Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 9.3e-113 410.2 208 100.0
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 7.6e-107 390.6 206 94.2
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 1.0e-106 390.2 206 94.7
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 1.7e-106 389.4 206 93.7
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 2.2e-106 389.0 208 93.8
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 2.2e-106 389.0 206 94.2
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 2.2e-106 389.0 206 94.2
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 2.9e-106 388.7 206 94.2
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 3.8e-106 388.3 206 94.7
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 5.0e-106 387.9 206 94.2
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 5.0e-106 387.9 206 93.7
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 6.5e-106 387.5 206 93.7
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 6.5e-106 387.5 206 93.7
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 6.5e-106 387.5 206 94.2
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 8.5e-106 387.1 206 93.2
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 8.5e-106 387.1 206 94.2
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 8.5e-106 387.1 206 93.7
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 1.1e-105 386.7 206 93.7
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 1.4e-105 386.3 206 92.7
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 1.4e-105 386.3 206 93.2
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.4e-105 386.3 206 94.2
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 1.4e-105 386.3 206 94.2
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 2.5e-105 385.6 206 93.7
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 4.2e-105 384.8 206 93.7
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 5.5e-105 384.4 206 92.7
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 5.5e-105 384.4 206 92.7
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 5.5e-105 384.4 206 92.2
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 7.2e-105 384.0 206 92.7
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 7.2e-105 384.0 212 92.0
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 9.4e-105 383.6 206 93.7
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 1.2e-104 383.3 206 93.2
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 1.6e-104 382.9 206 93.2
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.6e-104 382.9 206 92.2
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 1.6e-104 382.9 206 93.2
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 2.1e-104 382.5 206 93.2
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 2.1e-104 382.5 206 91.7
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 2.7e-104 382.1 206 92.2
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 3.6e-104 381.7 206 91.7
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 6.1e-104 380.9 206 90.3
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 7.9e-104 380.6 206 92.2
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 1.0e-103 380.2 206 91.7
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 1.0e-103 380.2 206 90.8
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 3.0e-103 378.6 206 91.7
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 3.0e-103 378.6 206 91.7
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 3.9e-103 378.3 206 92.2
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 3.9e-103 378.3 206 91.7
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 5.1e-103 377.9 206 91.7
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 5.1e-103 377.9 206 90.8
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 6.7e-103 377.5 206 90.3
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 6.7e-103 377.5 203 93.1
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 6.7e-103 377.5 211 90.5
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 8.8e-103 377.1 206 90.8
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 8.8e-103 377.1 206 91.3
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 8.8e-103 377.1 206 91.7
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 1.1e-102 376.7 206 90.3
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 1.1e-102 376.7 205 90.2
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 1.5e-102 376.3 206 91.7
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 1.9e-102 375.9 206 91.3
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 2.5e-102 375.6 206 90.3
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 3.3e-102 375.2 206 90.3
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 3.3e-102 375.2 205 89.8
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 3.3e-102 375.2 208 90.9
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 7.4e-102 374.0 206 89.3
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 9.7e-102 373.6 206 89.3
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 9.7e-102 373.6 206 89.3
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 2.2e-101 372.5 206 90.8
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 2.8e-101 372.1 205 89.8
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 2.8e-101 372.1 205 90.7
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 2.8e-101 372.1 209 89.5
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 3.7e-101 371.7 206 91.3
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 4.8e-101 371.3 209 89.5
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 6.3e-101 370.9 207 89.9
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 6.3e-101 370.9 206 89.8
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 1.1e-100 370.2 216 86.1
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 1.4e-100 369.8 206 89.3
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 1.4e-100 369.8 205 90.2
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 1.8e-100 369.4 206 89.3
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 2.4e-100 369.0 207 89.4
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 2.4e-100 369.0 207 89.4
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 3.1e-100 368.6 207 89.4
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 3.1e-100 368.6 209 88.5
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 3.1e-100 368.6 209 88.5
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 5.3e-100 367.9 207 89.4
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 5.3e-100 367.9 207 89.4
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 3.4e-99 365.2 206 88.3
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 4.5e-99 364.8 207 88.9
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 5.9e-99 364.4 207 88.9
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 5.9e-99 364.4 206 86.9
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 7.7e-99 364.0 206 90.3
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 1.0e-98 363.6 196 92.9
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 1.0e-98 363.6 206 90.3
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 2.9e-98 362.1 207 87.9
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 8.5e-98 360.5 207 87.4
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 5.5e-97 357.8 206 85.0
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 5.5e-97 357.8 206 84.5
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 1.2e-96 356.7 206 84.5
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 5.1e-95 351.3 206 85.9
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.0e-94 349.4 205 85.4
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.0e-94 349.4 205 85.4
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 3.3e-94 348.6 205 85.4
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 9.7e-94 347.1 207 85.5
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 3.1e-92 342.0 205 83.4
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 1.5e-91 339.7 177 94.4
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 2.6e-91 339.0 176 94.3
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 2.9e-90 335.5 206 84.0
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 5.0e-90 334.7 177 93.2
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 1.6e-88 329.7 206 83.5
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 1.6e-88 329.7 177 92.7
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 6.7e-87 324.3 176 90.3
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 4.4e-86 321.6 177 87.6
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 1.1e-84 317.0 203 82.3
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 1.4e-84 316.6 190 83.2
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 3.1e-84 315.5 206 73.3
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 9.1e-84 313.9 206 80.6
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 1.2e-78 297.0 167 86.8
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 7.5e-78 294.3 156 94.2
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 2.8e-77 292.4 205 73.7
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 4.1e-76 288.5 154 91.6
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 2.0e-75 286.2 207 73.9
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 5.2e-71 271.6 234 64.5
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 7.0e-68 261.2 208 67.8
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 1.6e-67 260.0 203 62.1
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 7.7e-67 257.7 202 62.4
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 1.6e-64 250.0 200 59.0
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 2.8e-64 249.2 197 61.9
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 1.8e-63 246.5 166 78.3
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 3.5e-59 232.3 196 56.6
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 2.3e-58 229.6 133 91.0
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 6.6e-58 228.0 118 94.1
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 4.4e-54 215.3 207 52.7
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 2.9e-53 212.6 149 75.2
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 3.7e-53 212.2 148 73.6
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 1.9e-52 209.9 207 54.1
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 2.1e-48 196.4 197 48.2
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 6.2e-48 194.9 207 55.6
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 2.2e-45 186.4 196 44.9
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 7.0e-44 181.4 230 43.5
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 1.7e-42 176.8 160 64.4
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 4.3e-41 172.2 206 50.5
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 5.6e-41 171.8 98 85.7
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 6.6e-34 148.3 206 46.6
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 1.4e-31 140.6 94 78.7
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 3.1e-31 139.4 99 73.7
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 1.5e-30 137.1 197 37.6
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 2.9e-29 132.9 74 87.8
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 1.9e-28 130.2 92 72.8
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 2.1e-27 126.7 83 74.7
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 2.3e-26 123.2 135 54.1
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 2.1e-24 116.7 58 89.7
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 3.1e-23 112.8 82 69.5
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 9.0e-23 111.3 73 79.5
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 4.4e-22 109.0 60 88.3
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 3.8e-13 79.3 61 63.9
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 3.9e-10 69.3 62 64.5
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 1.4e-07 60.8 38 73.7
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 2.4e-07 60.1 39 66.7
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 9.0e-07 58.2 58 62.1
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 5.8e-06 55.5 137 24.1


User provided reference genes

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