Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G3113 Cannabis sativa HOM05D005067 ORTHO05D006105 7.0e-50 200.3 100 100.0
Gohir.D13G224500 Gossypium hirsutum HOM05D005067 ORTHO05D006105 7.1e-42 173.7 100 83.0
Gorai.013G255300 Gossypium raimondii HOM05D005067 ORTHO05D006105 1.2e-41 172.9 100 83.0
CSS0007870 Camellia sinensis var. sinensis HOM05D005067 ORTHO05D006105 2.1e-41 172.2 95 84.2
CSS0001472 Camellia sinensis var. sinensis HOM05D005067 ORTHO05D006105 3.5e-41 171.4 95 83.2
Gohir.A13G220500 Gossypium hirsutum HOM05D005067 ORTHO05D006105 4.6e-41 171.0 100 83.0
CiPaw.06G112100 Carya illinoinensis HOM05D005067 ORTHO05D006105 7.8e-41 170.2 95 84.2
Duzib168G1737 Durio zibethinus HOM05D005067 ORTHO05D006105 1.3e-40 169.5 95 81.1
Actinidia23110 Actinidia chinensis HOM05D005067 ORTHO05D006105 3.9e-40 167.9 95 80.0
Ca_01855_v3 Cicer arietinum L. HOM05D005067 ORTHO05D006105 6.6e-40 167.2 93 81.7
Medtr2g034290 Medicago truncatula HOM05D005067 ORTHO05D006105 8.6e-40 166.8 93 81.7
TPR.G27257 Trifolium pratense HOM05D005067 ORTHO05D006105 8.6e-40 166.8 93 81.7
Gorai.006G119400 Gossypium raimondii HOM05D005067 ORTHO05D006105 1.1e-39 166.4 93 79.6
Prupe.4G224700 Prunus persica HOM05D005067 ORTHO05D006105 1.1e-39 166.4 93 82.8
Sabra03G0115500 Salix brachista HOM05D005067 ORTHO05D006105 1.1e-39 166.4 93 82.8
vmacro05123 Vaccinium macrocarpon HOM05D005067 ORTHO05D006105 1.5e-39 166.0 95 80.0
Potri.001G071900 Populus trichocarpa HOM05D005067 ORTHO05D006105 1.9e-39 165.6 95 81.1
Thecc.09G262100 Theobroma cacao HOM05D005067 ORTHO05D006105 1.9e-39 165.6 95 77.9
MD03G1192500 Malus domestica HOM05D005067 ORTHO05D006105 5.6e-39 164.1 93 80.6
MD11G1209000 Malus domestica HOM05D005067 ORTHO05D006105 5.6e-39 164.1 93 81.7
Oeu003268.1 Olea europaea HOM05D005067 ORTHO05D006105 7.3e-39 163.7 95 81.1
HanXRQChr05g0134241 Helianthus annuus HOM05D005067 ORTHO05D006105 9.5e-39 163.3 95 81.1
Hma1.2p1_0738F.1_g211080 Hydrangea macrophylla HOM05D005067 ORTHO05D006105 9.5e-39 163.3 95 78.9
Psat1g160400 Pisum sativum HOM05D005067 ORTHO05D006105 1.2e-38 162.9 93 79.6
CiPaw.05G096900 Carya illinoinensis HOM05D005067 ORTHO05D006105 1.6e-38 162.5 95 78.9
Potri.003G159100 Populus trichocarpa HOM05D005067 ORTHO05D006105 2.1e-38 162.2 95 78.9
GSVIVG01001135001 Vitis vinifera HOM05D005067 ORTHO05D006105 2.1e-38 162.2 95 78.9
COL.COLO4_25264 Corchorus olitorius HOM05D005067 ORTHO05D006105 2.8e-38 161.8 95 75.8
Gohir.D09G102100 Gossypium hirsutum HOM05D005067 ORTHO05D006105 2.8e-38 161.8 95 76.8
