Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G2911 Cannabis sativa HOM05D004921 ORTHO05D006008 0.0e+00 1113.2 648 100.0
QL06p050536 Quercus lobata HOM05D004921 ORTHO05D006008 1.2e-163 580.9 639 60.7
Prupe.6G178900 Prunus persica HOM05D004921 ORTHO05D006008 4.4e-161 572.4 654 56.0
RcHm_v2.0_Chr2g0115541 Rosa chinensis HOM05D004921 ORTHO05D006008 4.4e-161 572.4 650 56.8
TAR381G0204 Trochodendron aralioides HOM05D004921 ORTHO05D006008 5.8e-161 572.0 653 55.4
Gohir.A11G198900 Gossypium hirsutum HOM05D004921 ORTHO05D006008 1.5e-156 557.4 661 53.6
TAR381G1578 Trochodendron aralioides HOM05D004921 ORTHO05D006008 1.9e-156 557.0 659 54.3
Duzib147G0642 Durio zibethinus HOM05D004921 ORTHO05D006008 2.5e-156 556.6 656 54.7
Gorai.007G242500 Gossypium raimondii HOM05D004921 ORTHO05D006008 2.8e-155 553.1 694 51.9
Gohir.D11G225200 Gossypium hirsutum HOM05D004921 ORTHO05D006008 1.8e-154 550.4 694 51.7
MELO3C007782.2 Cucumis melo HOM05D004921 ORTHO05D006008 8.9e-154 548.1 672 53.4
MD01G1023900 Malus domestica HOM05D004921 ORTHO05D006008 2.6e-153 546.6 651 55.1
Thecc.01G107800 Theobroma cacao HOM05D004921 ORTHO05D006008 9.9e-153 544.7 688 52.9
PGR004G1500 Punica granatum HOM05D004921 ORTHO05D006008 8.4e-152 541.6 654 53.8
Atru.chr4.263 Acer truncatum HOM05D004921 ORTHO05D006008 1.9e-151 540.4 658 52.0
Lalb_Chr07g0184941 Lupinus albus HOM05D004921 ORTHO05D006008 1.9e-151 540.4 654 56.4
Lalb_Chr13g0296081 Lupinus albus HOM05D004921 ORTHO05D006008 4.6e-150 535.8 652 55.4
Ciclev10025222m.g Citrus clementina HOM05D004921 ORTHO05D006008 7.8e-150 535.0 652 54.0
Eucgr.I00377 Eucalyptus grandis HOM05D004921 ORTHO05D006008 1.0e-149 534.6 659 53.6
TWI53G0980 Tripterygium wilfordii HOM05D004921 ORTHO05D006008 3.0e-149 533.1 687 51.1
Haze_24997 Corylus avellana HOM05D004921 ORTHO05D006008 3.9e-149 532.7 671 54.4
Sed0006076 Sechium edule HOM05D004921 ORTHO05D006008 1.2e-147 527.7 694 50.7
Gohir.D12G094600 Gossypium hirsutum HOM05D004921 ORTHO05D006008 6.2e-147 525.4 656 52.1
Actinidia36610 Actinidia chinensis HOM05D004921 ORTHO05D006008 1.4e-146 524.2 662 51.7
COL.COLO4_11048 Corchorus olitorius HOM05D004921 ORTHO05D006008 1.4e-146 524.2 685 53.9
GSVIVG01022188001 Vitis vinifera HOM05D004921 ORTHO05D006008 2.4e-146 523.5 685 54.3
Gorai.008G103200 Gossypium raimondii HOM05D004921 ORTHO05D006008 4.0e-146 522.7 656 52.0
CsaV3_6G045720 Cucumis sativus L. HOM05D004921 ORTHO05D006008 6.9e-146 521.9 674 52.1
Glyma.05G181700 Glycine max HOM05D004921 ORTHO05D006008 9.0e-146 521.5 658 54.1
Duzib187G0704 Durio zibethinus HOM05D004921 ORTHO05D006008 2.2e-144 516.9 724 49.7
MSTRG.2547 Avicennia marina HOM05D004921 ORTHO05D006008 7.8e-142 508.4 664 52.3
THA.LOC104807708 Tarenaya hassleriana HOM05D004921 ORTHO05D006008 1.3e-141 507.7 665 48.7
TPR.G2186 Trifolium pratense HOM05D004921 ORTHO05D006008 1.7e-141 507.3 656 50.8
Psat7g053360 Pisum sativum HOM05D004921 ORTHO05D006008 5.1e-141 505.8 654 53.2
arahy.Tifrunner.gnm1.ann1.WRB6NJ Arachis hypogaea HOM05D004921 ORTHO05D006008 6.6e-141 505.4 673 52.6
