Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 1.3e-177 626.3 330 100.0
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 1.3e-124 450.3 333 68.8
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 3.8e-124 448.7 333 68.2
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 7.1e-123 444.5 332 69.0
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 2.1e-119 433.0 332 66.3
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 3.1e-118 429.1 333 67.0
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 4.4e-117 425.2 333 67.3
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 4.2e-115 418.7 333 65.2
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 1.6e-114 416.8 331 65.6
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 2.1e-114 416.4 332 66.3
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 1.1e-112 410.6 333 66.1
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 4.3e-112 408.7 333 65.2
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 1.3e-111 407.1 332 64.8
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 1.8e-110 403.3 331 64.7
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 5.3e-110 401.7 332 63.6
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 1.2e-109 400.6 331 63.7
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 2.0e-109 399.8 333 65.2
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 3.4e-109 399.1 332 60.5
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 3.4e-109 399.1 332 60.5
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 7.6e-109 397.9 333 64.3
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 2.2e-108 396.4 332 62.3
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 4.2e-107 392.1 335 63.0
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 7.1e-107 391.3 334 62.9
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 6.0e-106 388.3 339 63.7
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.3e-105 387.1 332 59.6
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.8e-105 386.7 333 63.4
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 2.3e-105 386.3 333 60.4
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 3.0e-105 386.0 333 63.4
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 5.1e-105 385.2 332 62.0
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 1.5e-104 383.6 331 62.2
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 1.9e-104 383.3 333 60.1
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.9e-104 383.3 332 59.6
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 3.3e-104 382.5 333 62.8
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 5.6e-104 381.7 331 59.8
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 5.6e-104 381.7 333 62.5
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 9.6e-104 380.9 331 59.5
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 9.6e-104 380.9 327 60.2
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.1e-102 377.5 339 62.5
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 2.4e-102 376.3 329 62.3
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 3.1e-102 375.9 328 61.9
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 1.5e-101 373.6 337 60.8
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 1.5e-101 373.6 334 59.0
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.0e-100 370.9 329 62.3
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 1.0e-100 370.9 333 59.2
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 4.9e-100 368.6 335 60.9
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 1.4e-99 367.1 334 58.1
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.9e-99 366.7 333 62.5
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 1.9e-99 366.7 331 58.9
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 2.5e-99 366.3 337 60.8
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 2.5e-99 366.3 334 58.4
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 5.5e-99 365.2 326 59.8
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 5.5e-99 365.2 308 70.1
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 1.2e-98 364.0 334 59.9
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.2e-98 364.0 334 58.1
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 3.5e-98 362.5 333 59.8
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 1.3e-97 360.5 334 59.3
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 5.7e-96 355.1 332 58.4
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 7.4e-96 354.8 338 58.0
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 9.6e-96 354.4 337 59.1
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 1.3e-95 354.0 385 51.9
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 1.6e-95 353.6 334 58.4
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 3.7e-95 352.4 333 57.4
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 6.2e-95 351.7 338 56.8
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 1.1e-94 350.9 335 58.5
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 1.4e-94 350.5 333 57.4
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 4.0e-94 349.0 335 57.6
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 9.0e-94 347.8 337 57.0
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 1.2e-93 347.4 372 54.6
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 1.3e-92 344.0 280 63.2
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 2.9e-92 342.8 335 57.3
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 3.8e-92 342.4 324 56.2
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 3.8e-92 342.4 340 56.8
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 5.0e-92 342.0 338 55.6
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 1.6e-90 337.0 330 55.8
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 6.1e-90 335.1 356 55.3
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 7.9e-90 334.7 286 59.1
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 5.1e-89 332.0 355 54.1
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 6.7e-89 331.6 338 54.7
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 8.7e-89 331.3 342 52.9
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 1.9e-88 330.1 333 55.0
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 3.3e-88 329.3 273 60.8
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 4.3e-88 328.9 335 55.8
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 4.3e-88 328.9 335 55.8
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 4.3e-88 328.9 335 55.8
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 4.3e-88 328.9 339 55.5
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 7.4e-88 328.2 341 54.8