Manes.08G098600 Manihot esculenta HOM05D005067 ORTHO05D006105 2.8e-38 161.8 95 80.0
AUR62004226 Chenopodium quinoa HOM05D005067 ORTHO05D006105 4.7e-38 161.0 95 81.1
Hund07355 Selenicereus undatus HOM05D005067 ORTHO05D006105 4.7e-38 161.0 95 80.0
TAR723G0001 Trochodendron aralioides HOM05D005067 ORTHO05D006105 4.7e-38 161.0 95 78.9
Cfa012979 Carpinus fangiana HOM05D005067 ORTHO05D006105 6.2e-38 160.6 95 76.8
Haze_21343 Corylus avellana HOM05D005067 ORTHO05D006105 8.1e-38 160.2 95 76.8
Haze_21349 Corylus avellana HOM05D005067 ORTHO05D006105 8.1e-38 160.2 95 76.8
Medtr8g012945 Medicago truncatula HOM05D005067 ORTHO05D006105 8.1e-38 160.2 93 77.4
MELO3C026758.2 Cucumis melo HOM05D005067 ORTHO05D006105 1.1e-37 159.8 95 78.9
Lsat_1_v5_gn_1_32740 Lactuca sativa HOM05D005067 ORTHO05D006105 1.1e-37 159.8 95 78.9
AUR62013622 Chenopodium quinoa HOM05D005067 ORTHO05D006105 1.4e-37 159.5 95 80.0
Lj3g0015814 Lotus japonicus HOM05D005067 ORTHO05D006105 1.4e-37 159.5 96 75.0
PSO541G3634 Papaver somniferum HOM05D005067 ORTHO05D006105 1.4e-37 159.5 94 80.9
Phvul.009G181800 Phaseolus vulgaris HOM05D005067 ORTHO05D006105 1.4e-37 159.5 93 80.6
Sed0016956 Sechium edule HOM05D005067 ORTHO05D006105 1.4e-37 159.5 95 78.9
Glyma.04G179100 Glycine max HOM05D005067 ORTHO05D006105 1.8e-37 159.1 93 79.6
PSO675G6660 Papaver somniferum HOM05D005067 ORTHO05D006105 1.8e-37 159.1 94 80.9
Duzib150G1019 Durio zibethinus HOM05D005067 ORTHO05D006105 2.4e-37 158.7 95 74.7
Sp2g18390 Schrenkiella parvula HOM05D005067 ORTHO05D006105 2.4e-37 158.7 100 75.0
Aa31LG3G14180 Aethionema arabicum HOM05D005067 ORTHO05D006105 3.1e-37 158.3 100 77.0
AT5G47890 Arabidopsis thaliana HOM05D005067 ORTHO05D006105 3.1e-37 158.3 100 76.0
BcaC03g17619 Brassica carinata HOM05D005067 ORTHO05D006105 4.0e-37 157.9 100 76.0
BcaC04g23800 Brassica carinata HOM05D005067 ORTHO05D006105 4.0e-37 157.9 100 75.0
A06p39480 Brassica napus HOM05D005067 ORTHO05D006105 4.0e-37 157.9 100 75.0
C07p38790 Brassica napus HOM05D005067 ORTHO05D006105 4.0e-37 157.9 100 75.0
BolC7t44398H Brassica oleracea HOM05D005067 ORTHO05D006105 4.0e-37 157.9 100 75.0
BolC9t53383H Brassica oleracea HOM05D005067 ORTHO05D006105 4.0e-37 157.9 100 75.0
BraA06t26863Z Brassica rapa HOM05D005067 ORTHO05D006105 4.0e-37 157.9 100 75.0
Glyma.06G185600 Glycine max HOM05D005067 ORTHO05D006105 4.0e-37 157.9 93 78.5
C02p56190 Brassica napus HOM05D005067 ORTHO05D006105 5.2e-37 157.5 100 75.0
BcaB07g30049 Brassica carinata HOM05D005067 ORTHO05D006105 6.8e-37 157.1 100 75.0
RcHm_v2.0_Chr5g0041661 Rosa chinensis HOM05D005067 ORTHO05D006105 6.8e-37 157.1 93 78.5