Manes.12G138700 Manihot esculenta HOM05D004921 ORTHO05D006008 1.1e-140 504.6 697 49.1
Sopen04g024290 Solanum pennellii HOM05D004921 ORTHO05D006008 5.6e-140 502.3 656 50.6
Lj4g0017071 Lotus japonicus HOM05D004921 ORTHO05D006008 9.6e-140 501.5 715 50.6
VMungo0251G2130 Vigna mungo HOM05D004921 ORTHO05D006008 3.6e-139 499.6 655 54.7
Phvul.002G262700 Phaseolus vulgaris HOM05D004921 ORTHO05D006008 4.8e-139 499.2 658 53.2
CiPaw.03G138100 Carya illinoinensis HOM05D004921 ORTHO05D006008 4.0e-138 496.1 476 60.9
Carub.0007s0157 Capsella rubella HOM05D004921 ORTHO05D006008 2.0e-137 493.8 676 49.0
FAN19G2080 Fragaria x ananassa HOM05D004921 ORTHO05D006008 7.6e-137 491.9 660 54.5
Nitab4.5_0001095g0090 Nicotiana tabacum HOM05D004921 ORTHO05D006008 3.8e-136 489.6 675 50.1
Rhsim10G0156300 Rhododendron simsii HOM05D004921 ORTHO05D006008 1.9e-135 487.3 674 49.4
AL7G11890 Arabidopsis lyrata HOM05D004921 ORTHO05D006008 2.1e-134 483.8 682 51.0
HanXRQChr02g0041141 Helianthus annuus HOM05D004921 ORTHO05D006008 2.1e-134 483.8 660 50.3
FvH4_1g21670 Fragaria vesca HOM05D004921 ORTHO05D006008 2.7e-134 483.4 650 54.9
Sp7g36200 Schrenkiella parvula HOM05D004921 ORTHO05D006008 2.7e-134 483.4 691 47.5
ClCG01G019030 Citrullus lanatus HOM05D004921 ORTHO05D006008 4.6e-134 482.6 643 51.0
Thhalv10024641m.g Eutrema salsugineum HOM05D004921 ORTHO05D006008 4.6e-134 482.6 672 48.1
AT4G39690 Arabidopsis thaliana HOM05D004921 ORTHO05D006008 1.3e-133 481.1 672 49.0
Glyma.08G139400 Glycine max HOM05D004921 ORTHO05D006008 3.9e-133 479.6 655 49.0
Aqoxy6G00539 Aquilegia oxysepala HOM05D004921 ORTHO05D006008 8.7e-133 478.4 612 52.1
Medtr8g091480 Medicago truncatula HOM05D004921 ORTHO05D006008 4.3e-132 476.1 652 52.6
Nn5g28998 Nelumbo nucifera HOM05D004921 ORTHO05D006008 3.7e-131 473.0 660 48.5
FAN28G0310 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.8e-130 470.7 659 53.7
FAN26G3332 Fragaria x ananassa HOM05D004921 ORTHO05D006008 9.0e-130 468.4 662 53.5
arahy.Tifrunner.gnm1.ann1.P05418 Arachis hypogaea HOM05D004921 ORTHO05D006008 2.0e-129 467.2 639 51.2
Potri.005G080200 Populus trichocarpa HOM05D004921 ORTHO05D006008 2.6e-129 466.8 682 48.8
FAN26G3387 Fragaria x ananassa HOM05D004921 ORTHO05D006008 3.4e-129 466.5 587 57.1
FAN23G2445 Fragaria x ananassa HOM05D004921 ORTHO05D006008 7.6e-129 465.3 676 52.5
C03p78130 Brassica napus HOM05D004921 ORTHO05D006008 6.4e-128 462.2 657 48.1
Sc03g0002320 Simmondsia chinensis HOM05D004921 ORTHO05D006008 1.4e-127 461.1 675 50.4
CARHR247030 Cardamine hirsuta HOM05D004921 ORTHO05D006008 2.4e-127 460.3 672 47.2
Migut.H02393 Erythranthe guttata HOM05D004921 ORTHO05D006008 2.4e-127 460.3 678 46.2
BcaC01g00311 Brassica carinata HOM05D004921 ORTHO05D006008 7.1e-127 458.8 667 47.2
SGA_v2.0_scaffold51G18730 Striga asiatica HOM05D004921 ORTHO05D006008 1.2e-126 458.0 634 48.1
BolC3t20076H Brassica oleracea HOM05D004921 ORTHO05D006008 3.5e-126 456.4 668 48.2
AUR62003756 Chenopodium quinoa HOM05D004921 ORTHO05D006008 3.9e-125 453.0 633 49.4
Dinv21950 Davidia involucrata HOM05D004921 ORTHO05D006008 3.9e-125 453.0 338 75.7
