Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G2833 Cannabis sativa HOM05D005878 ORTHO05D007433 4.3e-125 451.4 245 100.0
arahy.Tifrunner.gnm1.ann1.7Y8XE1 Arachis hypogaea HOM05D005878 ORTHO05D007433 1.2e-69 267.3 237 66.7
Prupe.2G044200 Prunus persica HOM05D005878 ORTHO05D007433 3.3e-69 265.8 235 68.9
MD00G1152600 Malus domestica HOM05D005878 ORTHO05D007433 1.8e-67 260.0 236 68.2
arahy.Tifrunner.gnm1.ann1.RJ91AH Arachis hypogaea HOM05D005878 ORTHO05D007433 4.1e-67 258.8 237 65.8
QL04p021553 Quercus lobata HOM05D005878 ORTHO05D007433 1.2e-66 257.3 231 64.9
RcHm_v2.0_Chr1g0327631 Rosa chinensis HOM05D005878 ORTHO05D007433 1.2e-66 257.3 239 66.9
FAN01G0732 Fragaria x ananassa HOM05D005878 ORTHO05D007433 2.7e-66 256.1 240 65.0
MD07G1043600 Malus domestica HOM05D005878 ORTHO05D007433 1.0e-65 254.2 236 67.8
COL.COLO4_05616 Corchorus olitorius HOM05D005878 ORTHO05D007433 1.7e-65 253.4 236 65.7
Cfa010961 Carpinus fangiana HOM05D005878 ORTHO05D007433 3.8e-65 252.3 240 65.0
Lalb_Chr01g0007451 Lupinus albus HOM05D005878 ORTHO05D007433 5.0e-65 251.9 234 65.4
Thecc.10G140600 Theobroma cacao HOM05D005878 ORTHO05D007433 1.9e-64 250.0 233 63.1
FAN06G2676 Fragaria x ananassa HOM05D005878 ORTHO05D007433 3.2e-64 249.2 240 63.8
Gorai.012G019700 Gossypium raimondii HOM05D005878 ORTHO05D007433 7.2e-64 248.1 240 63.3
CiPaw.14G010200 Carya illinoinensis HOM05D005878 ORTHO05D007433 9.4e-64 247.7 225 67.1
FvH4_7g03940 Fragaria vesca HOM05D005878 ORTHO05D007433 1.6e-63 246.9 240 63.3
Gohir.D04G017000 Gossypium hirsutum HOM05D005878 ORTHO05D007433 2.1e-63 246.5 240 62.9
Gohir.A05G398900 Gossypium hirsutum HOM05D005878 ORTHO05D007433 2.7e-63 246.1 240 62.1
Aqoxy2G00498 Aquilegia oxysepala HOM05D005878 ORTHO05D007433 3.6e-63 245.7 225 66.7
Duzib114G0830 Durio zibethinus HOM05D005878 ORTHO05D007433 1.8e-62 243.4 233 61.4
PGR031G0581 Punica granatum HOM05D005878 ORTHO05D007433 4.0e-62 242.3 194 69.6
TWI38G1150 Tripterygium wilfordii HOM05D005878 ORTHO05D007433 6.8e-62 241.5 217 63.6
Haze_02979 Corylus avellana HOM05D005878 ORTHO05D007433 8.8e-62 241.1 258 60.5
Phvul.005G018300 Phaseolus vulgaris HOM05D005878 ORTHO05D007433 1.2e-61 240.7 225 63.1
TAR633G2731 Trochodendron aralioides HOM05D005878 ORTHO05D007433 2.6e-61 239.6 240 62.5
Ca_14245_v3 Cicer arietinum L. HOM05D005878 ORTHO05D007433 3.4e-61 239.2 194 72.2
Thhalv10014567m.g Eutrema salsugineum HOM05D005878 ORTHO05D007433 1.3e-60 237.3 179 74.9
VMungo1080G0593 Vigna mungo HOM05D005878 ORTHO05D007433 1.7e-60 236.9 204 66.7
TAR636G2836 Trochodendron aralioides HOM05D005878 ORTHO05D007433 2.2e-60 236.5 223 63.2
Glyma.06G309000 Glycine max HOM05D005878 ORTHO05D007433 2.8e-60 236.1 208 67.3
Manes.11G008200 Manihot esculenta HOM05D005878 ORTHO05D007433 2.8e-60 236.1 213 66.2
BcaB05g21633 Brassica carinata HOM05D005878 ORTHO05D007433 3.7e-60 235.7 237 62.0
