Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G3073 Cannabis sativa HOM05D005772 ORTHO05D006468 1.6e-103 379.8 245 100.0
Cfa003428 Carpinus fangiana HOM05D005772 ORTHO05D006468 1.2e-61 240.7 245 66.5
TWI18G0423 Tripterygium wilfordii HOM05D005772 ORTHO05D006468 3.1e-59 232.6 245 56.3
Potri.007G001400 Populus trichocarpa HOM05D005772 ORTHO05D006468 3.2e-56 222.6 249 52.6
Sabra07G0001200 Salix brachista HOM05D005772 ORTHO05D006468 1.6e-55 220.3 243 53.1
QL06p046996 Quercus lobata HOM05D005772 ORTHO05D006468 1.0e-54 217.6 244 56.1
CiPaw.02G128300 Carya illinoinensis HOM05D005772 ORTHO05D006468 2.3e-54 216.5 245 54.3
CiPaw.01G207400 Carya illinoinensis HOM05D005772 ORTHO05D006468 3.0e-54 216.1 245 56.7
MD04G1024200 Malus domestica HOM05D005772 ORTHO05D006468 6.8e-54 214.9 245 54.7
Prupe.3G025100 Prunus persica HOM05D005772 ORTHO05D006468 7.5e-53 211.5 245 54.7
Ciclev10013938m.g Citrus clementina HOM05D005772 ORTHO05D006468 4.9e-52 208.8 245 50.2
Ciclev10013939m.g Citrus clementina HOM05D005772 ORTHO05D006468 4.9e-52 208.8 245 50.2
FAN02G1413 Fragaria x ananassa HOM05D005772 ORTHO05D006468 5.4e-51 205.3 245 50.6
FAN09G4514 Fragaria x ananassa HOM05D005772 ORTHO05D006468 1.2e-50 204.1 245 51.0
FAN14G5951 Fragaria x ananassa HOM05D005772 ORTHO05D006468 2.0e-50 203.4 245 50.2
Ciclev10013941m.g Citrus clementina HOM05D005772 ORTHO05D006468 2.9e-49 199.5 245 49.4
GSVIVG01029533001 Vitis vinifera HOM05D005956 ORTHO05D007197 3.8e-49 199.1 243 59.7
RcHm_v2.0_Chr2g0149081 Rosa chinensis HOM05D005772 ORTHO05D006468 1.5e-48 197.2 245 51.0
Potri.007G001650 Populus trichocarpa HOM05D005772 ORTHO05D006468 5.6e-48 195.3 119 73.9
PGR031G3661 Punica granatum HOM05D005772 ORTHO05D006468 1.6e-47 193.7 246 46.3
CSS0023973 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 4.7e-47 192.2 253 45.8
Thecc.06G054300 Theobroma cacao HOM05D005772 ORTHO05D006468 5.2e-46 188.7 243 58.0
Lj3g0026748 Lotus japonicus HOM05D005772 ORTHO05D006468 6.8e-46 188.3 245 47.8
MBI06_g27497_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 2.2e-44 183.3 154 57.8
PSO170G5960 Papaver somniferum HOM05D005772 ORTHO05D006468 2.9e-44 183.0 245 45.7
Aqoxy2G03016 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 3.7e-44 182.6 156 57.1
TAR625G1307 Trochodendron aralioides HOM05D005772 ORTHO05D006468 1.1e-43 181.0 242 49.2
Nn8g41076 Nelumbo nucifera HOM05D005772 ORTHO05D006468 1.4e-43 180.6 244 45.5
PSO063G1689 Papaver somniferum HOM05D005772 ORTHO05D006468 3.5e-42 176.0 146 59.6
Oeu038376.1 Olea europaea HOM05D005772 ORTHO05D006468 1.7e-41 173.7 151 56.3
vmacro10401 Vaccinium macrocarpon HOM05D005772 ORTHO05D006468 2.3e-41 173.3 248 44.0
