Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G2889 Cannabis sativa HOM05D006441 ORTHO05D008203 2.7e-58 228.4 112 100.0
CANSAT01G2205 Cannabis sativa HOM05D006441 ORTHO05D008203 2.3e-49 198.7 99 98.0
Duzib147G0493 Durio zibethinus HOM05D006441 ORTHO05D008203 3.9e-41 171.4 99 79.8
Thecc.01G077600 Theobroma cacao HOM05D006441 ORTHO05D008203 8.7e-41 170.2 99 80.8
Lalb_Chr14g0365131 Lupinus albus HOM05D006441 ORTHO05D008203 5.7e-40 167.5 99 80.8
MD02G1190600 Malus domestica HOM05D006441 ORTHO05D008203 1.3e-39 166.4 99 79.8
Atru.chr3.1073 Acer truncatum HOM05D006441 ORTHO05D008203 1.7e-39 166.0 99 75.8
Cfa006781 Carpinus fangiana HOM05D006441 ORTHO05D008203 1.7e-39 166.0 99 78.8
QL06p038630 Quercus lobata HOM05D006441 ORTHO05D008203 3.7e-39 164.9 99 78.8
Manes.12G118300 Manihot esculenta HOM05D006441 ORTHO05D008203 4.8e-39 164.5 99 77.8
CiPaw.07G037200 Carya illinoinensis HOM05D007830 ORTHO05D009947 6.3e-39 164.1 99 78.8
CiPaw.07G037300 Carya illinoinensis HOM05D006441 ORTHO05D008203 8.2e-39 163.7 99 77.8
Gohir.D11G211300 Gossypium hirsutum HOM05D006441 ORTHO05D008203 8.2e-39 163.7 99 78.8
Gorai.007G227000 Gossypium raimondii HOM05D006441 ORTHO05D008203 1.1e-38 163.3 99 78.8
Ciclev10025205m.g Citrus clementina HOM05D006441 ORTHO05D008203 1.4e-38 162.9 99 74.7
TPR.G19350 Trifolium pratense HOM05D006441 ORTHO05D008203 2.4e-38 162.2 99 75.8
Eucgr.H02336 Eucalyptus grandis HOM05D006441 ORTHO05D008203 3.1e-38 161.8 99 74.7
Gohir.A11G211600 Gossypium hirsutum HOM05D006441 ORTHO05D008203 4.1e-38 161.4 99 77.8
LjContig00049g0002658 Lotus japonicus HOM05D006441 ORTHO05D008203 4.1e-38 161.4 99 76.8
Ca_06220_v3 Cicer arietinum L. HOM05D006441 ORTHO05D008203 5.3e-38 161.0 99 74.7
Medtr5g089970 Medicago truncatula HOM05D006441 ORTHO05D008203 6.9e-38 160.6 99 74.7
PGR102G2456 Punica granatum HOM05D006441 ORTHO05D008203 1.2e-37 159.8 100 76.0
Psat2g019280 Pisum sativum HOM05D006441 ORTHO05D008203 4.5e-37 157.9 99 72.7
Carub.0005s1608 Capsella rubella HOM05D006441 ORTHO05D008203 5.9e-37 157.5 99 74.7
Potri.007G007700 Populus trichocarpa HOM05D006441 ORTHO05D008203 5.9e-37 157.5 99 73.7
THA.LOC104821215 Tarenaya hassleriana HOM05D006441 ORTHO05D008203 5.9e-37 157.5 97 75.3
Aa31LG4G18210 Aethionema arabicum HOM05D006441 ORTHO05D008203 1.0e-36 156.8 99 73.7
Thhalv10010236m.g Eutrema salsugineum HOM05D006441 ORTHO05D008203 1.3e-36 156.4 99 75.8
GSVIVG01002450001 Vitis vinifera HOM05D006441 ORTHO05D008203 1.7e-36 156.0 99 71.7
BcaB01g00678 Brassica carinata HOM05D006441 ORTHO05D008203 2.9e-36 155.2 99 73.7
BcaC07g39436 Brassica carinata HOM05D006441 ORTHO05D008203 2.9e-36 155.2 99 73.7
AL5G29680 Arabidopsis lyrata HOM05D006441 ORTHO05D008203 3.8e-36 154.8 99 73.7
AT3G49725 Arabidopsis thaliana HOM05D006441 ORTHO05D008203 8.5e-36 153.7 99 73.7
MELO3C024853.2 Cucumis melo HOM05D006441 ORTHO05D008203 3.2e-35 151.8 99 73.7
Sp5g12360 Schrenkiella parvula HOM05D006441 ORTHO05D008203 3.2e-35 151.8 99 72.7