MELO3C012494.2 Cucumis melo HOM05D005878 ORTHO05D007433 4.8e-60 235.3 218 62.4
BcaB05g21635 Brassica carinata HOM05D005878 ORTHO05D007433 8.3e-60 234.6 202 67.8
BcaC03g13174 Brassica carinata HOM05D005878 ORTHO05D007433 8.3e-60 234.6 202 67.8
BolC2t06258H Brassica oleracea HOM05D005878 ORTHO05D007433 8.3e-60 234.6 202 67.8
Medtr3g013460 Medicago truncatula HOM05D005878 ORTHO05D007433 8.3e-60 234.6 201 68.7
Hund13399 Selenicereus undatus HOM05D005878 ORTHO05D007433 8.3e-60 234.6 201 68.2
Migut.B01182 Erythranthe guttata HOM05D005878 ORTHO05D007433 1.1e-59 234.2 239 59.8
Peaxi162Scf00220g00235 Petunia axillaris HOM05D005878 ORTHO05D007433 1.1e-59 234.2 209 64.1
A10p28810 Brassica napus HOM05D005878 ORTHO05D007433 3.1e-59 232.6 212 64.6
BcaC06g32524 Brassica carinata HOM05D005878 ORTHO05D007433 5.4e-59 231.9 201 66.7
Nn7g36933 Nelumbo nucifera HOM05D005878 ORTHO05D007433 5.4e-59 231.9 244 60.7
BraA10t44928Z Brassica rapa HOM05D005878 ORTHO05D007433 9.1e-59 231.1 212 64.2
Ciclev10002378m.g Citrus clementina HOM05D005878 ORTHO05D007433 9.1e-59 231.1 232 58.6
ClCG05G027000 Citrullus lanatus HOM05D005878 ORTHO05D007433 1.2e-58 230.7 248 59.3
PGSC0003DMG400003288 Solanum tuberosum HOM05D005878 ORTHO05D007433 1.6e-58 230.3 238 60.5
THA.LOC104799332 Tarenaya hassleriana HOM05D005878 ORTHO05D007433 1.6e-58 230.3 237 60.8
Glyma.04G132400 Glycine max HOM05D005878 ORTHO05D007433 2.0e-58 229.9 206 66.0
CsaV3_5G036960 Cucumis sativus L. HOM05D005878 ORTHO05D007433 2.7e-58 229.6 238 57.6
Nitab4.5_0004168g0090 Nicotiana tabacum HOM05D005878 ORTHO05D007433 2.7e-58 229.6 254 56.7
C02p02970 Brassica napus HOM05D005878 ORTHO05D007433 3.5e-58 229.2 227 61.2
Dinv02557 Davidia involucrata HOM05D005878 ORTHO05D007433 3.5e-58 229.2 219 60.3
EL10Ac2g02748 Beta vulgaris HOM05D005878 ORTHO05D007433 4.5e-58 228.8 199 65.8
Nitab4.5_0002838g0030 Nicotiana tabacum HOM05D005878 ORTHO05D007433 4.5e-58 228.8 256 58.2
BcaNung04204 Brassica carinata HOM05D005878 ORTHO05D007433 5.9e-58 228.4 212 64.6
C09p69150 Brassica napus HOM05D005878 ORTHO05D007433 5.9e-58 228.4 212 64.6
BolC9t59659H Brassica oleracea HOM05D005878 ORTHO05D007433 7.7e-58 228.0 212 64.6
Cc00_g09800 Coffea canephora HOM05D005878 ORTHO05D007433 7.7e-58 228.0 233 59.2
Actinidia01690 Actinidia chinensis HOM05D005878 ORTHO05D007433 1.0e-57 227.6 229 59.8
PSO339G1146 Papaver somniferum HOM05D005878 ORTHO05D007433 2.3e-57 226.5 234 57.7
Rhsim10G0180100 Rhododendron simsii HOM05D005878 ORTHO05D007433 2.9e-57 226.1 177 74.0
Dinv32002 Davidia involucrata HOM05D005878 ORTHO05D007433 3.8e-57 225.7 215 62.3
Solyc01g096660.3 Solanum lycopersicum HOM05D005878 ORTHO05D007433 3.8e-57 225.7 241 59.3
Sopen01g040380 Solanum pennellii HOM05D005878 ORTHO05D007433 3.8e-57 225.7 238 59.7
