Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G2759 Cannabis sativa HOM05D005950 ORTHO05D008673 1.2e-158 563.1 287 100.0
RcHm_v2.0_Chr4g0428871 Rosa chinensis HOM05D005950 ORTHO05D008673 4.2e-103 378.6 272 72.4
FAN17G1731 Fragaria x ananassa HOM05D005950 ORTHO05D008673 1.6e-102 376.7 272 72.1
FvH4_4g22640 Fragaria vesca HOM05D005950 ORTHO05D008673 6.0e-102 374.8 272 72.1
FAN12G2095 Fragaria x ananassa HOM05D005950 ORTHO05D008673 1.0e-101 374.0 272 71.7
QL03p049137 Quercus lobata HOM05D005950 ORTHO05D008673 1.0e-101 374.0 253 74.3
FAN07G2488 Fragaria x ananassa HOM05D005950 ORTHO05D008673 1.7e-101 373.2 273 72.2
CsaV3_6G007730 Cucumis sativus L. HOM05D005950 ORTHO05D008673 3.9e-101 372.1 278 69.1
MELO3C022359.2 Cucumis melo HOM05D005950 ORTHO05D008673 3.3e-100 369.0 269 71.4
CiPaw.05G101200 Carya illinoinensis HOM05D005950 ORTHO05D008673 4.3e-100 368.6 252 75.0
MD13G1130900 Malus domestica HOM05D005950 ORTHO05D008673 9.6e-100 367.5 284 66.5
Haze_12503 Corylus avellana HOM05D005950 ORTHO05D008673 1.2e-99 367.1 257 72.4
CSS0041196 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 4.7e-99 365.2 240 75.0
CSS0009236 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 6.2e-99 364.8 240 75.0
Potri.001G100300 Populus trichocarpa HOM05D005950 ORTHO05D008673 1.1e-98 364.0 261 70.5
Sed0005763 Sechium edule HOM05D005950 ORTHO05D008673 1.1e-98 364.0 279 68.5
Eucgr.B03560 Eucalyptus grandis HOM05D005950 ORTHO05D008673 1.8e-98 363.2 275 68.7
PGR102G2360 Punica granatum HOM05D005950 ORTHO05D008673 1.8e-98 363.2 275 69.1
Atru.chr12.1419 Acer truncatum HOM05D005950 ORTHO05D008673 5.3e-98 361.7 241 75.9
Ciclev10005525m.g Citrus clementina HOM05D005950 ORTHO05D008673 9.0e-98 360.9 243 74.5
Ah.03g135560 Amaranthus hybridus HOM05D005950 ORTHO05D008673 1.2e-97 360.5 249 72.3
Aqoxy5G03108 Aquilegia oxysepala HOM05D005950 ORTHO05D008673 9.9e-97 357.5 271 68.3
Prupe.1G214800 Prunus persica HOM05D005950 ORTHO05D008673 9.9e-97 357.5 282 67.4
Duzib248G1270 Durio zibethinus HOM05D005950 ORTHO05D008673 1.3e-96 357.1 246 73.2
Manes.08G101200 Manihot esculenta HOM05D005950 ORTHO05D008673 2.9e-96 355.9 278 67.6
MBI10_g32324_MAGBIO Magnolia biondii HOM05D005950 ORTHO05D008673 8.4e-96 354.4 245 72.2
RhsimUnG0153300 Rhododendron simsii HOM05D005950 ORTHO05D008673 1.1e-95 354.0 280 64.3
EL10Ac6g13611 Beta vulgaris HOM05D005950 ORTHO05D008673 1.4e-95 353.6 238 73.1
Gorai.002G021400 Gossypium raimondii HOM05D005950 ORTHO05D008673 1.4e-95 353.6 257 68.5
Rhsim12G0072500 Rhododendron simsii HOM05D005950 ORTHO05D008673 1.9e-95 353.2 280 64.3
Actinidia33998 Actinidia chinensis HOM05D005950 ORTHO05D008673 2.4e-95 352.8 240 72.5
GSVIVG01001090001 Vitis vinifera HOM05D005950 ORTHO05D008673 2.4e-95 352.8 257 70.4
AUR62005715 Chenopodium quinoa HOM05D005950 ORTHO05D008673 3.2e-95 352.4 246 70.7