Rhsim08G0251400 Rhododendron simsii HOM05D000927 ORTHO05D000850 5.0e-41 172.2 150 59.3
CSS0004874 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 1.5e-40 170.6 254 46.9
HPP92_009982 Vanilla planifolia HOM05D005772 ORTHO05D006468 1.5e-40 170.6 156 54.5
Manes.14G007000 Manihot esculenta HOM05D005772 ORTHO05D006468 8.9e-38 161.4 242 42.1
Medtr0032s0080 Medicago truncatula HOM05D005772 ORTHO05D006468 1.3e-36 157.5 246 41.1
CARHR072530 Cardamine hirsuta HOM05D005772 ORTHO05D006468 3.0e-33 146.4 162 46.9
Carub.0002s2577 Capsella rubella HOM05D005772 ORTHO05D006468 3.3e-32 142.9 119 54.6
AT1G78922 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 6.8e-30 135.2 231 45.5
Aa31LG4G2060 Aethionema arabicum HOM05D005772 ORTHO05D006468 1.5e-29 134.0 239 37.2
BcaB02g07187 Brassica carinata HOM05D005772 ORTHO05D006468 2.6e-29 133.3 119 54.6
BcaC08g45402 Brassica carinata HOM05D007236 ORTHO05D009150 5.8e-29 132.1 119 53.8
BraA07t30382Z Brassica rapa HOM05D005772 ORTHO05D006468 1.7e-28 130.6 153 47.7
A07p27410 Brassica napus HOM05D005772 ORTHO05D006468 2.9e-28 129.8 153 47.1
SHI31127 Sapria himalayana HOM05D005772 ORTHO05D006468 3.7e-28 129.4 316 32.0
C06p30330 Brassica napus HOM05D005772 ORTHO05D006468 3.2e-27 126.3 230 42.2
BolC6t38196H Brassica oleracea HOM05D005772 ORTHO05D006468 3.2e-27 126.3 230 42.2
AL2G39360 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 1.2e-26 124.4 106 53.8
Haze_16205 Corylus avellana HOM05D005772 ORTHO05D006468 3.5e-26 122.9 197 49.2
TPR.G38724 Trifolium pratense HOM05D003324 ORTHO05D006468 6.0e-26 122.1 128 52.3
THA.LOC104813627 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 3.9e-25 119.4 278 37.8
FvH4_6g36610 Fragaria vesca HOM05D005772 ORTHO05D006468 4.3e-24 115.9 181 43.6
Sp5g33960 Schrenkiella parvula HOM05D005772 ORTHO05D006468 3.6e-23 112.8 153 45.1
Thecc.08G129200 Theobroma cacao HOM05D005772 ORTHO05D006468 5.2e-22 109.0 155 40.0
MBI06_g44579_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 1.5e-21 107.5 118 44.9
Duzib192G0394 Durio zibethinus HOM05D005772 ORTHO05D006468 2.6e-21 106.7 119 47.9
Gohir.D05G239100 Gossypium hirsutum HOM05D005772 ORTHO05D006468 5.8e-21 105.5 120 43.3
Gorai.009G247900 Gossypium raimondii HOM05D005772 ORTHO05D006468 5.8e-21 105.5 120 43.3
TAR628G1655 Trochodendron aralioides HOM05D005772 ORTHO05D006468 5.8e-21 105.5 154 39.0
Nn5g28367 Nelumbo nucifera HOM05D005772 ORTHO05D006468 9.9e-21 104.8 152 38.2
CiPaw.16G025800 Carya illinoinensis HOM05D005772 ORTHO05D006468 2.9e-20 103.2 157 37.6
Potri.005G180400 Populus trichocarpa HOM05D005772 ORTHO05D006468 2.9e-20 103.2 120 45.8
Zm00001eb215960 Zea mays HOM05D046982 ORTHO05D006468 4.9e-20 102.4 157 39.5
