Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 8.8e-164 580.5 352 100.0
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 8.8e-164 580.5 352 100.0
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 1.4e-97 360.5 353 62.6
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 4.6e-96 355.5 348 64.7
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 4.6e-96 355.5 348 64.7
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 1.0e-95 354.4 353 58.6
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 5.1e-95 352.1 349 59.0
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 5.1e-95 352.1 353 64.6
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 8.7e-95 351.3 349 60.2
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 1.1e-94 350.9 360 61.4
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 5.6e-94 348.6 355 62.0
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 7.4e-94 348.2 349 64.2
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 2.4e-92 343.2 353 58.4
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 3.1e-92 342.8 354 57.1
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 9.0e-92 341.3 353 57.2
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 2.0e-91 340.1 352 58.2
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 2.6e-91 339.7 349 57.6
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 4.5e-91 339.0 352 60.5
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 7.6e-91 338.2 352 60.5
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 2.2e-90 336.7 355 61.1
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 2.9e-90 336.3 351 62.1
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 3.8e-90 335.9 352 62.5
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 6.5e-90 335.1 352 61.1
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 6.5e-90 335.1 352 61.1
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 3.2e-89 332.8 351 60.1
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 2.1e-88 330.1 352 60.2
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 2.1e-88 330.1 354 55.4
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 2.7e-88 329.7 353 56.4
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 2.7e-88 329.7 353 56.4
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 6.0e-88 328.6 354 55.6
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 7.9e-88 328.2 352 57.7
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 1.0e-87 327.8 353 64.6
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 1.8e-87 327.0 352 57.1
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 3.0e-87 326.2 353 58.9
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 3.9e-87 325.9 354 54.2
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 3.9e-87 325.9 352 57.1
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 3.9e-87 325.9 353 65.4
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 1.5e-86 323.9 350 62.0
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 2.5e-86 323.2 351 59.5
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 1.3e-85 320.9 365 57.0
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 2.1e-85 320.1 350 54.3
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 2.8e-85 319.7 352 54.3
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 2.8e-85 319.7 348 53.4
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 2.4e-84 316.6 351 59.0
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 3.1e-84 316.2 343 59.2
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 3.1e-84 316.2 352 56.0
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.2e-83 314.3 352 56.0
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 1.5e-83 313.9 352 62.2
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 1.7e-82 310.5 337 55.8
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 6.5e-82 308.5 361 53.5
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 1.1e-81 307.8 354 56.8
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 5.5e-81 305.4 327 59.0
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 5.5e-81 305.4 340 56.8
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 7.2e-81 305.1 345 59.1
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 2.3e-79 300.1 364 56.6
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 1.1e-78 297.7 356 52.8
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 1.5e-78 297.4 356 52.5
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 1.5e-78 297.4 356 52.5
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 4.3e-78 295.8 356 53.4
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 1.6e-77 293.9 352 52.3
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 4.8e-77 292.4 354 52.0
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 8.2e-77 291.6 348 54.0
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 1.4e-76 290.8 356 51.4
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 4.1e-76 289.3 361 50.1
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 2.6e-75 286.6 354 52.8
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 5.9e-75 285.4 354 54.0
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 2.2e-74 283.5 354 51.4
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 2.2e-74 283.5 354 51.4
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 8.5e-74 281.6 358 51.1
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 2.5e-73 280.0 351 53.8
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 4.2e-73 279.3 377 49.6
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 9.4e-73 278.1 356 48.3
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 1.2e-72 277.7 355 50.7
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 1.2e-72 277.7 355 50.7
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 1.2e-72 277.7 343 52.2