COL.COLO4_36001 Corchorus olitorius HOM05D005950 ORTHO05D008673 3.2e-95 352.4 242 73.1
Gohir.A01G020600 Gossypium hirsutum HOM05D005950 ORTHO05D008673 9.3e-95 350.9 257 68.5
Dinv03756 Davidia involucrata HOM05D005950 ORTHO05D008673 1.2e-94 350.5 237 73.4
Hma1.2p1_0660F.1_g197630 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 2.7e-94 349.4 243 70.8
Thecc.02G192100 Theobroma cacao HOM05D005950 ORTHO05D008673 1.0e-93 347.4 292 63.0
BolC5t31407H Brassica oleracea HOM05D005950 ORTHO05D008673 1.3e-93 347.1 274 65.3
Lsat_1_v5_gn_3_32320 Lactuca sativa HOM05D005950 ORTHO05D008673 2.3e-93 346.3 242 70.2
TWI36G0089 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 2.3e-93 346.3 241 71.4
BcaC05g26819 Brassica carinata HOM05D005950 ORTHO05D008673 5.1e-93 345.1 268 66.8
C05p26890 Brassica napus HOM05D005950 ORTHO05D008673 5.1e-93 345.1 269 66.9
DCAR_024633 Daucus carota HOM05D000512 ORTHO05D008673 6.6e-93 344.7 230 73.5
Migut.K01055 Erythranthe guttata HOM05D005950 ORTHO05D008673 8.7e-93 344.4 264 67.0
Lalb_Chr06g0164721 Lupinus albus HOM05D005950 ORTHO05D008673 1.1e-92 344.0 289 61.9
Cpa.g.sc182.2 Carica papaya HOM05D005950 ORTHO05D008673 1.5e-92 343.6 236 72.9
TAR371G0811 Trochodendron aralioides HOM05D005950 ORTHO05D008673 1.5e-92 343.6 241 72.2
BraA09t39303Z Brassica rapa HOM05D005950 ORTHO05D008673 1.9e-92 343.2 269 66.9
CAN.G624.24 Capsicum annuum HOM05D005950 ORTHO05D008673 1.9e-92 343.2 249 67.1
Nitab4.5_0006153g0020 Nicotiana tabacum HOM05D005950 ORTHO05D008673 1.9e-92 343.2 241 70.1
Hund27394 Selenicereus undatus HOM05D005950 ORTHO05D008673 2.5e-92 342.8 244 68.0
Peaxi162Scf00023g00931 Petunia axillaris HOM05D005950 ORTHO05D008673 3.3e-92 342.4 283 62.5
THA.LOC104820536 Tarenaya hassleriana HOM05D005950 ORTHO05D008673 4.3e-92 342.0 278 63.7
BcaB07g32425 Brassica carinata HOM05D005950 ORTHO05D008673 5.6e-92 341.7 265 66.8
LjContig00470g0001843 Lotus japonicus HOM05D005950 ORTHO05D008673 7.3e-92 341.3 229 72.1
A09p37910 Brassica napus HOM05D005950 ORTHO05D008673 9.6e-92 340.9 269 66.2
Phvul.007G000300 Phaseolus vulgaris HOM05D005950 ORTHO05D008673 1.3e-91 340.5 231 72.3
Sabra01G0075200 Salix brachista HOM05D005950 ORTHO05D008673 1.3e-91 340.5 317 59.0
Cc11_g15000 Coffea canephora HOM05D005950 ORTHO05D008673 2.8e-91 339.3 242 69.0
PGSC0003DMG400028387 Solanum tuberosum HOM05D005950 ORTHO05D008673 2.8e-91 339.3 246 66.7
CARHR027610 Cardamine hirsuta HOM05D005950 ORTHO05D008673 4.8e-91 338.6 268 67.5
Medtr1g099520 Medicago truncatula HOM05D005950 ORTHO05D008673 6.2e-91 338.2 248 69.8
SalBow2G0445 Salvia bowleyana HOM05D005950 ORTHO05D008673 8.1e-91 337.8 280 62.5
Aa31sc45G70 Aethionema arabicum HOM05D005950 ORTHO05D008673 1.1e-90 337.4 271 66.4
Solyc05g012700.3 Solanum lycopersicum HOM05D005950 ORTHO05D008673 1.1e-90 337.4 246 66.3
HanXRQChr06g0175111 Helianthus annuus HOM05D005950 ORTHO05D008673 1.4e-90 337.0 256 69.1
