Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 0.0e+00 1168.3 684 100.0
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 7.8e-132 475.3 705 43.1
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 4.0e-128 463.0 698 45.3
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 8.9e-128 461.8 705 46.7
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 9.8e-127 458.4 726 41.9
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 5.4e-125 452.6 708 47.2
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 9.2e-125 451.8 696 43.8
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 1.2e-124 451.4 712 48.3
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 3.5e-124 449.9 697 44.3
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 6.0e-124 449.1 702 47.3
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 3.9e-123 446.4 702 46.2
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 3.3e-122 443.4 696 44.1
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 3.6e-121 439.9 693 43.6
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 1.1e-120 438.3 729 42.5
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 1.4e-120 438.0 697 44.0
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 1.4e-117 427.9 696 42.0
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 4.1e-117 426.4 706 47.2
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 2.7e-116 423.7 703 41.5
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 4.6e-116 422.9 701 42.2
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 3.3e-114 416.8 695 41.4
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 1.3e-110 404.8 693 40.8
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 4.9e-110 402.9 697 40.6
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 1.4e-109 401.4 748 39.3
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 2.4e-109 400.6 721 40.1
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 3.2e-109 400.2 703 40.8
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 2.7e-108 397.1 681 41.9
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 4.6e-108 396.4 696 40.5
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 8.6e-107 392.1 757 38.4
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 1.9e-106 391.0 713 39.4
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 5.6e-106 389.4 551 43.7
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 2.8e-105 387.1 700 39.3
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 6.2e-105 386.0 730 39.5
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 8.1e-105 385.6 700 39.7
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 1.1e-104 385.2 626 42.3
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.5e-103 381.3 701 39.9
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 4.4e-103 379.8 701 41.8
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 4.9e-102 376.3 710 39.2
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 2.4e-101 374.0 707 39.2
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 1.9e-98 364.4 695 38.8
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 1.2e-95 355.1 727 40.0
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 2.9e-94 350.5 742 37.6
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 2.9e-94 350.5 693 37.8
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 1.1e-93 348.6 693 38.2
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 4.2e-93 346.7 742 36.5
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 5.4e-93 346.3 692 36.4
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 3.5e-92 343.6 737 37.6
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 3.5e-92 343.6 735 37.6
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.0e-91 342.0 725 35.6
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 1.5e-90 338.2 725 36.8
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 2.5e-90 337.4 690 36.5
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 4.3e-90 336.7 733 35.1
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 7.4e-90 335.9 741 35.5
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 2.1e-89 334.3 714 36.4
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 4.8e-89 333.2 728 36.5
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 8.1e-89 332.4 687 38.0
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 1.8e-88 331.3 685 38.0
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 9.0e-88 328.9 710 35.5
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 1.2e-87 328.6 694 37.3
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 1.5e-87 328.2 557 39.1
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 1.3e-86 325.1 720 36.8
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 1.1e-85 322.0 689 35.3
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 5.5e-85 319.7 820 32.0
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 9.3e-85 318.9 710 36.2
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 7.9e-84 315.8 727 33.3
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 1.0e-83 315.5 698 36.7
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 8.7e-83 312.4 686 37.9
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 2.5e-82 310.8 702 35.9
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 1.6e-81 308.1 782 34.1
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 2.1e-81 307.8 692 37.4
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 3.7e-81 307.0 701 35.8
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 3.7e-81 307.0 702 35.9
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 4.8e-81 306.6 775 31.9
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 2.4e-80 304.3 704 35.5
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 5.3e-80 303.1 710 35.2
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 3.4e-79 300.4 693 35.5
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 4.5e-79 300.1 760 34.3
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 7.6e-79 299.3 693 39.4
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 1.3e-78 298.5 184 87.0
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 2.2e-78 297.7 830 31.8
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 2.9e-78 297.4 772 33.8
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 4.9e-78 296.6 687 35.1
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 1.9e-77 294.7 702 35.0
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.2e-76 292.0 774 32.9
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 2.7e-76 290.8 839 32.3
