Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G2672 Cannabis sativa HOM05D007586 ORTHO05D009554 2.1e-38 161.8 76 100.0
Potri.008G198500 Populus trichocarpa HOM05D007586 ORTHO05D009554 6.0e-17 90.5 55 74.5
Ciclev10006319m.g Citrus clementina HOM05D007586 ORTHO05D009554 7.8e-17 90.1 52 76.9
Sabra08G0162000 Salix brachista HOM05D007586 ORTHO05D009554 7.8e-17 90.1 55 72.7
TWI09G0380 Tripterygium wilfordii HOM05D007586 ORTHO05D009554 2.3e-16 88.6 55 74.5
Hma1.2p1_0511F.1_g169220 Hydrangea macrophylla HOM05D000488 ORTHO05D000347 5.1e-16 87.4 47 80.9
Potri.010G028000 Populus trichocarpa HOM05D007586 ORTHO05D009554 1.1e-15 86.3 45 84.4
Atru.chr4.2702 Acer truncatum HOM05D007586 ORTHO05D009554 1.9e-15 85.5 50 72.0
SalBow2G2177 Salvia bowleyana HOM05D007586 ORTHO05D009554 1.9e-15 85.5 48 77.1
Aa31LG11G10810 Aethionema arabicum HOM05D007586 ORTHO05D009554 2.5e-15 85.1 67 64.2
arahy.Tifrunner.gnm1.ann1.SH255N Arachis hypogaea HOM05D007586 ORTHO05D009554 2.5e-15 85.1 65 58.5
Migut.G00284 Erythranthe guttata HOM05D007586 ORTHO05D009554 2.5e-15 85.1 71 60.6
Hma1.2p1_2025F.1_g311520 Hydrangea macrophylla HOM05D007586 ORTHO05D009554 2.5e-15 85.1 45 80.0
ATR0626G363 Amborella trichopoda HOM05D007586 ORTHO05D009554 3.3e-15 84.7 52 71.2
arahy.Tifrunner.gnm1.ann1.5VHG73 Arachis hypogaea HOM05D007586 ORTHO05D009554 3.3e-15 84.7 65 56.9
Actinidia00073 Actinidia chinensis HOM05D007586 ORTHO05D009554 4.3e-15 84.3 42 85.7
Haze_01009 Corylus avellana HOM05D007586 ORTHO05D009554 4.3e-15 84.3 50 74.0
DCAR_027132 Daucus carota HOM05D007586 ORTHO05D009554 4.3e-15 84.3 58 65.5
Sp6g25470 Schrenkiella parvula HOM05D007586 ORTHO05D009554 4.3e-15 84.3 49 73.5
Nn4g26123 Nelumbo nucifera HOM05D007586 ORTHO05D009554 5.6e-15 84.0 60 66.7
BraA10t44138Z Brassica rapa HOM05D007586 ORTHO05D009554 1.2e-14 82.8 61 60.7
CsaV3_6G005530 Cucumis sativus L. HOM05D007586 ORTHO05D009554 1.2e-14 82.8 56 64.3
Thhalv10015193m.g Eutrema salsugineum HOM05D007586 ORTHO05D009554 1.2e-14 82.8 61 62.3
EL10Ac3g07262 Beta vulgaris HOM05D007586 ORTHO05D009554 1.6e-14 82.4 61 57.4
ClCG06G005620 Citrullus lanatus HOM05D007586 ORTHO05D009554 2.8e-14 81.6 56 62.5
Nitab4.5_0009518g0010 Nicotiana tabacum HOM05D007586 ORTHO05D009554 2.8e-14 81.6 44 79.5
Sopen01g032230 Solanum pennellii HOM05D007586 ORTHO05D009554 3.6e-14 81.3 50 66.0
A03p09170 Brassica napus HOM05D007586 ORTHO05D009554 4.7e-14 80.9 49 71.4
BraA03t10240Z Brassica rapa HOM05D007586 ORTHO05D009554 4.7e-14 80.9 49 71.4
Cpa.g.sc16.72 Carica papaya HOM05D007586 ORTHO05D009554 4.7e-14 80.9 44 75.0
Lj6g0006659 Lotus japonicus HOM05D007586 ORTHO05D009554 4.7e-14 80.9 49 69.4
vmacro15289 Vaccinium macrocarpon HOM05D007586 ORTHO05D009554 4.7e-14 80.9 47 70.2