Nitab4.5_0000208g0380 Nicotiana tabacum HOM05D005950 ORTHO05D008673 1.8e-90 336.7 241 68.9
TPR.G7754 Trifolium pratense HOM05D005950 ORTHO05D008673 1.8e-90 336.7 282 64.9
AT1G28140 Arabidopsis thaliana HOM05D005950 ORTHO05D008673 2.4e-90 336.3 274 64.6
Carub.0001s2657 Capsella rubella HOM05D005950 ORTHO05D008673 2.4e-90 336.3 271 63.1
Sc19g0003090 Simmondsia chinensis HOM05D005950 ORTHO05D008673 2.4e-90 336.3 225 71.6
Sopen05g007530 Solanum pennellii HOM05D005950 ORTHO05D008673 2.4e-90 336.3 246 65.9
Thhalv10008446m.g Eutrema salsugineum HOM05D005950 ORTHO05D008673 4.0e-90 335.5 272 65.1
MSTRG.8054 Avicennia marina HOM05D005950 ORTHO05D008673 5.3e-90 335.1 261 65.5
arahy.Tifrunner.gnm1.ann1.MTDN4F Arachis hypogaea HOM05D005950 ORTHO05D008673 1.2e-89 334.0 263 63.9
TAR629G3081 Trochodendron aralioides HOM05D005950 ORTHO05D008673 1.2e-89 334.0 284 63.4
VMungo0720G2460 Vigna mungo HOM05D005950 ORTHO05D008673 1.2e-89 334.0 282 61.7
Sp1g24330 Schrenkiella parvula HOM05D005950 ORTHO05D008673 2.0e-89 333.2 276 64.1
AL1G41670 Arabidopsis lyrata HOM05D005950 ORTHO05D008673 3.4e-89 332.4 264 65.9
CDE02G3863 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 3.4e-89 332.4 219 73.1
Oeu027106.1 Olea europaea HOM05D005950 ORTHO05D008673 4.5e-89 332.0 225 72.4
ATR0582G132 Amborella trichopoda HOM05D005950 ORTHO05D008673 7.6e-89 331.3 240 65.0
vmacro16072 Vaccinium macrocarpon HOM05D005950 ORTHO05D008673 1.1e-87 327.4 300 59.7
Os03g0850600 Oryza sativa ssp. japonica HOM05D005950 ORTHO05D008673 1.4e-87 327.0 225 71.1
HPP92_007045 Vanilla planifolia HOM05D005950 ORTHO05D008673 1.9e-87 326.6 225 68.4
SGA_v2.0_scaffold157G37356 Striga asiatica HOM05D005950 ORTHO05D008673 3.2e-87 325.9 267 65.2
PSO017G6070 Papaver somniferum HOM05D005950 ORTHO05D008673 4.2e-87 325.5 238 68.1
PSO478G4484 Papaver somniferum HOM05D005950 ORTHO05D008673 6.0e-86 321.6 281 60.9
Pp3c8_12800 Physcomitrium patens HOM05D005950 ORTHO05D008673 3.9e-85 318.9 257 61.9
Zm00001eb064540 Zea mays HOM05D005950 ORTHO05D008673 1.5e-84 317.0 230 67.4
SMO367G1143 Selaginella moellendorffii HOM05D005950 ORTHO05D008673 4.3e-84 315.5 242 64.0
unitig_747.g21110 Utricularia gibba HOM05D005950 ORTHO05D008673 1.8e-82 310.1 258 62.4
ClCG06G001700 Citrullus lanatus HOM05D005950 ORTHO05D008673 3.4e-81 305.8 239 66.9
AagrBONN_evm.TU.Sc2ySwM_344.2741 Anthoceros agrestis HOM05D005950 ORTHO05D008673 7.6e-81 304.7 270 59.6
Mapoly0027s0093 Marchantia polymorpha HOM05D005950 ORTHO05D008673 2.9e-80 302.8 227 65.6
Lj3A1077T57 Lonicera japonica HOM05D005950 ORTHO05D008673 8.4e-80 301.2 206 73.8
Ca_10708_v3 Cicer arietinum L. HOM05D005950 ORTHO05D008673 7.1e-79 298.1 259 64.1
Psat6g195320 Pisum sativum HOM05D005950 ORTHO05D008673 2.7e-78 296.2 220 70.0
Duzib052G0358 Durio zibethinus HOM05D005950 ORTHO05D008673 1.8e-77 293.5 226 69.0
