Sc04g0005980 Simmondsia chinensis HOM05D003551 ORTHO05D004869 1.7e-242 843.2 813 63.3
FAN17G0358 Fragaria x ananassa HOM05D003551 ORTHO05D004869 3.8e-242 842.0 878 60.1
DCAR_007035 Daucus carota HOM05D003551 ORTHO05D004869 1.4e-241 840.1 828 58.2
SGA_v2.0_scaffold92G28200 Striga asiatica HOM05D003551 ORTHO05D004869 2.5e-241 839.3 853 56.6
CAN.G484.3 Capsicum annuum HOM05D003551 ORTHO05D004869 2.1e-240 836.3 796 63.8
Zm00001eb069620 Zea mays HOM05D003551 ORTHO05D004869 3.9e-239 832.0 826 58.1
FvH4_4g25230 Fragaria vesca HOM05D003551 ORTHO05D004869 1.1e-238 830.5 776 62.0
TPR.G5678 Trifolium pratense HOM05D003551 ORTHO05D004869 4.4e-238 828.6 819 62.5
Aa31LG1G1640 Aethionema arabicum HOM05D003551 ORTHO05D004869 5.7e-238 828.2 828 59.3
AUR62014112 Chenopodium quinoa HOM05D003551 ORTHO05D004869 7.4e-238 827.8 823 59.7
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 1.7e-237 826.6 841 61.4
Oeu014152.4 Olea europaea HOM05D003551 ORTHO05D004869 6.3e-237 824.7 811 57.6
LjContig00312_ERROPOS870357g0004032 Lotus japonicus HOM05D003551 ORTHO05D004869 3.4e-235 818.9 817 59.9
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 5.0e-234 815.1 826 59.2
EL10Ac6g14297 Beta vulgaris HOM05D003551 ORTHO05D004869 7.2e-233 811.2 818 58.7
Lsat_1_v5_gn_8_153780 Lactuca sativa HOM05D003551 ORTHO05D004869 7.2e-233 811.2 824 57.9
Cc11_g16150 Coffea canephora HOM05D003551 ORTHO05D004869 5.3e-228 795.0 799 59.1
vmacro01109 Vaccinium macrocarpon HOM05D003551 ORTHO05D004869 2.7e-224 782.7 821 56.4
HPP92_011125 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.4e-222 775.4 811 54.1
Lj6C816T3 Lonicera japonica HOM05D003551 ORTHO05D004869 9.4e-217 757.7 766 57.3
C08p46730 Brassica napus HOM05D003551 ORTHO05D004869 8.8e-215 751.1 834 58.0
AL1G24840 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 2.0e-214 750.0 837 55.9
Thecc.02G267000 Theobroma cacao HOM05D003551 ORTHO05D004869 9.8e-214 747.7 691 66.6
AUR62002805 Chenopodium quinoa HOM05D003551 ORTHO05D004869 2.2e-213 746.5 794 56.5
Thhalv10006828m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 1.2e-211 740.7 832 56.7
BolC8t52212H Brassica oleracea HOM05D003551 ORTHO05D004869 2.0e-211 740.0 834 58.0
A09p63240 Brassica napus HOM05D003551 ORTHO05D004869 5.0e-210 735.3 839 57.3
BraA09t41676Z Brassica rapa HOM05D003551 ORTHO05D004869 9.5e-209 731.1 839 57.1
Carub.0003s0103 Capsella rubella HOM05D003551 ORTHO05D004869 1.2e-206 724.2 835 55.7
Sp1g11680 Schrenkiella parvula HOM05D003551 ORTHO05D004869 5.7e-206 721.8 837 54.4
SalBow5G3625 Salvia bowleyana HOM05D003551 ORTHO05D004869 4.5e-203 712.2 853 48.7
Thhalv10005577m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 8.6e-202 708.0 828 55.9
AT1G13160 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 2.1e-200 703.4 831 54.0
Nn4g22519 Nelumbo nucifera HOM05D003551 ORTHO05D004869 3.6e-200 702.6 657 64.2
Carub.0001s1289 Capsella rubella HOM05D003551 ORTHO05D004869 2.3e-194 683.3 828 53.7
CDE02G2789 Ceratophyllum demersum HOM05D003551 ORTHO05D004869 8.6e-194 681.4 821 53.0
Aqoxy6G03052 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 4.7e-192 675.6 817 51.3
CARHR068650 Cardamine hirsuta HOM05D003551 ORTHO05D004869 4.4e-190 669.1 824 52.4
AL7G20520 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 3.2e-188 662.9 926 47.0