CANSAT64G1440 Cannabis sativa HOM05D005772 ORTHO05D006468 8.4e-20 101.7 118 42.4
Ciclev10003748m.g Citrus clementina HOM05D005772 ORTHO05D006468 8.4e-20 101.7 119 45.4
Gohir.A05G237000 Gossypium hirsutum HOM05D005772 ORTHO05D006468 8.4e-20 101.7 120 41.7
arahy.Tifrunner.gnm1.ann1.B1JKF4 Arachis hypogaea HOM05D005772 ORTHO05D006468 2.4e-19 100.1 118 44.9
QL09p033796 Quercus lobata HOM05D005772 ORTHO05D006468 3.2e-19 99.8 147 40.8
Duzib093G1216 Durio zibethinus HOM05D005772 ORTHO05D006468 5.4e-19 99.0 120 43.3
Phvul.007G102200 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 5.4e-19 99.0 118 42.4
VMungo1309G2764 Vigna mungo HOM05D005772 ORTHO05D006468 5.4e-19 99.0 119 43.7
Cpa.g.sc64.117 Carica papaya HOM05D005772 ORTHO05D006468 1.6e-18 97.4 157 36.9
Migut.C01111 Erythranthe guttata HOM05D005772 ORTHO05D006468 2.7e-18 96.7 148 39.2
Glyma.04G249200 Glycine max HOM05D005772 ORTHO05D006468 2.7e-18 96.7 154 40.3
Atru.chr1.2602 Acer truncatum HOM05D005772 ORTHO05D006468 6.0e-18 95.5 78 60.3
ClCG11G015880 Citrullus lanatus HOM05D005772 ORTHO05D006468 6.0e-18 95.5 162 35.8
Manes.02G166200 Manihot esculenta HOM05D005772 ORTHO05D006468 6.0e-18 95.5 108 41.7
Phvul.009G125600 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 7.8e-18 95.1 122 38.5
Glyma.06G113802 Glycine max HOM05D005772 ORTHO05D006468 1.0e-17 94.7 116 40.5
Psat5g087080 Pisum sativum HOM05D005772 ORTHO05D006468 1.0e-17 94.7 118 41.5
TPR.G21059 Trifolium pratense HOM05D005772 ORTHO05D006468 1.3e-17 94.4 122 41.8
arahy.Tifrunner.gnm1.ann1.AWF3QX Arachis hypogaea HOM05D005772 ORTHO05D006468 2.3e-17 93.6 120 40.8
Lj1g0001548 Lotus japonicus HOM05D005772 ORTHO05D006468 3.0e-17 93.2 118 42.4
Actinidia15231 Actinidia chinensis HOM05D005772 ORTHO05D006468 3.9e-17 92.8 161 36.6
Migut.E01717 Erythranthe guttata HOM05D005772 ORTHO05D006468 5.1e-17 92.4 147 37.4
GSVIVG01008837001 Vitis vinifera HOM05D005772 ORTHO05D006468 6.6e-17 92.0 158 38.0
CARHR022100 Cardamine hirsuta HOM05D005772 ORTHO05D006468 1.1e-16 91.3 118 37.3
Cc10_g12210 Coffea canephora HOM05D005772 ORTHO05D006468 1.9e-16 90.5 114 41.2
Eucgr.A00749 Eucalyptus grandis HOM05D005772 ORTHO05D006468 3.3e-16 89.7 181 40.9
MELO3C010502.2 Cucumis melo HOM05D005772 ORTHO05D006468 4.3e-16 89.4 118 39.8
CsaV3_4G028090 Cucumis sativus L. HOM05D005772 ORTHO05D006468 4.3e-16 89.4 152 34.9
DCAR_003562 Daucus carota HOM05D005772 ORTHO05D006468 4.3e-16 89.4 120 39.2
THA.LOC104800210 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 7.3e-16 88.6 115 38.3
AL1G34900 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 9.6e-16 88.2 118 35.6
Nitab4.5_0000111g0180 Nicotiana tabacum HOM05D005772 ORTHO05D006468 1.2e-15 87.8 114 42.1
