Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G2773 Cannabis sativa HOM05D007686 ORTHO05D009709 4.9e-38 163.3 79 100.0
CiPaw.05G168000 Carya illinoinensis HOM05D007686 ORTHO05D009709 1.6e-28 131.7 79 77.2
RcHm_v2.0_Chr4g0432731 Rosa chinensis HOM05D007686 ORTHO05D009709 7.9e-28 129.4 79 73.4
Prupe.1G242700 Prunus persica HOM05D007686 ORTHO05D009709 1.3e-27 128.6 77 77.9
FAN12G1967 Fragaria x ananassa HOM05D007686 ORTHO05D009709 1.8e-27 128.3 76 76.3
Potri.008G185000 Populus trichocarpa HOM05D007686 ORTHO05D009709 1.3e-25 122.1 78 73.1
Sabra08G0140000 Salix brachista HOM05D007686 ORTHO05D009709 1.3e-25 122.1 78 73.1
TWI18G1075 Tripterygium wilfordii HOM05D007686 ORTHO05D009709 1.3e-25 122.1 77 76.6
Gohir.A04G137000 Gossypium hirsutum HOM05D007686 ORTHO05D009709 1.6e-25 121.7 79 72.2
Dinv14741 Davidia involucrata HOM05D007686 ORTHO05D009709 2.8e-25 120.9 78 74.4
TWI36G0128 Tripterygium wilfordii HOM05D007686 ORTHO05D009709 4.8e-25 120.2 77 74.0
arahy.Tifrunner.gnm1.ann1.BXJH78 Arachis hypogaea HOM05D007686 ORTHO05D009709 6.2e-25 119.8 80 71.2
Psat7g058760 Pisum sativum HOM05D007686 ORTHO05D009709 8.2e-25 119.4 80 70.0
Ciclev10031251m.g Citrus clementina HOM05D007686 ORTHO05D009709 1.1e-24 119.0 79 72.2
Gohir.D04G180200 Gossypium hirsutum HOM05D007686 ORTHO05D009709 1.1e-24 119.0 79 70.9
TPR.G6255 Trifolium pratense HOM05D007686 ORTHO05D009709 1.4e-24 118.6 80 71.2
Lalb_Chr07g0185471 Lupinus albus HOM05D007686 ORTHO05D009709 4.0e-24 117.1 80 70.0
Cpa.g.sc33.48 Carica papaya HOM05D007686 ORTHO05D009709 5.3e-24 116.7 79 70.9
Medtr8g089700 Medicago truncatula HOM05D007686 ORTHO05D009709 9.0e-24 115.9 80 68.8
MD13G1103100 Malus domestica HOM05D007686 ORTHO05D009709 1.5e-23 115.2 67 77.6
Manes.13G022000 Manihot esculenta HOM05D007686 ORTHO05D009709 1.5e-23 115.2 79 68.4
Manes.13G021400 Manihot esculenta HOM05D007686 ORTHO05D009709 3.4e-23 114.0 79 68.4
Glyma.08G131100 Glycine max HOM05D007686 ORTHO05D009709 7.6e-23 112.8 77 68.8
Phvul.002G258900 Phaseolus vulgaris HOM05D007686 ORTHO05D009709 1.3e-22 112.1 77 68.8
Thecc.02G263700 Theobroma cacao HOM05D007686 ORTHO05D009709 1.7e-22 111.7 79 67.1
PGR119G1810 Punica granatum HOM05D007686 ORTHO05D009709 2.2e-22 111.3 79 65.8
Ca_17785_v3 Cicer arietinum L. HOM05D007686 ORTHO05D009709 2.9e-22 110.9 80 66.2
Glyma.05G173932 Glycine max HOM05D007686 ORTHO05D009709 2.9e-22 110.9 76 68.4
Migut.K00622 Erythranthe guttata HOM05D007686 ORTHO05D009709 8.4e-22 109.4 78 65.4
CsaV3_5G030960 Cucumis sativus L. HOM05D007686 ORTHO05D009709 1.1e-21 109.0 79 65.8
