Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 8.2e-274 946.4 470 100.0
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 6.3e-258 893.6 462 95.2
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 1.9e-214 749.2 451 80.0
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 6.2e-213 744.2 466 79.2
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 8.9e-212 740.3 464 78.0
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 7.5e-211 737.3 453 77.3
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 7.5e-211 737.3 451 78.5
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 1.7e-210 736.1 459 79.3
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 2.2e-210 735.7 451 79.8
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 3.7e-210 734.9 464 77.4
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 3.7e-210 734.9 458 77.7
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 8.3e-210 733.8 451 77.8
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 8.3e-210 733.8 451 79.6
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 1.9e-209 732.6 453 79.2
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 5.4e-209 731.1 456 78.3
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 7.0e-209 730.7 455 77.1
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 9.2e-209 730.3 451 79.4
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 1.6e-208 729.6 451 79.2
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 2.1e-208 729.2 449 77.5
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 2.7e-208 728.8 452 79.4
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 3.5e-208 728.4 453 78.4
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 3.5e-208 728.4 453 78.4
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 6.0e-208 727.6 459 76.9
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 1.0e-207 726.9 451 77.4
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 1.7e-207 726.1 446 78.5
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.7e-207 726.1 453 78.1
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.7e-207 726.1 453 78.1
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 3.0e-207 725.3 472 76.5
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 3.0e-207 725.3 472 76.5
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 5.0e-207 724.5 446 78.0
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 6.6e-207 724.2 450 77.3
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 1.1e-206 723.4 453 78.1
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.5e-206 723.0 472 76.7
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 2.5e-206 722.2 449 77.1
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 3.3e-206 721.8 444 77.9
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 7.3e-206 720.7 446 77.6
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 2.1e-205 719.2 451 77.4
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 8.1e-205 717.2 448 77.0
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 8.1e-205 717.2 453 77.7
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 8.1e-205 717.2 448 77.5
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 1.4e-204 716.5 464 75.6
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 2.3e-204 715.7 441 79.4
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 4.0e-204 714.9 451 76.9
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 5.2e-204 714.5 469 74.6
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 6.8e-204 714.1 440 79.3
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 6.8e-204 714.1 451 76.3
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 1.5e-203 713.0 453 77.5
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 2.0e-203 712.6 451 76.3
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 3.4e-203 711.8 451 76.5
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 4.4e-203 711.4 451 76.3
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 4.4e-203 711.4 486 72.8
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 5.8e-203 711.1 451 76.3
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 2.9e-202 708.8 444 76.8
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 6.4e-202 707.6 453 75.3
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 6.4e-202 707.6 438 78.3
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 3.2e-201 705.3 468 74.6
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 9.2e-201 703.7 453 75.7
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 9.2e-201 703.7 449 77.3
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 1.6e-200 703.0 444 75.7
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 2.1e-200 702.6 454 75.8
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 2.7e-200 702.2 451 75.2
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 4.6e-200 701.4 449 76.2
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 6.0e-200 701.0 451 75.2
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 1.0e-199 700.3 468 71.8
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 1.7e-199 699.5 448 75.2
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 3.0e-199 698.7 451 74.7
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 3.0e-199 698.7 453 75.3
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 3.0e-199 698.7 451 74.5
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 3.9e-199 698.4 440 75.7
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 6.6e-199 697.6 471 73.0
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 6.6e-199 697.6 447 76.7
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 3.3e-198 695.3 443 75.6
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 5.6e-198 694.5 468 70.9
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.2e-197 693.3 455 74.3
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 2.8e-197 692.2 447 72.0
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 4.7e-197 691.4 455 74.3
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 6.2e-197 691.0 457 73.5
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 8.1e-197 690.6 455 74.5
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 1.1e-196 690.3 450 73.3
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 3.1e-196 688.7 441 74.1
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 5.2e-196 688.0 457 72.0
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 1.2e-195 686.8 449 75.1
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 2.0e-195 686.0 459 72.8
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 3.4e-195 685.3 453 73.7
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 7.6e-195 684.1 469 72.7
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 7.6e-195 684.1 475 72.4
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 1.3e-194 683.3 454 73.1
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 1.7e-194 682.9 448 72.8
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 2.9e-194 682.2 462 73.2
