Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 0.0e+00 1154.4 676 100.0
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 9.8e-204 714.1 684 58.3
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 1.5e-199 700.3 677 57.9
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 2.8e-198 696.0 682 57.3
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 9.8e-196 687.6 684 56.7
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 1.1e-194 684.1 678 57.4
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 1.3e-192 677.2 688 56.0
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 1.6e-190 670.2 680 56.6
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 2.8e-190 669.5 680 56.8
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 3.1e-189 666.0 677 55.4
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 4.4e-188 662.1 681 55.9
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 5.8e-188 661.8 686 56.0
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 5.8e-188 661.8 691 55.1
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 5.8e-188 661.8 683 55.3
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 3.7e-187 659.1 681 55.7
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 5.4e-186 655.2 681 55.7
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 7.3e-183 644.8 683 54.3
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 9.6e-183 644.4 717 53.6
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 6.8e-181 638.3 681 54.2
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 4.4e-180 635.6 679 53.3
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.0e-176 624.4 684 54.2
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 3.6e-174 615.9 691 52.7
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 3.6e-174 615.9 686 53.5
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 1.8e-173 613.6 651 54.5
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.3e-171 607.4 646 53.9
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 8.4e-171 604.7 635 55.4
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 1.1e-170 604.4 683 52.3
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 1.4e-170 604.0 683 52.0
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 7.9e-169 598.2 717 57.0
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 3.0e-168 596.3 717 57.5
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 4.8e-166 589.0 677 52.6
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 6.2e-166 588.6 688 52.6
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 1.8e-165 587.0 687 50.9
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 5.8e-164 582.0 677 52.0
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 7.1e-162 575.1 701 50.6
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 2.1e-161 573.5 679 55.1
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 1.3e-160 570.9 672 49.4
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 2.3e-160 570.1 679 53.3
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 6.7e-160 568.5 685 49.3
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 2.1e-158 563.5 633 52.8
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 2.4e-157 560.1 695 48.6
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 2.0e-156 557.0 690 50.1
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 2.0e-156 557.0 702 48.6
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 7.6e-156 555.1 678 48.2
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 1.7e-155 553.9 687 48.8
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 2.9e-155 553.1 693 48.9
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 6.5e-155 552.0 694 48.6
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 3.9e-152 542.7 691 48.6
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 3.9e-152 542.7 692 47.7
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 8.7e-152 541.6 682 49.1
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 2.5e-151 540.0 675 49.3
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 2.5e-151 540.0 581 53.7
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 5.7e-151 538.9 688 47.8
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 1.3e-150 537.7 675 49.2
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 3.7e-150 536.2 691 49.1
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 5.8e-148 528.9 689 55.7
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 5.8e-148 528.9 689 55.7
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 7.6e-148 528.5 687 48.2
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 7.1e-146 521.9 684 49.1
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 1.2e-145 521.2 683 49.2
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 7.4e-143 511.9 692 47.4
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 1.6e-142 510.8 675 48.4
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 2.8e-142 510.0 695 45.6
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 2.8e-142 510.0 673 48.4
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 2.4e-141 506.9 652 49.1
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 4.1e-141 506.1 545 53.4
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 6.9e-141 505.4 705 45.8
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 9.0e-141 505.0 686 46.2
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 2.6e-140 503.4 696 45.5
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 3.8e-139 499.6 698 45.6