Glyma.20G249800 Glycine max HOM05D005950 ORTHO05D008673 1.8e-77 293.5 243 63.8
SEGI_01129 Sequoiadendron giganteum HOM05D005950 ORTHO05D008673 4.8e-75 285.4 208 64.9
AUR62028840 Chenopodium quinoa HOM05D005950 ORTHO05D008673 3.8e-72 275.8 206 66.0
CBR_g3659 Chara braunii HOM05D005950 ORTHO05D008673 2.1e-70 270.0 236 57.2
arahy.Tifrunner.gnm1.ann1.PXY63F Arachis hypogaea HOM05D005950 ORTHO05D008673 1.1e-68 264.2 290 50.3
Hma1.2p1_0660F.1_g197620 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 1.7e-64 250.4 184 67.4
Nn3g16271 Nelumbo nucifera HOM05D005950 ORTHO05D008673 9.4e-63 244.6 248 53.6
CDE06G2125 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 1.4e-58 230.7 140 77.9
MCO02G210 Micromonas commoda HOM05D005950 ORTHO05D008673 2.2e-48 196.8 214 47.7
TWI18G1378 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 3.6e-46 189.5 148 65.5
Cre04.g228450 Chlamydomonas reinhardtii HOM05D005950 ORTHO05D008673 3.3e-44 183.0 240 40.8
PRCOL_00003015 Prasinoderma coloniale HOM05D005950 ORTHO05D008673 2.6e-36 156.8 214 38.8
TPR.G36353 Trifolium pratense HOM05D005950 ORTHO05D008673 4.5e-33 146.0 87 83.9
Gohir.D01G019100 Gossypium hirsutum HOM05D005950 ORTHO05D008673 4.0e-29 132.9 125 54.4
Peaxi162Scf00040g00101 Petunia axillaris HOM05D005950 ORTHO05D008673 2.6e-28 130.2 137 52.6
Zm00001eb422050 Zea mays HOM05D005950 ORTHO05D008673 2.0e-20 104.0 82 61.0
MD16G1141000 Malus domestica HOM05D005950 ORTHO05D020170 5.7e-20 102.4 61 80.3
FAN25G3256 Fragaria x ananassa HOM05D005950 ORTHO05D203075 4.9e-19 99.4 88 61.4
Hma1.2p1_0660F.1_g197640 Hydrangea macrophylla HOM05D005950 ORTHO05D020170 4.9e-19 99.4 56 82.1
Zm00001eb141620 Zea mays HOM05D005950 ORTHO05D444810 3.5e-17 93.2 68 61.8
FAN20G0916 Fragaria x ananassa HOM05D005950 ORTHO05D020170 5.9e-17 92.4 58 75.9
AL1G56270 Arabidopsis lyrata HOM05D005950 ORTHO05D000283 1.2e-14 84.7 62 67.7
Peaxi162Scf00003g00713 Petunia axillaris HOM05D005950 ORTHO05D305722 4.7e-14 82.8 136 36.8
C05p26860 Brassica napus HOM05D005950 ORTHO05D020170 1.4e-13 81.3 51 74.5
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 1.4e-13 81.3 63 58.7
BolC5t31405H Brassica oleracea HOM05D005950 ORTHO05D020170 1.2e-12 78.2 52 69.2
Glyma.10G298600 Glycine max HOM05D005950 ORTHO05D020170 7.5e-12 75.5 48 72.9
CDE06G1299 Ceratophyllum demersum HOM05D005950 ORTHO05D130736 1.7e-11 74.3 57 66.7
A09p37930 Brassica napus HOM05D005950 ORTHO05D020170 2.2e-11 73.9 53 66.0
Peaxi162Scf00059g01815 Petunia axillaris HOM05D005950 ORTHO05D306406 2.2e-11 73.9 170 34.1
Peaxi162Scf00968g00313 Petunia axillaris HOM05D005950 ORTHO05D305879 7.0e-10 68.9 103 39.8
Peaxi162Scf00141g00098 Petunia axillaris HOM05D005950 ORTHO05D306108 2.5e-07 60.5 43 65.1
AL4G33820 Arabidopsis lyrata HOM05D005950 ORTHO05D080589 4.7e-06 56.2 82 42.7


User provided reference genes

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