BcaB01g04886 Brassica carinata HOM05D007586 ORTHO05D009554 8.1e-14 80.1 63 61.9
CiPaw.02G089500 Carya illinoinensis HOM05D007586 ORTHO05D009554 8.1e-14 80.1 53 67.9
Dinv38351 Davidia involucrata HOM05D007586 ORTHO05D009554 8.1e-14 80.1 45 75.6
Lj3g0017006 Lotus japonicus HOM05D007586 ORTHO05D009554 8.1e-14 80.1 45 75.6
Medtr2g020920 Medicago truncatula HOM05D007586 ORTHO05D009554 8.1e-14 80.1 60 58.3
BcaB01g05279 Brassica carinata HOM05D007586 ORTHO05D009554 1.1e-13 79.7 49 69.4
C03p10700 Brassica napus HOM05D007586 ORTHO05D009554 1.1e-13 79.7 49 69.4
QL06p006198 Quercus lobata HOM05D007586 ORTHO05D009554 1.1e-13 79.7 53 67.9
arahy.Tifrunner.gnm1.ann1.70FWSL Arachis hypogaea HOM05D007586 ORTHO05D009554 1.4e-13 79.3 50 64.0
Manes.03G188100 Manihot esculenta HOM05D007586 ORTHO05D009554 1.4e-13 79.3 53 64.2
Sed0005131 Sechium edule HOM05D007586 ORTHO05D009554 1.4e-13 79.3 60 58.3
Nitab4.5_0000201g0230 Nicotiana tabacum HOM05D007586 ORTHO05D009554 1.8e-13 79.0 46 71.7
Phvul.006G158400 Phaseolus vulgaris HOM05D007586 ORTHO05D009554 1.8e-13 79.0 59 62.7
BolC3t13546H Brassica oleracea HOM05D007586 ORTHO05D009554 2.4e-13 78.6 45 75.6
COL.COLO4_13963 Corchorus olitorius HOM05D007586 ORTHO05D009554 2.4e-13 78.6 65 55.4
CSS0032912 Camellia sinensis var. sinensis HOM05D007586 ORTHO05D009554 3.1e-13 78.2 41 82.9
Cc03_g02750 Coffea canephora HOM05D007586 ORTHO05D009554 4.0e-13 77.8 45 71.1
Lalb_Chr18g0055891 Lupinus albus HOM05D007586 ORTHO05D009554 4.0e-13 77.8 46 69.6
A10p20750 Brassica napus HOM05D007586 ORTHO05D009554 5.2e-13 77.4 56 64.3
Cfa015540 Carpinus fangiana HOM05D007586 ORTHO05D009554 5.2e-13 77.4 50 66.0
Gohir.D10G162600 Gossypium hirsutum HOM05D007586 ORTHO05D009554 5.2e-13 77.4 61 62.3
Gorai.011G181700 Gossypium raimondii HOM05D007586 ORTHO05D009554 5.2e-13 77.4 61 62.3
TPR.G18017 Trifolium pratense HOM05D007586 ORTHO05D009554 5.2e-13 77.4 46 69.6
GSVIVG01017851001 Vitis vinifera HOM05D007586 ORTHO05D009554 5.2e-13 77.4 45 73.3
CARHR194100 Cardamine hirsuta HOM05D007586 ORTHO05D009554 6.8e-13 77.0 48 68.8
Glyma.13G212100 Glycine max HOM05D007586 ORTHO05D009554 8.9e-13 76.6 55 61.8
Ah.04g150810 Amaranthus hybridus HOM05D007586 ORTHO05D009554 1.2e-12 76.3 57 61.4
Thecc.04G272400 Theobroma cacao HOM05D007586 ORTHO05D009554 1.5e-12 75.9 54 64.8
Gohir.A10G105800 Gossypium hirsutum HOM05D007586 ORTHO05D009554 2.0e-12 75.5 61 62.3
MD13G1177700 Malus domestica HOM05D007586 ORTHO05D009554 2.0e-12 75.5 56 62.5
Duzib151G0133 Durio zibethinus HOM05D007586 ORTHO05D009554 2.6e-12 75.1 61 59.0
MBI19_g21636_MAGBIO Magnolia biondii HOM05D007586 ORTHO05D009554 3.4e-12 74.7 40 77.5