THA.LOC104810646 Tarenaya hassleriana HOM05D006441 ORTHO05D008203 4.2e-35 151.4 91 76.9
CARHR158800 Cardamine hirsuta HOM05D006441 ORTHO05D008203 9.4e-35 150.2 99 72.7
CsaV3_4G008510 Cucumis sativus L. HOM05D006441 ORTHO05D008203 1.2e-34 149.8 99 73.7
Sed0000343 Sechium edule HOM05D006441 ORTHO05D008203 1.6e-34 149.4 99 73.7
CSS0036817 Camellia sinensis var. sinensis HOM05D006441 ORTHO05D008203 4.7e-34 147.9 99 70.7
Nitab4.5_0000776g0060 Nicotiana tabacum HOM05D006441 ORTHO05D008203 7.9e-34 147.1 99 68.7
Nitab4.5_0000142g0480 Nicotiana tabacum HOM05D006441 ORTHO05D008203 2.3e-33 145.6 99 68.7
Glyma.02G280500 Glycine max HOM05D006441 ORTHO05D008203 3.0e-33 145.2 100 71.0
Nn6g34544 Nelumbo nucifera HOM05D006441 ORTHO05D008203 1.5e-32 142.9 99 68.7
Sc16g0002790 Simmondsia chinensis HOM05D006441 ORTHO05D008203 2.0e-32 142.5 99 66.7
HanXRQChr12g0377011 Helianthus annuus HOM05D006441 ORTHO05D008203 2.6e-32 142.1 98 72.4
Migut.H00320 Erythranthe guttata HOM05D006441 ORTHO05D008203 3.3e-32 141.7 99 71.7
ATR0019G023 Amborella trichopoda HOM05D006441 ORTHO05D008203 4.4e-32 141.4 99 69.7
VMungo0647G1795 Vigna mungo HOM05D006441 ORTHO05D008203 5.7e-32 141.0 100 70.0
Phvul.008G200200 Phaseolus vulgaris HOM05D006441 ORTHO05D008203 9.7e-32 140.2 100 71.0
Sopen02g036590 Solanum pennellii HOM05D006441 ORTHO05D008203 1.3e-31 139.8 98 65.3
Actinidia36417 Actinidia chinensis HOM05D006441 ORTHO05D008203 2.8e-31 138.7 99 65.7
Rhsim10G0094400 Rhododendron simsii HOM05D006441 ORTHO05D008203 2.8e-31 138.7 118 61.0
PGSC0003DMG400021428 Solanum tuberosum HOM05D006441 ORTHO05D008203 2.8e-31 138.7 98 64.3
TWI53G1431 Tripterygium wilfordii HOM05D006441 ORTHO05D008203 3.7e-31 138.3 99 67.7
DCAR_010797 Daucus carota HOM05D006441 ORTHO05D008203 4.8e-31 137.9 99 69.7
CDE07G0466 Ceratophyllum demersum HOM05D006441 ORTHO05D008203 6.3e-31 137.5 99 68.7
Solyc02g092010.4 Solanum lycopersicum HOM05D006441 ORTHO05D008203 1.8e-30 136.0 98 63.3
Lsat_1_v5_gn_3_85860 Lactuca sativa HOM05D006441 ORTHO05D008203 2.4e-30 135.6 98 69.4
COL.COLO4_11626 Corchorus olitorius HOM05D006441 ORTHO05D008203 5.3e-30 134.4 78 79.5
HPP92_008937 Vanilla planifolia HOM05D006441 ORTHO05D008203 6.9e-30 134.0 98 64.3
Cc07_g07440 Coffea canephora HOM05D006441 ORTHO05D008203 1.2e-29 133.3 98 66.3
Aqoxy6G02956 Aquilegia oxysepala HOM05D006441 ORTHO05D008203 1.5e-29 132.9 98 65.3
EL10Ac6g15582 Beta vulgaris HOM05D006441 ORTHO05D008203 1.5e-29 132.9 110 60.0
SGA_v2.0_scaffold269G46276 Striga asiatica HOM05D006441 ORTHO05D008203 2.0e-29 132.5 99 65.7
Dinv23055 Davidia involucrata HOM05D006441 ORTHO05D008203 2.6e-29 132.1 99 64.6
BolC8t50089H Brassica oleracea HOM05D006441 ORTHO05D008203 3.4e-29 131.7 99 67.7
BraA06t24888Z Brassica rapa HOM05D006441 ORTHO05D008203 3.4e-29 131.7 99 67.7
Zm00001eb055970 Zea mays HOM05D006441 ORTHO05D008203 3.8e-28 128.3 99 62.6
MSTRG.23600 Avicennia marina HOM05D006441 ORTHO05D008203 6.5e-28 127.5 99 61.6
CAN.G1343.13 Capsicum annuum HOM05D006441 ORTHO05D008203 1.2e-26 123.2 110 53.6