Gohir.A12G091122 Gossypium hirsutum HOM05D004921 ORTHO05D006008 3.9e-125 453.0 684 47.1
Potri.007G087100 Populus trichocarpa HOM05D004921 ORTHO05D006008 4.3e-124 449.5 672 46.9
BcaB03g12266 Brassica carinata HOM05D004921 ORTHO05D006008 7.4e-124 448.7 670 46.6
AUR62002041 Chenopodium quinoa HOM05D004921 ORTHO05D006008 9.6e-124 448.4 658 48.8
Lj4A880G51 Lonicera japonica HOM05D004921 ORTHO05D006008 1.6e-123 447.6 655 50.7
Hma1.2p1_0070F.1_g037680 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 6.2e-123 445.7 340 75.3
ECA246G4277 Erigeron canadensis HOM05D004921 ORTHO05D006008 6.9e-122 442.2 654 50.9
Hund13647 Selenicereus undatus HOM05D004921 ORTHO05D006008 9.0e-122 441.8 678 48.7
A08p23440 Brassica napus HOM05D004921 ORTHO05D006008 5.8e-121 439.1 687 46.0
PSO133G0077 Papaver somniferum HOM05D004921 ORTHO05D006008 5.8e-121 439.1 665 46.6
EL10Ac6g15063 Beta vulgaris HOM05D004921 ORTHO05D006008 1.7e-120 437.6 670 45.7
PSO541G2636 Papaver somniferum HOM05D004921 ORTHO05D006008 3.8e-120 436.4 654 47.1
MSTRG.23325 Avicennia marina HOM05D004921 ORTHO05D006008 8.4e-120 435.3 401 62.1
BraA08t34298Z Brassica rapa HOM05D004921 ORTHO05D006008 2.5e-119 433.7 664 46.4
Aa31LG6G15580 Aethionema arabicum HOM05D004921 ORTHO05D006008 1.2e-118 431.4 675 45.5
MBI05_g00773_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 5.3e-114 416.0 658 48.2
Sabra05G0065800 Salix brachista HOM05D004921 ORTHO05D006008 9.0e-114 415.2 739 42.5
Ah.03g142660 Amaranthus hybridus HOM05D004921 ORTHO05D006008 1.5e-113 414.5 611 49.8
Lsat_1_v5_gn_5_40701 Lactuca sativa HOM05D004921 ORTHO05D006008 4.5e-113 412.9 626 46.5
Peaxi162Scf00204g00620 Petunia axillaris HOM05D004921 ORTHO05D006008 2.5e-111 407.1 627 45.3
MD15G1329400 Malus domestica HOM05D004921 ORTHO05D006008 1.2e-110 404.8 384 62.2
vmacro12934 Vaccinium macrocarpon HOM05D004921 ORTHO05D006008 1.9e-108 397.5 635 43.5
ATR0661G561 Amborella trichopoda HOM05D004921 ORTHO05D006008 7.7e-105 385.6 608 45.2
CDE04G0927 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 1.5e-100 371.3 445 54.4
CDE06G0766 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 4.5e-97 359.8 494 50.6
DCAR_001020 Daucus carota HOM05D004921 ORTHO05D006008 1.0e-96 358.6 635 47.6
Zm00001eb431730 Zea mays HOM05D004921 ORTHO05D006008 3.0e-93 347.1 659 40.8
HPP92_016473 Vanilla planifolia HOM05D004921 ORTHO05D006008 4.4e-92 343.2 412 51.9
HPP92_027138 Vanilla planifolia HOM05D004921 ORTHO05D006008 1.3e-91 341.7 361 56.0
Cc07_g15680 Coffea canephora HOM05D004921 ORTHO05D006008 3.3e-84 317.0 527 43.1
SEGI_07937 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 1.3e-80 305.1 652 35.9
unitig_0.g2479 Utricularia gibba HOM05D004921 ORTHO05D006008 4.1e-74 283.5 669 35.6
MBI05_g36740_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 1.3e-59 235.3 218 61.5
Sabra07G0072000 Salix brachista HOM05D004921 ORTHO05D006008 1.1e-53 215.7 374 42.8
Dinv16320 Davidia involucrata HOM05D004921 ORTHO05D006008 9.8e-52 209.1 126 82.5
BcaNung05547 Brassica carinata HOM05D004921 ORTHO05D006008 3.5e-49 200.7 225 54.7
Pp3c3_27510 Physcomitrium patens HOM05D004921 ORTHO05D006008 2.3e-48 198.0 313 39.3