CARHR206130 Cardamine hirsuta HOM05D005878 ORTHO05D007433 5.0e-57 225.3 188 68.6
MBI03_g46805_MAGBIO Magnolia biondii HOM05D005878 ORTHO05D007433 5.0e-57 225.3 233 58.8
AL6G17170 Arabidopsis lyrata HOM05D005878 ORTHO05D007433 6.5e-57 224.9 184 68.5
Eucgr.G03205 Eucalyptus grandis HOM05D005878 ORTHO05D007433 6.5e-57 224.9 221 63.3
Carub.0006s0594 Capsella rubella HOM05D005878 ORTHO05D007433 1.1e-56 224.2 169 72.8
MBI03_g45113_MAGBIO Magnolia biondii HOM05D005878 ORTHO05D007433 1.1e-56 224.2 233 58.4
Sp6g35860 Schrenkiella parvula HOM05D005878 ORTHO05D007433 1.1e-56 224.2 209 64.6
Sed0004070 Sechium edule HOM05D005878 ORTHO05D007433 1.1e-56 224.2 216 61.1
CSS0046372 Camellia sinensis var. sinensis HOM05D005878 ORTHO05D007433 1.9e-56 223.4 176 70.5
Lj3g0011478 Lotus japonicus HOM05D005878 ORTHO05D007433 3.2e-56 222.6 240 58.3
TWI15G0528 Tripterygium wilfordii HOM05D005878 ORTHO05D007433 3.2e-56 222.6 244 56.1
Actinidia01520 Actinidia chinensis HOM05D005878 ORTHO05D007433 5.5e-56 221.9 229 58.5
AUR62032609 Chenopodium quinoa HOM05D005878 ORTHO05D007433 7.2e-56 221.5 150 78.0
Sc14g0005230 Simmondsia chinensis HOM05D005878 ORTHO05D007433 7.2e-56 221.5 234 61.1
AT5G07020 Arabidopsis thaliana HOM05D005878 ORTHO05D007433 9.5e-56 221.1 187 67.9
SalBow2G0433 Salvia bowleyana HOM05D005878 ORTHO05D007433 2.1e-55 219.9 174 68.4
SalBow2G2419 Salvia bowleyana HOM05D005878 ORTHO05D007433 2.1e-55 219.9 174 68.4
ECA248G2695 Erigeron canadensis HOM05D005878 ORTHO05D007433 2.8e-55 219.5 202 62.9
PSO384G4469 Papaver somniferum HOM05D005878 ORTHO05D007433 1.0e-54 217.6 234 56.0
ATR1136G020 Amborella trichopoda HOM05D005878 ORTHO05D007433 1.2e-53 214.2 203 59.1
HanXRQChr11g0341301 Helianthus annuus HOM05D005878 ORTHO05D007433 1.5e-53 213.8 214 59.8
Oeu006783.1 Olea europaea HOM05D005878 ORTHO05D007433 1.5e-53 213.8 214 59.8
BraA02t04902Z Brassica rapa HOM05D005878 ORTHO05D007433 3.4e-53 212.6 231 59.3
MSTRG.16973 Avicennia marina HOM05D005878 ORTHO05D007433 4.4e-53 212.2 222 57.2
DCAR_006594 Daucus carota HOM05D005878 ORTHO05D007433 9.8e-53 211.1 224 56.2
HPP92_016121 Vanilla planifolia HOM05D005878 ORTHO05D007433 1.1e-51 207.6 224 54.0
Lsat_1_v5_gn_9_74980 Lactuca sativa HOM05D005878 ORTHO05D007433 2.4e-51 206.5 238 55.5
FAN03G0529 Fragaria x ananassa HOM05D005878 ORTHO05D007433 5.4e-51 205.3 198 65.7
unitig_22.g5332 Utricularia gibba HOM05D005878 ORTHO05D007433 1.2e-50 204.1 238 55.9
vmacro20585 Vaccinium macrocarpon HOM05D005878 ORTHO05D007433 1.2e-50 204.1 267 53.6
GSVIVG01036595001 Vitis vinifera HOM05D005878 ORTHO05D007433 5.9e-50 201.8 215 57.7
Aa31sc25G160 Aethionema arabicum HOM05D005878 ORTHO05D007433 1.7e-49 200.3 134 76.1
CDE08G0208 Ceratophyllum demersum HOM05D005878 ORTHO05D007433 1.7e-49 200.3 230 55.2
Potri.003G192800 Populus trichocarpa HOM05D005878 ORTHO05D007433 2.3e-49 199.9 243 54.7