SGA_v2.0_scaffold100G29576 Striga asiatica HOM05D007686 ORTHO05D009709 1.4e-21 108.6 78 62.8
Lj4g0016926 Lotus japonicus HOM05D007686 ORTHO05D009709 1.9e-21 108.2 71 73.2
HanXRQChr08g0208401 Helianthus annuus HOM05D007686 ORTHO05D009709 4.2e-21 107.1 77 66.2
CSS0050065 Camellia sinensis var. sinensis HOM05D007686 ORTHO05D009709 7.9e-20 102.8 62 79.0
ClCG05G025900 Citrullus lanatus HOM05D007686 ORTHO05D009709 1.3e-19 102.1 75 64.0
MD16G1103300 Malus domestica HOM05D007686 ORTHO05D009709 2.3e-19 101.3 59 78.0
ECA233G6157 Erigeron canadensis HOM05D007686 ORTHO05D009709 3.0e-19 100.9 74 64.9
Sed0013465 Sechium edule HOM05D007686 ORTHO05D009709 3.9e-19 100.5 73 65.8
Solyc06g008190.1 Solanum lycopersicum HOM05D007686 ORTHO05D009709 5.1e-19 100.1 68 69.1
Sopen06g003050 Solanum pennellii HOM05D007686 ORTHO05D009709 5.1e-19 100.1 68 69.1
Gorai.012G173300 Gossypium raimondii HOM05D007686 ORTHO05D009709 6.7e-19 99.8 66 71.2
Nitab4.5_0001839g0010 Nicotiana tabacum HOM05D007686 ORTHO05D009709 8.7e-19 99.4 63 71.4
Eucgr.H02473 Eucalyptus grandis HOM05D007686 ORTHO05D009709 1.5e-18 98.6 76 60.5
DCAR_031167 Daucus carota HOM05D002540 ORTHO05D002672 1.9e-18 98.2 69 66.7
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 2.5e-18 97.8 72 65.3
MSTRG.555 Avicennia marina HOM05D007686 ORTHO05D009709 3.3e-18 97.4 66 69.7
AUR62011787 Chenopodium quinoa HOM05D007686 ORTHO05D009709 4.3e-18 97.1 66 71.2
Lj3P1060G37 Lonicera japonica HOM05D007686 ORTHO05D009709 4.3e-18 97.1 66 69.7
Nitab4.5_0000067g0230 Nicotiana tabacum HOM05D007686 ORTHO05D009709 4.3e-18 97.1 60 75.0
CDE05G1633 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 7.4e-18 96.3 71 63.4
Rhsim12G0039200 Rhododendron simsii HOM05D007686 ORTHO05D009709 6.3e-17 93.2 58 75.9
Hma1.2p1_0815F.1_g222720 Hydrangea macrophylla HOM05D007686 ORTHO05D009709 1.4e-16 92.0 59 74.6
QL03p056833 Quercus lobata HOM05D007686 ORTHO05D009709 5.3e-16 90.1 54 75.9
QL93p1848_0021 Quercus lobata HOM05D007686 ORTHO05D009709 5.3e-16 90.1 54 75.9
GSVIVG01000559001 Vitis vinifera HOM05D007686 ORTHO05D009709 6.9e-16 89.7 59 71.2
Atru.chr11.2166 Acer truncatum HOM05D007686 ORTHO05D009709 1.2e-15 89.0 53 81.1
SHI17831 Sapria himalayana HOM05D007686 ORTHO05D009709 7.7e-15 86.3 74 62.2
EL10Ac7g16785 Beta vulgaris HOM05D007686 ORTHO05D009709 1.7e-14 85.1 62 67.7
COL.COLO4_23488 Corchorus olitorius HOM05D007686 ORTHO05D009709 2.5e-13 81.3 45 80.0
Os07g0688100 Oryza sativa ssp. japonica HOM05D007686 ORTHO05D009709 7.2e-13 79.7 72 50.0