Thhalv10005189m.g Eutrema salsugineum HOM05D005067 ORTHO05D006105 8.9e-37 156.8 100 75.0
Lalb_Chr12g0209921 Lupinus albus HOM05D005067 ORTHO05D006105 8.9e-37 156.8 91 78.0
PGR102G0153 Punica granatum HOM05D005067 ORTHO05D006105 8.9e-37 156.8 91 78.0
C09p04540 Brassica napus HOM05D005067 ORTHO05D006105 1.2e-36 156.4 100 74.0
Ciclev10026832m.g Citrus clementina HOM05D005067 ORTHO05D006105 1.2e-36 156.4 95 73.7
Migut.D02119 Erythranthe guttata HOM05D005067 ORTHO05D006105 1.2e-36 156.4 96 76.0
Hund21907 Selenicereus undatus HOM05D005067 ORTHO05D006105 1.2e-36 156.4 109 71.6
THA.LOC104807181 Tarenaya hassleriana HOM05D005067 ORTHO05D006105 1.2e-36 156.4 100 75.0
Dinv26521 Davidia involucrata HOM05D005067 ORTHO05D006105 1.5e-36 156.0 94 74.5
ECA238G3917 Erigeron canadensis HOM05D005067 ORTHO05D006105 1.5e-36 156.0 90 81.1
arahy.Tifrunner.gnm1.ann1.35C0M2 Arachis hypogaea HOM05D005067 ORTHO05D006105 2.0e-36 155.6 93 77.4
A02p37170 Brassica napus HOM05D005067 ORTHO05D006105 2.0e-36 155.6 100 75.0
BraA02t08703Z Brassica rapa HOM05D005067 ORTHO05D006105 2.0e-36 155.6 100 75.0
Sed0000673 Sechium edule HOM05D005067 ORTHO05D006105 2.0e-36 155.6 95 76.8
AL8G19880 Arabidopsis lyrata HOM05D005067 ORTHO05D006105 2.6e-36 155.2 100 73.0
MSTRG.18590 Avicennia marina HOM05D005067 ORTHO05D006105 2.6e-36 155.2 95 75.8
arahy.Tifrunner.gnm1.ann1.S7KJ0A Arachis hypogaea HOM05D005067 ORTHO05D006105 3.4e-36 154.8 93 77.4
arahy.Tifrunner.gnm1.ann1.V7S8AY Arachis hypogaea HOM05D005067 ORTHO05D006105 3.4e-36 154.8 93 77.4
TPR.G17128 Trifolium pratense HOM05D005067 ORTHO05D006105 3.4e-36 154.8 95 73.7
arahy.Tifrunner.gnm1.ann1.75T26B Arachis hypogaea HOM05D005067 ORTHO05D006105 5.8e-36 154.1 93 76.3
arahy.Tifrunner.gnm1.ann1.MX8VGA Arachis hypogaea HOM05D005067 ORTHO05D006105 5.8e-36 154.1 93 76.3
Carub.0014s0003 Capsella rubella HOM05D005067 ORTHO05D006105 5.8e-36 154.1 94 73.4
FAN21G3427 Fragaria x ananassa HOM05D002614 ORTHO05D002794 7.6e-36 153.7 93 76.3
FAN25G2289 Fragaria x ananassa HOM05D005067 ORTHO05D006105 7.6e-36 153.7 93 76.3
arahy.Tifrunner.gnm1.ann1.WU9C10 Arachis hypogaea HOM05D005067 ORTHO05D006105 1.3e-35 152.9 93 76.3
FvH4_3g23621 Fragaria vesca HOM05D005067 ORTHO05D006105 1.7e-35 152.5 93 76.3
FAN11G0656 Fragaria x ananassa HOM05D001534 ORTHO05D003503 1.7e-35 152.5 93 76.3
FAN16G3498 Fragaria x ananassa HOM05D005067 ORTHO05D006105 1.7e-35 152.5 93 76.3
CARHR184460 Cardamine hirsuta HOM05D005067 ORTHO05D006105 2.9e-35 151.8 100 73.0