Zm00001eb182020 Zea mays HOM05D005878 ORTHO05D007433 2.9e-49 199.5 166 64.5
AUR62001069 Chenopodium quinoa HOM05D005878 ORTHO05D007433 3.3e-48 196.1 132 79.5
CDE02G0435 Ceratophyllum demersum HOM05D005878 ORTHO05D007433 9.5e-48 194.5 225 52.9
Os02g0556800 Oryza sativa ssp. japonica HOM05D005878 ORTHO05D007433 3.6e-47 192.6 171 62.0
Cpa.g.sc188.4 Carica papaya HOM05D005878 ORTHO05D007433 2.0e-45 186.8 118 82.2
TPR.G1450 Trifolium pratense HOM05D005878 ORTHO05D007433 7.5e-45 184.9 141 75.2
Lj9A656G41 Lonicera japonica HOM05D005878 ORTHO05D007433 1.7e-44 183.7 166 63.9
Hma1.2p1_0233F.1_g098360 Hydrangea macrophylla HOM05D005878 ORTHO05D007433 4.9e-44 182.2 128 73.4
AagrBONN_evm.TU.Sc2ySwM_117.450 Anthoceros agrestis HOM05D005878 ORTHO05D007433 1.4e-43 180.6 227 48.9
SEGI_13955 Sequoiadendron giganteum HOM05D005878 ORTHO05D007433 1.4e-43 180.6 187 54.5
Atru.chr12.1246 Acer truncatum HOM05D005878 ORTHO05D007433 2.4e-43 179.9 216 54.2
SGA_v2.0_scaffold430G51553 Striga asiatica HOM05D005878 ORTHO05D007433 2.4e-43 179.9 153 64.1
AagrBONN_evm.TU.Sc2ySwM_117.1283 Anthoceros agrestis HOM05D005878 ORTHO05D007433 5.4e-43 178.7 206 53.9
Mapoly0116s0014 Marchantia polymorpha HOM05D005878 ORTHO05D007433 1.9e-40 170.2 186 52.7
A03p56860 Brassica napus HOM05D005878 ORTHO05D007433 9.5e-40 167.9 133 71.4
Pp3c8_5370 Physcomitrium patens HOM05D005878 ORTHO05D007433 3.1e-38 162.9 194 51.5
Pp3c3_32790 Physcomitrium patens HOM05D005878 ORTHO05D007433 4.0e-38 162.5 231 45.5
Psat5g223120 Pisum sativum HOM05D005878 ORTHO05D007433 6.8e-38 161.8 217 52.5
Hma1.2p1_0233F.1_g098370 Hydrangea macrophylla HOM05D005878 ORTHO05D007433 4.4e-37 159.1 111 75.7
SMO143G0125 Selaginella moellendorffii HOM05D005878 ORTHO05D007433 6.4e-36 155.2 170 54.1
AUR62031722 Chenopodium quinoa HOM05D005878 ORTHO05D007433 1.2e-26 124.4 165 50.3
TAR628G0990 Trochodendron aralioides HOM05D005878 ORTHO05D007433 2.7e-26 123.2 164 51.8
BcaC03g13176 Brassica carinata HOM05D005878 ORTHO05D007433 1.1e-24 117.9 111 56.8
Eucgr.L03611 Eucalyptus grandis HOM05D005878 ORTHO05D007433 1.4e-22 110.9 117 55.6
Atru.chr2.3038 Acer truncatum HOM05D005878 ORTHO05D007433 2.4e-19 100.1 97 60.8
CBR_g50344 Chara braunii HOM05D005878 ORTHO05D007433 3.2e-19 99.8 191 37.7
Atru.chr7.1915 Acer truncatum HOM05D005878 ORTHO05D007433 6.9e-14 82.0 106 47.2
Atru.chr3.2623 Acer truncatum HOM05D005878 ORTHO05D007433 1.5e-13 80.9 83 56.6
Potri.001G032200 Populus trichocarpa HOM05D005878 ORTHO05D007433 7.8e-10 68.6 217 33.6
PGSC0003DMG400040390 Solanum tuberosum HOM05D005878 ORTHO05D007433 1.6e-07 60.8 46 63.0
C07p55210 Brassica napus HOM05D005878 ORTHO05D033170 1.8e-06 57.4 95 50.5
BolC7t45992H Brassica oleracea HOM05D005878 ORTHO05D033170 4.0e-06 56.2 97 50.5


User provided reference genes

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