arahy.Tifrunner.gnm1.ann1.5TZZ24 Arachis hypogaea HOM05D003551 ORTHO05D004869 3.2e-188 662.9 812 48.8
arahy.Tifrunner.gnm1.ann1.X9TT4V Arachis hypogaea HOM05D003551 ORTHO05D004869 1.7e-186 657.1 812 48.4
arahy.Tifrunner.gnm1.ann1.006XS9 Arachis hypogaea HOM05D003551 ORTHO05D004869 1.1e-185 654.4 812 48.4
Mapoly0084s0017 Marchantia polymorpha HOM05D003551 ORTHO05D004869 1.6e-179 634.0 827 48.1
Pp3c21_560 Physcomitrium patens HOM05D003551 ORTHO05D004869 1.1e-177 627.9 831 49.3
AT4G31520 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 7.3e-169 598.6 771 50.7
ATR0824G183 Amborella trichopoda HOM05D003551 ORTHO05D004869 1.2e-168 597.8 437 69.8
SalBow5G3177 Salvia bowleyana HOM05D003551 ORTHO05D004869 1.8e-167 594.0 865 43.4
Os04g0630000 Oryza sativa ssp. japonica HOM05D003551 ORTHO05D004869 2.8e-160 570.1 585 63.6
unitig_22.g6420 Utricularia gibba HOM05D003551 ORTHO05D004869 3.0e-154 550.1 645 60.0
AagrBONN_evm.TU.Sc2ySwM_344.4679 Anthoceros agrestis HOM05D003551 ORTHO05D004869 6.9e-151 538.9 734 48.9
Pp3c21_561 Physcomitrium patens HOM05D003551 ORTHO05D004869 9.9e-150 535.0 698 50.7
SMO197G0095 Selaginella moellendorffii HOM05D003551 ORTHO05D004869 3.7e-144 516.5 753 48.1
QL04p087069 Quercus lobata HOM05D003551 ORTHO05D004869 2.1e-139 500.7 566 61.0
CBR_g23824 Chara braunii HOM05D003551 ORTHO05D004869 1.3e-138 498.0 875 45.4
Actinidia01370 Actinidia chinensis HOM05D003551 ORTHO05D004869 9.7e-137 491.9 469 60.1
AUR62020542 Chenopodium quinoa HOM05D003551 ORTHO05D004869 7.4e-129 465.7 861 41.1
TAR374G0642 Trochodendron aralioides HOM05D003551 ORTHO05D004869 3.1e-127 460.3 478 65.1
TAR374G0468 Trochodendron aralioides HOM05D003551 ORTHO05D004869 3.4e-126 456.8 308 76.0
Atru.chr11.1974 Acer truncatum HOM05D003551 ORTHO05D004869 4.5e-126 456.4 347 69.2
SEGI_37161 Sequoiadendron giganteum HOM05D003551 ORTHO05D004869 1.1e-124 451.8 528 52.7
CARHR013530 Cardamine hirsuta HOM05D003551 ORTHO05D004869 1.1e-121 441.8 540 59.8
Atru.chr11.1973 Acer truncatum HOM05D003551 ORTHO05D004869 1.9e-108 397.9 434 62.7
PRCOL_00005223 Prasinoderma coloniale HOM05D003551 ORTHO05D004869 3.0e-106 390.6 824 39.6
FAN07G2018 Fragaria x ananassa HOM05D003551 ORTHO05D004869 2.7e-102 377.5 276 70.7
SHI17843 Sapria himalayana HOM05D003551 ORTHO05D000023 1.3e-101 375.2 459 46.6
Medtr4g006000 Medicago truncatula HOM05D003551 ORTHO05D004869 1.2e-99 368.6 531 44.8
Cre06.g277050 Chlamydomonas reinhardtii HOM05D003551 ORTHO05D004869 3.1e-95 354.0 896 37.3
MCO05G293 Micromonas commoda HOM05D003551 ORTHO05D004869 3.0e-90 337.4 800 33.8
TPR.G18550 Trifolium pratense HOM05D003551 ORTHO05D004869 4.1e-87 327.0 545 38.9
AUR62015661 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.3e-85 322.0 519 42.8
Medtr4g005970 Medicago truncatula HOM05D003551 ORTHO05D004869 1.3e-80 305.4 445 44.5
Cfa023305 Carpinus fangiana HOM05D003551 ORTHO05D004869 1.1e-63 249.2 506 33.4
ATR0824G018 Amborella trichopoda HOM05D003551 ORTHO05D004869 1.4e-58 232.3 372 51.3
Actinidia08115 Actinidia chinensis HOM05D003551 ORTHO05D004869 5.2e-58 230.3 204 63.2
Sc04g0005970 Simmondsia chinensis HOM05D003551 ORTHO05D004869 2.5e-52 211.5 395 50.4
Actinidia01371 Actinidia chinensis HOM05D002413 ORTHO05D002638 3.5e-46 191.0 170 61.2
HPP92_027088 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.3e-45 189.1 413 36.6