HanXRQChr08g0228171 Helianthus annuus HOM05D005067 ORTHO05D006105 3.8e-35 151.4 95 72.6
TWI18G1269 Tripterygium wilfordii HOM05D005067 ORTHO05D006105 3.8e-35 151.4 95 72.6
Sabra01G0050500 Salix brachista HOM05D005067 ORTHO05D006105 4.9e-35 151.0 116 65.5
Atru.chr12.1484 Acer truncatum HOM05D005067 ORTHO05D006105 6.4e-35 150.6 94 74.5
ATR0582G276 Amborella trichopoda HOM05D005067 ORTHO05D006105 6.4e-35 150.6 94 74.5
BcaB04g19540 Brassica carinata HOM05D005067 ORTHO05D006105 6.4e-35 150.6 100 71.0
Nitab4.5_0009655g0030 Nicotiana tabacum HOM05D005067 ORTHO05D006105 6.4e-35 150.6 95 74.7
arahy.Tifrunner.gnm1.ann1.48UY8P Arachis hypogaea HOM05D005067 ORTHO05D006105 8.4e-35 150.2 93 74.2
EL10Ac1g00908 Beta vulgaris HOM05D005067 ORTHO05D006105 8.4e-35 150.2 98 75.5
arahy.Tifrunner.gnm1.ann1.4NI9N6 Arachis hypogaea HOM05D005067 ORTHO05D006105 4.2e-34 147.9 93 74.2
Aqoxy5G02883 Aquilegia oxysepala HOM05D005067 ORTHO05D006105 5.4e-34 147.5 95 72.6
Peaxi162Scf00679g00133 Petunia axillaris HOM05D005067 ORTHO05D006105 5.4e-34 147.5 95 72.6
Zm00001eb283340 Zea mays HOM05D005067 ORTHO05D006105 7.1e-34 147.1 93 74.2
TWI36G0882 Tripterygium wilfordii HOM05D005067 ORTHO05D006105 9.2e-34 146.7 100 68.0
Solyc06g075810.3 Solanum lycopersicum HOM05D005067 ORTHO05D006105 1.2e-33 146.4 95 72.6
Sopen06g032240 Solanum pennellii HOM05D005067 ORTHO05D006105 1.2e-33 146.4 95 72.6
PGSC0003DMG400030398 Solanum tuberosum HOM05D005067 ORTHO05D006105 1.2e-33 146.4 95 72.6
Cc01_g12390 Coffea canephora HOM05D005067 ORTHO05D006105 2.7e-33 145.2 95 71.6
Nitab4.5_0002882g0010 Nicotiana tabacum HOM05D005067 ORTHO05D006105 2.7e-33 145.2 95 71.6
arahy.Tifrunner.gnm1.ann1.XUTR46 Arachis hypogaea HOM05D005067 ORTHO05D006105 3.5e-33 144.8 93 74.2
Eucgr.B03411 Eucalyptus grandis HOM05D005067 ORTHO05D006105 6.0e-33 144.1 101 68.3
Nitab4.5_0001953g0110 Nicotiana tabacum HOM05D005067 ORTHO05D006105 7.8e-33 143.7 95 70.5
unitig_736.g22438 Utricularia gibba HOM05D005067 ORTHO05D006105 1.0e-32 143.3 97 70.1
HPP92_001280 Vanilla planifolia HOM05D005067 ORTHO05D006105 2.3e-32 142.1 93 72.0
Zm00001eb345800 Zea mays HOM05D005067 ORTHO05D006105 3.0e-32 141.7 93 71.0
PGSC0003DMG400015529 Solanum tuberosum HOM05D005067 ORTHO05D006105 3.9e-32 141.4 95 70.5
MBI11_g22246_MAGBIO Magnolia biondii HOM05D005067 ORTHO05D006105 8.7e-32 140.2 87 77.0
BolC2t11675H Brassica oleracea HOM05D005067 ORTHO05D006105 1.1e-31 139.8 136 55.9
CDE02G2760 Ceratophyllum demersum HOM05D005067 ORTHO05D006105 1.5e-31 139.4 93 68.8
ClCG10G013160 Citrullus lanatus HOM05D005067 ORTHO05D006105 3.3e-31 138.3 146 52.7