Lalb_Chr08g0241421 Lupinus albus HOM05D005772 ORTHO05D006468 1.6e-15 87.4 93 45.2
SGA_v2.0_scaffold52G18944 Striga asiatica HOM05D005772 ORTHO05D006468 1.6e-15 87.4 120 37.5
Migut.E00857 Erythranthe guttata HOM05D005772 ORTHO05D006468 2.1e-15 87.0 150 36.0
Hma1.2p1_0612F.1_g188830 Hydrangea macrophylla HOM05D005772 ORTHO05D006468 3.6e-15 86.3 120 40.0
Carub.0001s2117 Capsella rubella HOM05D005772 ORTHO05D006468 1.4e-14 84.3 119 31.9
BcaC05g26092 Brassica carinata HOM05D005772 ORTHO05D006468 2.4e-14 83.6 150 35.3
Actinidia21305 Actinidia chinensis HOM05D005772 ORTHO05D006468 3.1e-14 83.2 134 40.3
FvH4_4g20570 Fragaria vesca HOM05D005956 ORTHO05D006468 4.0e-14 82.8 155 39.4
Aqoxy6G00258 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 6.9e-14 82.0 91 45.1
AT1G21722 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 1.2e-13 81.3 118 33.9
A06p17810 Brassica napus HOM05D005772 ORTHO05D006468 1.5e-13 80.9 103 36.9
Thhalv10008678m.g Eutrema salsugineum HOM05D005772 ORTHO05D006468 1.5e-13 80.9 118 33.1
PGR042G3290 Punica granatum HOM05D005772 ORTHO05D006468 5.8e-13 79.0 157 31.8
Lj4A634T17 Lonicera japonica HOM05D005772 ORTHO05D006468 7.6e-13 78.6 129 37.2
Dinv27285 Davidia involucrata HOM05D005772 ORTHO05D006468 1.3e-12 77.8 82 40.2
Aa31LG7G5690 Aethionema arabicum HOM05D002121 ORTHO05D004000 8.4e-12 75.1 102 39.2
CSS0028957 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 1.4e-11 74.3 119 36.1
Nitab4.5_0004208g0030 Nicotiana tabacum HOM05D005772 ORTHO05D006468 3.2e-11 73.2 82 41.5
A07p14940 Brassica napus HOM05D005772 ORTHO05D006468 7.1e-11 72.0 103 34.0
C05p20700 Brassica napus HOM05D005772 ORTHO05D006468 9.3e-11 71.6 95 35.8
SGA_v2.0_scaffold52G18951 Striga asiatica HOM05D005772 ORTHO05D006468 1.2e-10 71.2 90 41.1
Oeu009481.1 Olea europaea HOM05D005772 ORTHO05D006468 3.5e-10 69.7 82 39.0
MSTRG.1426 Avicennia marina HOM05D005772 ORTHO05D006468 6.0e-10 68.9 118 33.1
BcaB07g32170 Brassica carinata HOM05D005772 ORTHO05D006468 1.7e-09 67.4 84 36.9
QL06p047014 Quercus lobata HOM05D001071 ORTHO05D006468 5.1e-09 65.9 145 40.7
MD04G1024400 Malus domestica HOM05D005772 ORTHO05D006468 2.5e-08 63.5 67 50.7
Atru.chr13.1514 Acer truncatum HOM05D005772 ORTHO05D006468 9.6e-08 61.6 61 55.7
SGA_v2.0_scaffold24G10436 Striga asiatica HOM05D002121 ORTHO05D004000 9.6e-08 61.6 127 33.1
Solyc11g017475.1 Solanum lycopersicum HOM05D005772 ORTHO05D006468 6.2e-07 58.9 121 31.4
SalBow5G3743 Salvia bowleyana HOM05D005772 ORTHO05D006468 5.3e-06 55.8 68 36.8
SalBow5G0344 Salvia bowleyana HOM05D005772 ORTHO05D006468 6.9e-06 55.5 65 36.9


User provided reference genes

Program Settings