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 2.7e-72 276.6 365 49.0
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 1.4e-71 274.2 369 49.6
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 3.0e-71 273.1 376 48.4
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 2.5e-70 270.0 346 57.5
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 2.2e-69 266.9 388 46.6
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 3.7e-69 266.2 350 49.1
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 5.3e-68 262.3 358 50.8
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 6.9e-68 261.9 337 53.1
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 9.1e-68 261.5 340 49.7
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 1.2e-67 261.2 374 50.3
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 1.5e-67 260.8 275 63.6
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 2.0e-67 260.4 307 53.7
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 2.5e-65 253.4 331 47.1
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 1.6e-64 250.8 342 47.4
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 1.4e-63 247.7 349 45.0
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 8.2e-61 238.4 373 47.2
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 1.3e-58 231.1 358 47.8
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 2.9e-58 229.9 351 47.3
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 3.8e-58 229.6 364 44.8
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 1.9e-57 227.3 352 46.3
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 1.9e-57 227.3 351 45.6
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 6.1e-56 222.2 368 46.5
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 8.0e-56 221.9 375 42.4
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 3.0e-55 219.9 349 42.7
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 6.7e-55 218.8 354 46.3
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 2.6e-54 216.9 352 41.2
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 3.3e-54 216.5 338 42.0
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 1.7e-53 214.2 362 43.6
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 3.7e-53 213.0 348 45.4
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 6.3e-53 212.2 336 45.5
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 8.2e-53 211.8 354 42.4
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 1.1e-52 211.5 350 43.4
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 4.1e-52 209.5 304 43.4
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 4.1e-52 209.5 347 42.4
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 5.5e-49 199.1 342 43.3
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 7.2e-49 198.7 338 43.8
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 7.2e-49 198.7 338 43.8
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 1.2e-48 198.0 368 42.4
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 2.6e-46 190.3 347 47.3
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 5.7e-46 189.1 365 40.0
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 3.7e-45 186.4 350 38.9
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 2.4e-44 183.7 306 40.8
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 2.7e-43 180.3 314 46.8
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 1.3e-42 177.9 230 51.3
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 1.2e-40 171.4 271 48.7
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 8.0e-40 168.7 341 41.6
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 1.4e-39 167.9 376 41.5
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 2.3e-39 167.2 360 43.1
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 1.2e-38 164.9 288 39.9
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 5.7e-38 162.5 350 38.6
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 1.6e-35 154.5 351 39.0
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 3.5e-35 153.3 278 43.2
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 2.3e-31 140.6 293 35.5
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 2.6e-30 137.1 304 34.2
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 1.6e-27 127.9 191 46.1
arahy.Tifrunner.gnm1.ann1.EFW0VL Arachis hypogaea HOM05D004638 ORTHO05D005443 5.9e-27 125.9 174 48.3
Manes.12G121700 Manihot esculenta HOM05D004638 ORTHO05D005443 7.8e-27 125.6 199 52.8
Lj3g0004611 Lotus japonicus HOM05D004638 ORTHO05D005443 1.1e-25 121.7 302 36.4
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 1.8e-23 114.4 129 52.7
AUR62039396 Chenopodium quinoa HOM05D004638 ORTHO05D005443 9.8e-22 108.6 105 62.9
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 1.3e-21 108.2 426 31.2
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 2.9e-21 107.1 252 41.7
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 3.7e-21 106.7 172 38.4
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 4.3e-17 93.2 159 39.0
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 2.0e-14 84.3 123 44.7
Sabra08G0132300 Salix brachista HOM05D004638 ORTHO05D005443 1.7e-13 81.3 100 48.0
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 2.2e-13 80.9 347 31.4
Actinidia16422 Actinidia chinensis HOM05D004638 ORTHO05D005443 4.9e-13 79.7 151 45.0
Lj3g0021975 Lotus japonicus HOM05D004638 ORTHO05D005443 6.0e-11 72.8 151 37.1
unitig_22.g5967 Utricularia gibba HOM05D004638 ORTHO05D005443 1.3e-10 71.6 89 41.6
RcHm_v2.0_Chr3g0493171 Rosa chinensis HOM05D004638 ORTHO05D005443 5.1e-10 69.7 63 57.1
RcHm_v2.0_Chr5g0061161 Rosa chinensis HOM05D004638 ORTHO05D005443 1.9e-09 67.8 62 54.8
Medtr2g079040 Medicago truncatula HOM05D004638 ORTHO05D005443 1.1e-07 62.0 44 70.5


User provided reference genes

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