BcaB08g36690 Brassica carinata HOM05D006441 ORTHO05D008203 2.1e-26 122.5 85 68.2
Haze_03978 Corylus avellana HOM05D006441 ORTHO05D008203 2.1e-26 122.5 110 59.1
ECA246G2498 Erigeron canadensis HOM05D006441 ORTHO05D008203 1.8e-25 119.4 99 62.6
Prupe.6G215400 Prunus persica HOM05D006441 ORTHO05D008203 1.8e-25 119.4 99 64.6
PSO675G4807 Papaver somniferum HOM05D006441 ORTHO05D008203 9.7e-24 113.6 100 58.0
Sabra07G0005900 Salix brachista HOM05D006441 ORTHO05D008203 1.3e-23 113.2 64 78.1
Os03g0727900 Oryza sativa ssp. japonica HOM05D006441 ORTHO05D008203 2.8e-23 112.1 99 56.6
PSO541G6514 Papaver somniferum HOM05D006441 ORTHO05D008203 3.7e-23 111.7 100 57.0
FAN23G0818 Fragaria x ananassa HOM05D006441 ORTHO05D008203 6.3e-23 110.9 85 64.7
FvH4_1g18350 Fragaria vesca HOM05D006441 ORTHO05D008203 1.1e-22 110.2 78 67.9
FAN19G0231 Fragaria x ananassa HOM05D006441 ORTHO05D008203 1.1e-22 110.2 78 67.9
Ah.03g140760 Amaranthus hybridus HOM05D006441 ORTHO05D008203 2.4e-22 109.0 99 54.5
A06p17970 Brassica napus HOM05D006441 ORTHO05D008203 2.4e-22 109.0 99 57.6
C08p24750 Brassica napus HOM05D006441 ORTHO05D008203 2.4e-22 109.0 99 57.6
SEGI_39991 Sequoiadendron giganteum HOM05D006441 ORTHO05D008203 5.3e-22 107.8 99 50.5
RcHm_v2.0_Chr2g0109051 Rosa chinensis HOM05D006441 ORTHO05D008203 2.0e-21 105.9 78 64.1
vmacro05378 Vaccinium macrocarpon HOM05D006441 ORTHO05D008203 1.7e-20 102.8 101 50.5
arahy.Tifrunner.gnm1.ann1.FY2PML Arachis hypogaea HOM05D006441 ORTHO05D008203 1.1e-19 100.1 61 77.0
arahy.Tifrunner.gnm1.ann1.H9DIKV Arachis hypogaea HOM05D006441 ORTHO05D008203 1.1e-19 100.1 61 77.0
FAN26G0165 Fragaria x ananassa HOM05D006441 ORTHO05D008203 1.5e-19 99.8 85 58.8
Hund16422 Selenicereus undatus HOM05D006441 ORTHO05D008203 3.2e-19 98.6 64 70.3
unitig_899.g14592 Utricularia gibba HOM05D006441 ORTHO05D008203 7.2e-19 97.4 78 60.3
AUR62007550 Chenopodium quinoa HOM05D006441 ORTHO05D008203 9.4e-19 97.1 99 53.5
TAR628G1609 Trochodendron aralioides HOM05D006441 ORTHO05D008203 2.3e-17 92.4 78 57.7
ClCG07G009760 Citrullus lanatus HOM05D006441 ORTHO05D008203 3.0e-17 92.0 50 84.0
Mapoly0061s0091 Marchantia polymorpha HOM05D006441 ORTHO05D008203 4.4e-16 88.2 106 48.1
SMO117G0055 Selaginella moellendorffii HOM05D006441 ORTHO05D008203 7.5e-16 87.4 99 51.5
Oeu011414.1 Olea europaea HOM05D006441 ORTHO05D008203 2.4e-14 82.4 62 64.5
RcHm_v2.0_Chr1g0321821 Rosa chinensis HOM05D006441 ORTHO05D008203 3.5e-13 78.6 56 67.9
Lj4A166T80 Lonicera japonica HOM05D006441 ORTHO05D008203 2.9e-12 75.5 75 50.7
CSS0047485 Camellia sinensis var. sinensis HOM05D006441 ORTHO05D008203 5.0e-12 74.7 43 76.7
Peaxi162Scf00096g01848 Petunia axillaris HOM05D006441 ORTHO05D008203 3.6e-10 68.6 99 43.4
BcaB04g19401 Brassica carinata HOM05D006441 ORTHO05D008203 1.4e-06 56.6 35 71.4
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 2.4e-06 55.8 74 43.2


User provided reference genes

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