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 1.8e-75 288.1 717 35.3
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 1.1e-74 285.4 721 33.4
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 7.4e-74 282.7 713 32.7
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 7.4e-74 282.7 685 34.9
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 6.9e-72 276.2 737 31.9
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.9e-72 276.2 678 36.1
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 9.0e-72 275.8 867 33.3
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 1.5e-71 275.0 715 32.0
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 2.6e-71 274.2 871 32.7
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 5.9e-71 273.1 579 39.9
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 5.9e-71 273.1 706 33.6
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 1.0e-70 272.3 708 36.4
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 1.9e-69 268.1 762 35.0
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 5.7e-66 256.5 749 32.6
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 9.7e-66 255.8 583 36.0
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 6.3e-65 253.1 655 32.5
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 4.1e-64 250.4 694 32.7
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 1.9e-61 241.5 785 29.9
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 4.2e-61 240.4 709 32.7
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 5.5e-61 240.0 558 37.5
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 7.2e-61 239.6 575 34.3
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 6.1e-60 236.5 663 31.2
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 6.1e-60 236.5 891 29.6
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 7.9e-60 236.1 690 31.4
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 2.3e-59 234.6 565 34.7
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 2.3e-59 234.6 845 31.5
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 1.3e-57 228.8 678 32.2
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 1.7e-57 228.4 930 28.5
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 5.3e-56 223.4 660 32.0
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 5.3e-56 223.4 657 31.7
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 3.4e-55 220.7 655 32.1
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 7.7e-55 219.5 581 32.7
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 5.7e-50 203.4 720 28.6
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 1.3e-49 202.2 723 29.7
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 1.1e-48 199.1 739 29.1
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.5e-45 188.7 174 58.0
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.8e-40 171.8 363 36.1
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 1.0e-38 166.0 670 26.6
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 2.2e-38 164.9 577 30.8
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.9e-37 161.8 868 25.2
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 5.7e-34 150.2 235 40.4
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 7.5e-34 149.8 478 29.1
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 7.5e-34 149.8 263 38.8
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 9.8e-34 149.4 699 27.0
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 1.7e-33 148.7 464 32.1
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 4.8e-33 147.1 175 49.1
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 9.1e-32 142.9 374 34.0
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 1.6e-31 142.1 314 36.0
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 4.5e-31 140.6 454 33.3
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 5.9e-31 140.2 158 48.1
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 2.3e-30 138.3 314 34.7
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 1.6e-28 132.1 686 26.4
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 2.1e-28 131.7 215 42.8
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 4.0e-27 127.5 680 25.1
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.5e-26 125.6 713 25.1
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 2.0e-26 125.2 336 34.5
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 4.9e-25 120.6 322 40.1
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.0e-22 112.8 164 43.3
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 6.6e-22 110.2 386 28.5
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 6.1e-20 103.6 152 39.5
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 6.8e-19 100.1 78 64.1
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 1.2e-18 99.4 361 31.0
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 3.4e-18 97.8 360 30.8
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 9.8e-18 96.3 368 28.8
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 1.3e-17 95.9 83 50.6
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 6.4e-17 93.6 645 25.1
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 1.4e-16 92.4 369 30.4
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 3.2e-16 91.3 77 54.5
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 7.0e-16 90.1 194 37.1
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.0e-15 88.6 132 36.4
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.7e-15 88.2 133 38.3
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 3.5e-15 87.8 627 22.3
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 5.9e-15 87.0 60 60.0
Hma1.2p1_0900F.1_g234620 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 2.3e-14 85.1 114 45.6
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.3e-14 85.1 140 37.1
Lj3P1060T39 Lonicera japonica HOM05D004112 ORTHO05D004739 5.0e-14 84.0 97 49.5
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.9e-13 82.0 563 25.2
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 1.6e-12 79.0 89 41.6
CANSAT56G4040 Cannabis sativa HOM05D004112 ORTHO05D004739 4.7e-12 77.4 183 38.8
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 1.8e-11 75.5 83 41.0
BcaC05g25060 Brassica carinata HOM05D021208 ORTHO05D027101 7.0e-08 63.5 80 38.8
SHI17828 Sapria himalayana HOM05D004112 ORTHO05D004739 3.5e-07 61.2 85 41.2
Lj3A62T27 Lonicera japonica HOM05D004112 ORTHO05D004739 3.0e-06 58.2 103 39.8


User provided reference genes

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