THA.LOC104802735 Tarenaya hassleriana HOM05D007586 ORTHO05D009554 3.4e-12 74.7 46 65.2
Glyma.15G100600 Glycine max HOM05D007586 ORTHO05D009554 4.4e-12 74.3 50 66.0
Nitab4.5_0000059g0210 Nicotiana tabacum HOM05D007586 ORTHO05D009554 4.4e-12 74.3 49 69.4
Prupe.1G146700 Prunus persica HOM05D007586 ORTHO05D009554 4.4e-12 74.3 50 66.0
Psat1g185520 Pisum sativum HOM05D007586 ORTHO05D009554 5.8e-12 73.9 49 63.3
ECA246G1660 Erigeron canadensis HOM05D007586 ORTHO05D009554 1.3e-11 72.8 44 65.9
PSO832G2949 Papaver somniferum HOM05D007586 ORTHO05D009554 1.3e-11 72.8 45 66.7
AUR62018376 Chenopodium quinoa HOM05D000949 ORTHO05D001276 1.7e-11 72.4 49 65.3
PSO210G0926 Papaver somniferum HOM05D007586 ORTHO05D009554 2.9e-11 71.6 41 73.2
unitig_749.g14058 Utricularia gibba HOM05D007586 ORTHO05D009554 2.9e-11 71.6 58 55.2
Medtr2g020940 Medicago truncatula HOM05D007586 ORTHO05D009554 3.8e-11 71.2 50 62.0
SEGI_37206 Sequoiadendron giganteum HOM05D007586 ORTHO05D009554 4.9e-11 70.9 48 56.2
Phvul.006G158200 Phaseolus vulgaris HOM05D007586 ORTHO05D009554 1.4e-10 69.3 56 51.8
Zm00001eb349880 Zea mays HOM05D007586 ORTHO05D009554 1.4e-10 69.3 42 64.3
Ca_00589_v3 Cicer arietinum L. HOM05D002494 ORTHO05D002673 2.4e-10 68.6 39 71.8
RcHm_v2.0_Chr4g0420101 Rosa chinensis HOM05D007586 ORTHO05D009554 9.2e-10 66.6 38 68.4
FvH4_4g16650 Fragaria vesca HOM05D007586 ORTHO05D009554 3.5e-09 64.7 54 50.0
FAN12G0362 Fragaria x ananassa HOM05D007586 ORTHO05D009554 3.5e-09 64.7 54 50.0
Eucgr.B01188 Eucalyptus grandis HOM05D007586 ORTHO05D009554 4.6e-09 64.3 34 76.5
COL.COLO4_25734 Corchorus olitorius HOM05D007586 ORTHO05D009554 1.0e-08 63.2 38 63.2
TAR636G1069 Trochodendron aralioides HOM05D007586 ORTHO05D009554 1.7e-08 62.4 32 81.2
AL6G30270 Arabidopsis lyrata HOM05D007586 ORTHO05D009554 2.3e-08 62.0 35 71.4
AT5G18920 Arabidopsis thaliana HOM05D007586 ORTHO05D009554 2.3e-08 62.0 35 71.4
Carub.0006s1722 Capsella rubella HOM05D007586 ORTHO05D009554 2.3e-08 62.0 35 71.4
PGR031G0345 Punica granatum HOM05D007586 ORTHO05D009554 8.7e-08 60.1 35 68.6
BcaB08g36636 Brassica carinata HOM05D007586 ORTHO05D009554 1.5e-07 59.3 62 45.2
Os05g0404300 Oryza sativa ssp. japonica HOM05D007586 ORTHO05D009554 2.5e-07 58.5 36 61.1
Peaxi162Scf00095g00411 Petunia axillaris HOM05D007586 ORTHO05D009554 3.3e-07 58.2 32 75.0
Pp3c2_37920 Physcomitrium patens HOM05D007586 ORTHO05D009554 4.3e-07 57.8 49 44.9
Hund24561 Selenicereus undatus HOM05D007586 ORTHO05D009554 2.1e-06 55.5 41 63.4
AUR62030290 Chenopodium quinoa HOM05D004624 ORTHO05D005357 3.6e-06 54.7 35 68.6
Rhsim02G0016900 Rhododendron simsii HOM05D007586 ORTHO05D009554 8.1e-06 53.5 29 79.3


User provided reference genes

Program Settings