Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 2.7e-208 728.4 364 100.0
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 8.0e-168 594.0 363 78.2
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 1.2e-163 580.1 365 78.9
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 5.9e-163 577.8 363 76.6
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 2.5e-161 572.4 363 77.1
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 5.5e-161 571.2 364 76.6
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 9.4e-161 570.5 364 76.9
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 1.6e-160 569.7 363 76.3
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 6.1e-160 567.8 357 76.5
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.0e-159 567.0 364 76.1
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.4e-159 566.6 364 76.1
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 1.4e-159 566.6 363 75.2
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 2.3e-159 565.8 362 74.9
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 5.2e-159 564.7 362 75.1
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 5.2e-159 564.7 362 75.1
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 1.3e-157 560.1 413 69.2
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 1.3e-157 560.1 362 74.3
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 2.2e-157 559.3 362 74.0
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.8e-157 558.9 367 74.9
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 2.8e-157 558.9 364 72.3
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 4.8e-157 558.1 366 73.8
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 1.8e-156 556.2 364 72.8
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 5.4e-156 554.7 364 72.3
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 9.1e-156 553.9 363 74.4
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 1.2e-155 553.5 374 71.4
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 4.5e-155 551.6 370 71.6
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 1.3e-154 550.1 365 73.7
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 1.7e-154 549.7 370 71.9
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 1.1e-153 547.0 363 71.9
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 1.5e-153 546.6 366 71.9
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 1.9e-153 546.2 363 72.7
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 5.5e-153 544.7 363 71.9
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 1.2e-152 543.5 366 71.6
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 4.7e-152 541.6 366 72.4
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 1.0e-151 540.4 363 71.6
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 1.4e-151 540.0 363 72.5
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 1.4e-151 540.0 363 71.3
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 1.8e-151 539.7 363 71.3
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 4.0e-151 538.5 363 70.5
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 3.4e-150 535.4 370 70.8
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 5.7e-150 534.6 363 72.2
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 1.7e-149 533.1 363 69.7
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 2.2e-149 532.7 358 75.4
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 2.2e-149 532.7 369 70.7
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 2.2e-149 532.7 360 70.6
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 2.8e-149 532.3 362 70.7
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 6.3e-149 531.2 352 73.3
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 8.3e-149 530.8 355 73.8
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 8.3e-149 530.8 355 73.8
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 8.3e-149 530.8 364 70.1
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 1.4e-148 530.0 362 69.3
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 2.4e-148 529.3 362 70.2
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 5.4e-148 528.1 362 69.3
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 5.4e-148 528.1 362 69.6
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 7.0e-148 527.7 362 68.8
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 1.2e-147 526.9 362 70.2
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 2.0e-147 526.2 364 70.3
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 2.7e-147 525.8 362 70.4
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 2.7e-147 525.8 352 72.4
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 2.7e-147 525.8 362 69.9
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 5.9e-147 524.6 358 72.3
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.9e-146 522.3 397 66.0
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 2.9e-146 522.3 375 67.2
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 2.9e-146 522.3 368 68.8
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 2.9e-146 522.3 365 69.6
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 8.6e-146 520.8 352 72.7
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 1.1e-145 520.4 364 71.2
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 1.5e-145 520.0 362 68.2
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 4.3e-145 518.5 362 68.2
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 7.3e-145 517.7 396 65.2
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 9.5e-145 517.3 362 68.0
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 9.5e-145 517.3 368 68.2
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 2.1e-144 516.2 362 69.6
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 2.8e-144 515.8 360 68.6
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 6.1e-144 514.6 384 68.0
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 1.8e-143 513.1 321 76.9
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.3e-143 512.7 364 69.2
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 1.2e-142 510.4 360 68.6
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 1.5e-142 510.0 398 65.1
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 4.4e-142 508.4 364 66.5
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 5.8e-142 508.1 364 68.7
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 6.0e-139 498.0 362 65.5
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 3.9e-138 495.4 364 65.7