CDE02G0654 Ceratophyllum demersum HOM05D005067 ORTHO05D006105 2.8e-30 135.2 89 69.7
Mapoly0012s0093 Marchantia polymorpha HOM05D005067 ORTHO05D006105 1.4e-29 132.9 90 65.6
Gohir.A09G105300 Gossypium hirsutum HOM05D005067 ORTHO05D006105 7.6e-28 127.1 70 77.1
Actinidia14133 Actinidia chinensis HOM05D005067 ORTHO05D006105 4.9e-27 124.4 70 78.6
Glyma.06G272300 Glycine max HOM05D005067 ORTHO05D006105 6.4e-27 124.0 71 78.9
Pp3c20_8510 Physcomitrium patens HOM05D005067 ORTHO05D006105 6.4e-27 124.0 91 61.5
SalBow3G2136 Salvia bowleyana HOM05D005067 ORTHO05D006105 2.4e-26 122.1 94 67.0
QL03p047951 Quercus lobata HOM05D005067 ORTHO05D006105 9.3e-26 120.2 66 81.8
TAR718G0005 Trochodendron aralioides HOM05D005067 ORTHO05D006105 6.0e-25 117.5 67 82.1
Lalb_Chr07g0194241 Lupinus albus HOM05D005067 ORTHO05D006105 7.8e-25 117.1 64 81.2
Psat0s3432g0200 Pisum sativum HOM05D005067 ORTHO05D006105 1.0e-24 116.7 68 76.5
SMO119G0159 Selaginella moellendorffii HOM05D005067 ORTHO05D006105 3.0e-24 115.2 91 54.9
Sc03g0003970 Simmondsia chinensis HOM05D005067 ORTHO05D006105 3.0e-24 115.2 64 79.7
AagrBONN_evm.TU.Sc2ySwM_117.283 Anthoceros agrestis HOM05D005067 ORTHO05D006105 3.3e-23 111.7 82 59.8
arahy.Tifrunner.gnm1.ann1.P4C6EV Arachis hypogaea HOM05D005067 ORTHO05D006105 4.3e-23 111.3 68 73.5
arahy.Tifrunner.gnm1.ann1.AQUA2C Arachis hypogaea HOM05D005067 ORTHO05D006105 7.3e-23 110.5 65 76.9
arahy.Tifrunner.gnm1.ann1.8NA9N0 Arachis hypogaea HOM05D005067 ORTHO05D006105 1.6e-22 109.4 65 75.4
Glyma.02G198800 Glycine max HOM05D005067 ORTHO05D006105 2.1e-22 109.0 61 78.7
Os04g0310500 Oryza sativa ssp. japonica HOM05D005067 ORTHO05D006105 1.2e-20 103.2 64 71.9
SHI02599 Sapria himalayana HOM05D005067 ORTHO05D006105 1.5e-20 102.8 67 71.6
SEGI_29862 Sequoiadendron giganteum HOM05D005067 ORTHO05D006105 1.5e-20 102.8 64 67.2
DCAR_005307 Daucus carota HOM05D005067 ORTHO05D006105 1.3e-19 99.8 62 69.4
unitig_899.g14896 Utricularia gibba HOM05D005067 ORTHO05D006105 3.8e-19 98.2 67 65.7
Cre16.g679500 Chlamydomonas reinhardtii HOM05D005067 ORTHO05D006105 3.2e-18 95.1 99 44.4
Pp3c23_15790 Physcomitrium patens HOM05D005067 ORTHO05D006105 6.7e-16 87.4 61 60.7
PRCOL_00006750 Prasinoderma coloniale HOM05D005067 ORTHO05D006105 7.4e-15 84.0 90 44.4
Nitab4.5_0009487g0020 Nicotiana tabacum HOM05D005067 ORTHO05D006105 4.8e-14 81.3 95 50.5
MCO03G395 Micromonas commoda HOM05D005067 ORTHO05D006105 1.4e-10 69.7 83 41.0


User provided reference genes

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