AagrBONN_evm.TU.Sc2ySwM_344.1023 Anthoceros agrestis HOM05D004921 ORTHO05D006008 3.9e-48 197.2 535 31.8
A01p00580 Brassica napus HOM05D004921 ORTHO05D006008 1.9e-47 194.9 287 45.6
Nitab4.5_0000518g0040 Nicotiana tabacum HOM05D004921 ORTHO05D006008 1.2e-44 185.7 448 35.7
Nitab4.5_0000518g0050 Nicotiana tabacum HOM05D004921 ORTHO05D006008 1.2e-44 185.7 112 82.1
Cc07_g15670 Coffea canephora HOM05D004921 ORTHO05D006008 1.7e-43 181.8 118 76.3
BraA01t00066Z Brassica rapa HOM05D004921 ORTHO05D006008 2.9e-43 181.0 193 56.0
CAN.G727.1 Capsicum annuum HOM05D004921 ORTHO05D006008 3.7e-43 180.6 118 76.3
SEGI_00052 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 3.7e-43 180.6 543 31.9
Mapoly0001s0396 Marchantia polymorpha HOM05D004921 ORTHO05D006008 4.9e-43 180.3 571 34.0
Hma1.2p1_0070F.1_g037670 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 6.4e-43 179.9 427 40.5
SMO174G0199 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 2.4e-42 177.9 486 31.5
BolC1t00074H Brassica oleracea HOM05D004921 ORTHO05D006008 9.5e-39 166.0 111 77.5
C01p00710 Brassica napus HOM05D004921 ORTHO05D006008 2.4e-37 161.4 112 76.8
CBR_g51480 Chara braunii HOM05D004921 ORTHO05D006008 2.0e-36 158.3 533 28.3
Cpa.g.sc82.58 Carica papaya HOM05D004921 ORTHO05D006008 5.8e-36 156.8 113 70.8
Cpa.g.sc82.56 Carica papaya HOM05D004921 ORTHO05D006008 7.3e-31 139.8 89 80.9
Zm00001eb069160 Zea mays HOM05D004921 ORTHO05D006008 7.3e-31 139.8 472 33.9
CSS0005403 Camellia sinensis var. sinensis HOM05D004921 ORTHO05D006008 1.6e-30 138.7 333 38.1
BcaNung00891 Brassica carinata HOM05D004921 ORTHO05D006008 4.0e-29 134.0 90 75.6
Nn5g31279 Nelumbo nucifera HOM05D004921 ORTHO05D006008 1.2e-28 132.5 93 75.3
SEGI_21175 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 7.6e-28 129.8 110 55.5
SMO197G0017 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 4.9e-27 127.1 224 36.6
Cpa.g.sc82.54 Carica papaya HOM05D004921 ORTHO05D006008 1.2e-20 105.9 83 67.5
MCO12G391 Micromonas commoda HOM05D004921 ORTHO05D006008 2.6e-20 104.8 230 27.4
Os04g0636600 Oryza sativa ssp. japonica HOM05D004921 ORTHO05D006008 4.6e-17 94.0 408 31.1
Dinv32118 Davidia involucrata HOM05D004921 ORTHO05D006008 3.3e-15 87.8 141 45.4
Dinv40591 Davidia involucrata HOM05D004921 ORTHO05D006008 3.7e-14 84.3 140 44.3
Dinv21952 Davidia involucrata HOM05D004921 ORTHO05D006008 6.2e-14 83.6 147 42.2
Dinv04895 Davidia involucrata HOM05D004921 ORTHO05D006008 8.1e-14 83.2 141 41.8
COL.COLO4_35617 Corchorus olitorius HOM05D004921 ORTHO05D006008 1.2e-09 69.3 51 68.6
Cre08.g358950 Chlamydomonas reinhardtii HOM05D004921 ORTHO05D006008 1.3e-08 65.9 147 25.9
Dinv21951 Davidia involucrata HOM05D004921 ORTHO05D006008 1.1e-07 62.8 114 40.4
Actinidia16048 Actinidia chinensis HOM05D004921 ORTHO05D006008 3.3e-07 61.2 53 56.6
MBI14_g34262_MAGBIO Magnolia biondii HOM05D000221 ORTHO05D006008 3.3e-07 61.2 54 57.4
MBI14_g14180_MAGBIO Magnolia biondii HOM05D000221 ORTHO05D006008 1.6e-06 58.9 65 47.7


User provided reference genes

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