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 5.0e-138 495.0 390 62.8
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 8.6e-138 494.2 319 74.0
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 1.1e-137 493.8 363 68.3
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.5e-137 492.7 390 62.6
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 7.3e-137 491.1 356 66.6
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 9.5e-137 490.7 390 62.3
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 6.4e-133 478.0 362 66.6
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 2.4e-132 476.1 364 66.5
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 2.4e-132 476.1 364 66.5
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 2.4e-132 476.1 316 75.6
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 2.7e-131 472.6 359 64.1
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 7.8e-131 471.1 357 63.9
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 2.3e-130 469.5 363 65.3
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 2.3e-130 469.5 382 63.9
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 1.1e-129 467.2 321 68.5
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 2.5e-129 466.1 358 64.0
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.1e-127 460.7 355 65.4
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 6.8e-127 458.0 366 62.6
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.4e-124 450.3 363 61.4
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 3.5e-123 445.7 334 68.6
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 1.3e-122 443.7 299 73.6
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 2.3e-122 443.0 302 73.5
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 5.1e-122 441.8 299 72.2
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 4.3e-121 438.7 293 71.3
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 3.6e-120 435.6 299 70.6
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 4.0e-111 405.6 390 55.1
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 6.2e-104 381.7 290 64.8
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 1.5e-102 377.1 363 56.2
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 2.0e-102 376.7 364 55.2
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 2.2e-101 373.2 363 50.7
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 6.4e-101 371.7 287 61.3
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 3.2e-100 369.4 356 55.9
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 2.7e-99 366.3 348 52.3
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 4.3e-97 359.0 367 52.6
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 2.9e-93 346.3 342 50.3
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 7.1e-92 341.7 311 50.5
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 1.0e-90 337.8 340 50.3
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 3.1e-87 326.2 222 73.4
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 4.5e-86 322.4 269 61.3
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 1.1e-81 307.8 222 70.3
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 1.4e-63 247.7 154 72.1
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 9.7e-57 224.9 329 38.6
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 2.6e-54 216.9 135 74.8
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 1.6e-46 191.0 379 32.7
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 7.7e-38 162.2 137 58.4
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 2.5e-36 157.1 128 62.5
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 3.6e-35 153.3 337 30.6
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 4.7e-35 152.9 199 45.2
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 8.3e-32 142.1 103 67.0
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 4.1e-31 139.8 136 52.2
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 1.0e-29 135.2 116 58.6
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 8.6e-29 132.1 85 74.1
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.9e-28 131.0 85 72.9
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 2.8e-27 127.1 344 27.0
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 9.8e-25 118.6 92 69.6
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.7e-24 117.9 87 63.2
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.1e-23 113.2 83 63.9
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 1.1e-20 105.1 78 62.8
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 4.3e-20 103.2 111 50.5
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 7.3e-20 102.4 79 60.8
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 2.1e-19 100.9 111 49.5
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.8e-19 100.5 78 60.3
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.8e-19 100.5 78 60.3
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 4.7e-19 99.8 104 53.8
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.7e-19 99.8 79 59.5
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 6.2e-19 99.4 78 60.3
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 8.1e-19 99.0 78 60.3
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.1e-18 98.6 78 59.0
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.2e-18 96.3 79 60.8
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.6e-17 94.0 70 64.3
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.6e-17 94.0 79 58.2
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.1e-15 86.7 101 47.5
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 5.4e-15 86.3 62 64.5
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 1.6e-14 84.7 73 57.5
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 7.8e-14 82.4 45 84.4
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.5e-12 77.4 111 45.0
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 2.5e-12 77.4 67 59.7
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 9.5e-12 75.5 56 66.1
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 8.4e-08 62.4 52 55.8
Aa31LG5G23020 Aethionema arabicum HOM05D004259 ORTHO05D005014 1.1e-07 62.0 48 62.5
Cc01_g09720 Coffea canephora HOM05D004259 ORTHO05D005014 1.9e-07 61.2 43 65.1
Cc10_g11800 Coffea canephora HOM05D006912 ORTHO05D008686 7.1e-07 59.3 43 60.5
Gohir.D09G037800 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.6e-06 56.6 43 65.1
Cc02_g31720 Coffea canephora HOM05D004259 ORTHO05D005014 6.0e-06 56.2 42 59.5


User provided reference genes

Program Settings