unitig_22.g6421 Utricularia gibba HOM05D003551 ORTHO05D004869 2.6e-41 174.9 143 62.2
HPP92_027649 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.2e-40 171.8 328 38.7
HPP92_028576 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.6e-38 164.1 307 39.7
BcaB04g19498 Brassica carinata HOM05D003551 ORTHO05D004869 1.4e-34 152.5 137 59.1
Zm00001eb279220 Zea mays HOM05D003551 ORTHO05D004869 2.7e-30 138.3 129 61.2
Actinidia08116 Actinidia chinensis HOM05D003551 ORTHO05D004869 3.3e-28 131.3 135 56.3
HPP92_006539 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.3e-28 131.0 129 55.8
BcaB06g26385 Brassica carinata HOM05D003551 ORTHO05D016818 6.9e-26 123.6 105 58.1
BcaB07g33803 Brassica carinata HOM05D003551 ORTHO05D032399 1.0e-24 119.8 96 61.5
HPP92_006576 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.5e-23 114.0 105 61.0
arahy.Tifrunner.gnm1.ann1.LJ7GP5 Arachis hypogaea HOM05D003551 ORTHO05D004869 2.1e-22 112.1 117 53.8
HPP92_027653 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.3e-19 102.8 306 32.7
HPP92_028550 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.4e-18 99.4 98 58.2
HPP92_006872 Vanilla planifolia HOM05D003551 ORTHO05D016818 2.4e-18 98.6 85 55.3
HPP92_006854 Vanilla planifolia HOM05D003551 ORTHO05D016818 6.9e-18 97.1 81 58.0
Migut.C01140 Erythranthe guttata HOM05D003551 ORTHO05D004869 4.5e-17 94.4 82 61.0
HPP92_026938 Vanilla planifolia HOM05D003551 ORTHO05D004869 7.7e-17 93.6 368 28.3
HPP92_006538 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.5e-15 88.6 82 59.8
HPP92_027078 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.2e-15 88.2 603 22.6
HPP92_026598 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.2e-14 86.3 80 56.2
HPP92_027994 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.6e-14 85.9 165 37.6
HPP92_006855 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.6e-14 84.3 261 30.3
Lsat_1_v5_gn_1_12340 Lactuca sativa HOM05D003551 ORTHO05D004869 3.9e-13 81.3 136 42.6
HPP92_028371 Vanilla planifolia HOM05D003551 ORTHO05D004869 8.8e-13 80.1 100 52.0
DCAR_030669 Daucus carota HOM05D001959 ORTHO05D006343 1.3e-11 76.3 71 62.0
HPP92_027083 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.3e-11 76.3 164 35.4
Lalb_Chr05g0228661 Lupinus albus HOM05D003551 ORTHO05D048508 1.7e-11 75.9 131 42.0
HPP92_028370 Vanilla planifolia HOM05D003551 ORTHO05D016818 6.3e-11 73.9 73 49.3
DCAR_030665 Daucus carota HOM05D005171 ORTHO05D006343 3.4e-09 68.2 62 66.1
Sed0014055 Sechium edule HOM05D003551 ORTHO05D004869 3.4e-09 68.2 57 59.6
HPP92_026933 Vanilla planifolia HOM05D015067 ORTHO05D427257 2.2e-08 65.5 41 70.7
Lj6A816T56 Lonicera japonica HOM05D003551 ORTHO05D004869 5.0e-08 64.3 51 62.7
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 6.5e-08 63.9 62 56.5
HPP92_006537 Vanilla planifolia HOM05D003551 ORTHO05D431158 1.4e-07 62.8 66 53.0
HPP92_006540 Vanilla planifolia HOM05D003551 ORTHO05D016818 4.2e-07 61.2 64 48.4
arahy.Tifrunner.gnm1.ann1.C8ML0J Arachis hypogaea HOM05D003551 ORTHO05D004869 7.2e-07 60.5 70 47.1
BcaB07g32274 Brassica carinata HOM05D003551 ORTHO05D004869 9.4e-07 60.1 62 48.4
HPP92_027652 Vanilla planifolia HOM05D003551 ORTHO05D016818 3.6e-06 58.2 57 50.9
A04p22140 Brassica napus HOM05D003551 ORTHO05D103594 4.7e-06 57.8 45 57.8


User provided reference genes

Program Settings