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 2.9e-194 682.2 435 76.1
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 2.9e-194 682.2 425 76.0
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 3.8e-194 681.8 474 72.4
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 3.8e-194 681.8 430 76.0
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 4.9e-194 681.4 448 74.3
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 6.4e-194 681.0 430 76.7
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 1.4e-193 679.9 461 72.9
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 2.4e-193 679.1 444 73.4
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 2.4e-193 679.1 454 73.8
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 9.2e-193 677.2 441 73.2
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 9.2e-193 677.2 431 76.6
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 1.6e-192 676.4 468 72.0
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 2.7e-192 675.6 448 73.9
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 3.5e-192 675.2 458 72.7
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 4.6e-192 674.9 448 72.5
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 6.0e-192 674.5 435 73.8
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 6.0e-192 674.5 435 73.8
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 1.7e-191 672.9 473 70.4
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 6.6e-191 671.0 456 71.3
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 8.7e-191 670.6 430 73.7
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 1.1e-190 670.2 446 72.2
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 1.1e-190 670.2 453 72.6
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 2.5e-190 669.1 453 71.5
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 2.5e-190 669.1 412 77.4
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 4.3e-190 668.3 433 75.3
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 5.6e-190 667.9 448 72.1
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 5.6e-190 667.9 413 76.8
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 7.3e-190 667.5 456 70.8
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.6e-189 666.4 436 73.2
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 6.2e-189 664.5 440 71.4
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 1.1e-188 663.7 454 71.8
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 2.4e-188 662.5 453 71.5
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 4.4e-187 658.3 431 75.2
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 2.4e-185 652.5 445 72.1
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 3.2e-185 652.1 404 78.2
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 5.4e-185 651.4 447 72.3
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 9.3e-185 650.6 404 78.2
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 3.5e-184 648.7 459 69.5
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.0e-183 647.1 446 67.9
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 2.3e-183 646.0 449 69.9
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 2.3e-183 646.0 445 69.9
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 4.3e-182 641.7 393 77.1
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 5.6e-182 641.3 433 70.7
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 8.1e-181 637.5 450 68.4
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 1.2e-179 633.6 454 68.7
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.1e-177 627.1 441 68.9
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 6.0e-176 621.3 395 76.5
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 6.0e-176 621.3 368 79.6
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 8.7e-175 617.5 452 66.4
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 5.6e-174 614.8 388 76.3
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 2.1e-173 612.8 392 75.0
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 5.8e-171 604.7 445 66.7
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 4.9e-170 601.7 367 78.7
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 6.0e-160 568.2 392 71.4
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 5.5e-153 545.0 451 63.0
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 2.3e-151 539.7 427 62.3
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 6.9e-148 528.1 443 60.7
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 3.0e-143 512.7 445 60.0
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 2.2e-141 506.5 430 58.1
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 7.2e-137 491.5 467 56.1
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 3.3e-134 482.6 423 56.5
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 1.6e-123 447.2 327 66.1
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 2.3e-119 433.3 291 72.5
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 9.8e-118 427.9 437 51.9
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 3.1e-108 396.4 237 78.1
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 3.3e-105 386.3 276 67.4
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 4.7e-104 382.5 440 45.2
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 2.9e-101 373.2 232 76.3
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 1.7e-98 364.0 425 47.1
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 7.5e-94 348.6 382 47.9
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 3.0e-74 283.5 280 56.1
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 4.2e-68 263.1 145 84.8
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 2.8e-56 223.8 157 71.3
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 4.2e-44 183.3 113 75.2
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.5e-41 174.9 130 65.4
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 5.7e-41 172.9 459 29.8
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 8.5e-37 159.1 93 78.5
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 1.1e-31 142.1 453 28.7
VMungo1383G1334 Vigna mungo HOM05D004143 ORTHO05D432805 2.6e-25 120.9 84 66.7
GSVIVG01027551001 Vitis vinifera HOM05D000016 ORTHO05D000109 7.7e-22 109.4 75 68.0
TPR.G22104 Trifolium pratense HOM05D004143 ORTHO05D004816 2.8e-16 90.9 59 71.2
unitig_578.g16680 Utricularia gibba HOM05D004143 ORTHO05D004816 1.0e-13 82.4 79 53.2
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 2.8e-08 64.3 179 25.1
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 8.3e-08 62.8 43 65.1
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 1.8e-07 61.6 43 62.8
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 9.1e-07 59.3 230 25.2
SMO197G0098 Selaginella moellendorffii HOM05D001886 ORTHO05D005666 2.0e-06 58.2 269 21.2


User provided reference genes

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