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 1.9e-138 497.3 697 44.8
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 7.2e-138 495.4 692 45.7
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 1.4e-136 491.1 694 46.3
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 1.4e-136 491.1 675 46.1
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 1.8e-136 490.7 669 45.7
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 3.3e-135 486.5 701 46.8
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 1.7e-131 474.2 695 45.5
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 1.1e-130 471.5 678 43.8
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 9.4e-130 468.4 685 44.7
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 9.4e-130 468.4 685 44.7
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 4.7e-129 466.1 678 49.9
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 2.6e-127 460.3 695 46.8
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 4.4e-127 459.5 677 43.6
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 3.7e-126 456.4 687 46.1
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 1.8e-125 454.1 681 45.5
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 2.2e-123 447.2 684 45.2
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 3.8e-123 446.4 693 42.7
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 6.5e-123 445.7 693 42.7
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 1.8e-120 437.6 682 45.3
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 3.0e-120 436.8 686 44.5
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 8.8e-120 435.3 684 45.3
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 6.3e-118 429.1 679 43.3
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 3.5e-116 423.3 678 49.1
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 1.4e-112 411.4 635 47.1
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 2.0e-111 407.5 675 47.7
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 6.3e-110 402.5 682 41.5
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 1.8e-109 401.0 454 51.5
Actinidia24562 Actinidia chinensis HOM05D005482 ORTHO05D006502 5.2e-104 382.9 488 48.0
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 7.7e-100 369.0 356 56.7
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 1.6e-97 361.3 406 51.0
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 2.4e-93 347.4 714 39.1
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 7.8e-92 342.4 647 38.5
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 5.8e-87 326.2 298 57.4
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 3.6e-81 307.0 475 42.3
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 5.8e-79 299.7 466 42.5
GSVIVG01002660001 Vitis vinifera HOM05D005482 ORTHO05D006502 1.3e-62 245.4 309 49.8
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 6.9e-56 223.0 541 34.8
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 4.9e-54 216.9 277 47.7
ATR0767G089 Amborella trichopoda HOM05D005482 ORTHO05D006502 2.4e-48 198.0 277 41.9
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 2.4e-48 198.0 180 56.1
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 5.5e-45 186.8 529 31.4
Haze_03887 Corylus avellana HOM05D005482 ORTHO05D006502 9.3e-45 186.0 140 67.1
CiPaw.10G105100 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.1e-37 162.5 113 69.9
Solyc01g056590.2 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.3e-35 155.6 127 63.8
TAR381G1343 Trochodendron aralioides HOM05D005482 ORTHO05D006502 1.3e-35 155.6 351 36.8
CiPaw.01G172300 Carya illinoinensis HOM05D005482 ORTHO05D006502 3.0e-35 154.5 151 55.6
CDE07G2034 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 3.0e-35 154.5 98 76.5
SMO203G0252 Selaginella moellendorffii HOM05D005482 ORTHO05D006502 6.3e-33 146.7 515 28.9
CDE07G0659 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 3.1e-32 144.4 178 43.3
Mapoly0105s0033 Marchantia polymorpha HOM05D005482 ORTHO05D006502 1.2e-28 132.5 581 23.6
AagrBONN_evm.TU.Sc2ySwM_117.475 Anthoceros agrestis HOM05D005482 ORTHO05D006502 1.8e-27 128.6 568 27.1
Oeu017110.1 Olea europaea HOM05D005482 ORTHO05D006502 1.9e-26 125.2 133 52.6
CiPaw.03G215800 Carya illinoinensis HOM05D005482 ORTHO05D006502 4.3e-26 124.0 75 77.3
Actinidia28819 Actinidia chinensis HOM05D000138 ORTHO05D000078 2.2e-25 121.7 574 26.0
ECA246G4867 Erigeron canadensis HOM05D005482 ORTHO05D006502 1.4e-24 119.0 141 51.1
RcHm_v2.0_Chr2g0110871 Rosa chinensis HOM05D005482 ORTHO05D006502 1.8e-24 118.6 114 56.1
BcaC01g02797 Brassica carinata HOM05D005482 ORTHO05D006502 2.5e-21 108.2 133 48.1
BolC3t18285H Brassica oleracea HOM05D005482 ORTHO05D006502 1.3e-17 95.9 237 42.2
Sabra15G0079600 Salix brachista HOM05D005482 ORTHO05D006502 6.3e-17 93.6 87 57.5
CDE07G1566 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 7.7e-15 86.7 129 48.1
HanXRQChr04g0112001 Helianthus annuus HOM05D005482 ORTHO05D006502 3.8e-14 84.3 69 69.6
ATR0767G001 Amborella trichopoda HOM05D005482 ORTHO05D006502 3.2e-13 81.3 132 43.2
C03p60240 Brassica napus HOM05D005482 ORTHO05D006502 3.6e-12 77.8 224 33.5
CDE07G1819 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 7.9e-12 76.6 79 41.8
BcaB04g20020 Brassica carinata HOM05D005482 ORTHO05D006502 8.8e-11 73.2 67 52.2
TAR375G0200 Trochodendron aralioides HOM05D005482 ORTHO05D006502 2.8e-09 68.2 61 60.7
Solyc02g062815.1 Solanum lycopersicum HOM05D005482 ORTHO05D006502 3.5e-07 61.2 49 53.1


User provided reference genes

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