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 9.7e-88 327.8 337 53.1
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 2.2e-87 326.6 332 52.7
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 3.7e-87 325.9 332 53.9
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 3.7e-87 325.9 334 53.3
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 1.8e-86 323.6 330 55.8
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 3.1e-86 322.8 375 50.4
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 6.9e-86 321.6 273 60.1
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 1.9e-83 313.5 321 53.0
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 2.5e-83 313.2 340 52.6
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 3.2e-83 312.8 335 52.5
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 3.2e-83 312.8 335 52.5
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 7.2e-83 311.6 332 54.5
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 1.2e-82 310.8 247 66.4
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 1.6e-82 310.5 333 52.0
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 1.6e-82 310.5 343 51.3
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 4.6e-82 308.9 307 55.4
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 7.9e-82 308.1 332 52.4
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 1.4e-81 307.4 326 52.8
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 3.0e-81 306.2 331 52.6
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 1.5e-80 303.9 331 52.0
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 2.0e-80 303.5 340 51.2
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 2.0e-80 303.5 326 52.5
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 2.5e-80 303.1 342 49.7
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 2.5e-80 303.1 336 53.3
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 7.4e-80 301.6 341 49.9
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.3e-79 300.8 341 49.6
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 2.8e-79 299.7 341 49.3
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 8.2e-79 298.1 330 49.7
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 1.1e-78 297.7 338 51.5
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 2.4e-78 296.6 326 50.9
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 1.5e-77 293.9 322 50.0
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 2.0e-77 293.5 330 51.5
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 4.5e-77 292.4 338 50.6
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 1.0e-76 291.2 335 50.1
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 1.0e-76 291.2 338 50.6
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 1.9e-75 287.0 254 60.2
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 1.6e-74 283.9 317 52.7
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 7.9e-74 281.6 332 50.6
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 1.8e-73 280.4 367 47.1
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 1.8e-73 280.4 318 45.9
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 5.1e-73 278.9 221 64.3
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 2.0e-72 276.9 323 47.7
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 1.4e-70 270.8 278 53.2
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 7.7e-69 265.0 338 47.0
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 2.5e-67 260.0 333 49.2
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 3.2e-67 259.6 325 48.6
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 2.7e-66 256.5 297 49.2
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 2.7e-66 256.5 235 58.3
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 2.7e-66 256.5 320 50.6
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 1.0e-65 254.6 242 53.3
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 1.1e-62 244.6 322 46.3
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 7.2e-59 231.9 256 52.0
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 1.4e-54 217.6 328 42.7
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 7.0e-54 215.3 233 48.9
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 1.2e-53 214.5 174 62.6
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 2.7e-53 213.4 216 56.9
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 7.7e-53 211.8 165 64.8
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 2.2e-52 210.3 164 61.6
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 2.5e-51 206.8 330 43.0
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 4.7e-50 202.6 203 58.6
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.0e-49 201.4 203 58.1
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.8e-49 200.7 203 58.6
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 3.4e-48 196.4 228 46.9
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 5.9e-45 185.7 174 58.6
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 4.2e-43 179.5 326 39.3
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.4e-41 174.5 148 59.5
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 1.3e-39 167.9 165 57.6
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 3.9e-36 156.4 160 55.0
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 2.5e-35 153.7 124 63.7
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 1.6e-34 151.0 131 55.0
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 4.9e-31 139.4 199 46.2
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 5.4e-30 136.0 143 48.3
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 4.6e-29 132.9 214 41.1
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 3.0e-28 130.2 134 54.5
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 1.1e-27 128.3 122 53.3
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 2.4e-22 110.5 98 58.2
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 1.6e-21 107.8 222 32.0
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 3.9e-20 103.2 90 56.7
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 1.4e-17 94.7 105 42.9
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 7.6e-16 89.0 63 66.7
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 6.0e-13 79.3 306 28.1
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 7.3e-11 72.4 52 69.2
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 4.7e-10 69.7 59 62.7
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 5.2e-09 66.2 255 28.2
VMungo1127G1263 Vigna mungo HOM05D004073 ORTHO05D004785 1.4e-06 58.2 52 57.7


User provided reference genes

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