FvH4_4g25420 Fragaria vesca HOM05D007686 ORTHO05D009709 4.6e-12 77.0 47 72.3
Sc06g0009620 Simmondsia chinensis HOM05D007686 ORTHO05D009709 4.6e-12 77.0 56 67.9
Sp1g11590 Schrenkiella parvula HOM05D007686 ORTHO05D009709 1.0e-11 75.9 53 71.7
Zm00001eb331140 Zea mays HOM05D007686 ORTHO05D009709 1.4e-11 75.5 70 50.0
AT1G13040 Arabidopsis thaliana HOM05D007686 ORTHO05D009709 1.8e-11 75.1 53 71.7
AL1G24690 Arabidopsis lyrata HOM05D007686 ORTHO05D009709 3.0e-11 74.3 53 71.7
Carub.0001s1279 Capsella rubella HOM05D007686 ORTHO05D009709 3.0e-11 74.3 53 71.7
BcaC05g25091 Brassica carinata HOM05D007686 ORTHO05D009709 5.1e-11 73.6 51 70.6
A06p08670 Brassica napus HOM05D002540 ORTHO05D002672 5.1e-11 73.6 51 70.6
BolC5t29774H Brassica oleracea HOM05D007686 ORTHO05D009709 5.1e-11 73.6 51 70.6
BraA06t24064Z Brassica rapa HOM05D007686 ORTHO05D009709 5.1e-11 73.6 51 70.6
CARHR013370 Cardamine hirsuta HOM05D007686 ORTHO05D009709 6.7e-11 73.2 51 72.5
PSO724G0460 Papaver somniferum HOM05D007686 ORTHO05D009709 6.7e-11 73.2 53 64.2
Aqoxy2G03020 Aquilegia oxysepala HOM05D007686 ORTHO05D009709 8.8e-11 72.8 47 72.3
C05p10280 Brassica napus HOM05D002540 ORTHO05D002672 1.1e-10 72.4 51 68.6
C08p15790 Brassica napus HOM05D002540 ORTHO05D002672 1.1e-10 72.4 51 72.5
BolC8t49205H Brassica oleracea HOM05D002540 ORTHO05D002672 1.1e-10 72.4 51 72.5
Thhalv10007381m.g Eutrema salsugineum HOM05D007686 ORTHO05D009709 1.1e-10 72.4 51 70.6
THA.LOC104805275 Tarenaya hassleriana HOM05D007686 ORTHO05D009709 1.1e-10 72.4 50 72.0
Aa31LG1G1760 Aethionema arabicum HOM05D007686 ORTHO05D009709 2.0e-10 71.6 52 69.2
PSO135G0590 Papaver somniferum HOM05D007686 ORTHO05D009709 2.5e-10 71.2 57 57.9
PGSC0003DMG400014696 Solanum tuberosum HOM05D007686 ORTHO05D009709 2.5e-10 71.2 44 77.3
A08p32500 Brassica napus HOM05D007686 ORTHO05D009709 3.3e-10 70.9 51 72.5
BraA08t35174Z Brassica rapa HOM05D007686 ORTHO05D009709 3.3e-10 70.9 51 72.5
TAR383G0079 Trochodendron aralioides HOM05D007686 ORTHO05D009709 5.7e-10 70.1 46 71.7
Gohir.A03G132900 Gossypium hirsutum HOM05D007686 ORTHO05D009709 9.7e-10 69.3 45 71.1
Lsat_1_v5_gn_8_152860 Lactuca sativa HOM05D007686 ORTHO05D009709 1.7e-09 68.6 44 68.2
HPP92_012781 Vanilla planifolia HOM05D007686 ORTHO05D009709 6.3e-09 66.6 41 70.7
Oeu049173.1 Olea europaea HOM05D007686 ORTHO05D009709 1.4e-08 65.5 45 62.2
CAN.G941.2 Capsicum annuum HOM05D007686 ORTHO05D009709 2.0e-07 61.6 165 29.1


User provided reference genes

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