Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G2664 Cannabis sativa HOM05D004773 ORTHO05D005943 8.5e-168 593.6 296 100.0
arahy.Tifrunner.gnm1.ann1.WJU3K5 Arachis hypogaea HOM05D004773 ORTHO05D005943 2.8e-110 402.5 307 68.1
Thhalv10014121m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 4.7e-110 401.7 296 67.6
QL09p005927 Quercus lobata HOM05D004773 ORTHO05D005943 1.4e-109 400.2 300 67.3
Lj1P1212T41 Lonicera japonica HOM05D004773 ORTHO05D005943 3.1e-109 399.1 287 68.6
MD15G1141100 Malus domestica HOM05D004773 ORTHO05D005943 3.1e-109 399.1 296 69.9
AL6G28660 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 4.0e-109 398.7 319 63.6
HanXRQChr17g0555701 Helianthus annuus HOM05D004773 ORTHO05D005943 6.8e-109 397.9 281 69.4
Carub.0006s1581 Capsella rubella HOM05D004773 ORTHO05D005943 8.9e-109 397.5 298 65.8
C09p59580 Brassica napus HOM05D004773 ORTHO05D005943 3.4e-108 395.6 297 67.0
Atru.chr2.1725 Acer truncatum HOM05D004773 ORTHO05D005943 4.4e-108 395.2 305 65.2
A10p21830 Brassica napus HOM05D004773 ORTHO05D008759 4.4e-108 395.2 313 64.9
Sp6g26650 Schrenkiella parvula HOM05D004773 ORTHO05D005943 5.8e-108 394.8 301 67.4
BcaB08g36761 Brassica carinata HOM05D004773 ORTHO05D005943 7.5e-108 394.4 302 65.9
BcaC04g18778 Brassica carinata HOM05D004773 ORTHO05D005943 7.5e-108 394.4 297 66.7
BolC9t58797H Brassica oleracea HOM05D004773 ORTHO05D005943 7.5e-108 394.4 297 66.7
Psat1g096800 Pisum sativum HOM05D004773 ORTHO05D005943 9.8e-108 394.0 295 68.5
Haze_00339 Corylus avellana HOM05D004773 ORTHO05D005943 1.3e-107 393.7 304 64.8
Cfa016123 Carpinus fangiana HOM05D004773 ORTHO05D005943 2.2e-107 392.9 304 64.5
AT5G17570 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 2.9e-107 392.5 300 65.0
Rhsim02G0120400 Rhododendron simsii HOM05D000873 ORTHO05D002948 4.9e-107 391.7 285 68.8
vmacro15870 Vaccinium macrocarpon HOM05D004773 ORTHO05D005943 4.9e-107 391.7 299 65.2
Actinidia11804 Actinidia chinensis HOM05D004773 ORTHO05D005943 6.4e-107 391.3 288 66.7
Ciclev10032178m.g Citrus clementina HOM05D004773 ORTHO05D005943 1.1e-106 390.6 304 66.8
Ca_04503_v3 Cicer arietinum L. HOM05D004773 ORTHO05D005943 1.4e-106 390.2 305 65.6
Prupe.7G272000 Prunus persica HOM05D004773 ORTHO05D005943 1.9e-106 389.8 296 68.9
CiPaw.05G210200 Carya illinoinensis HOM05D004773 ORTHO05D005943 2.4e-106 389.4 304 65.1
Cc02_g12570 Coffea canephora HOM05D004773 ORTHO05D005943 2.4e-106 389.4 294 65.0
Lalb_Chr06g0173871 Lupinus albus HOM05D004773 ORTHO05D005943 2.4e-106 389.4 303 65.3
Medtr6g033025 Medicago truncatula HOM05D004773 ORTHO05D005943 3.2e-106 389.0 305 65.2
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 4.1e-106 388.7 305 63.3
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 5.4e-106 388.3 302 65.6
ECA234G3816 Erigeron canadensis HOM05D004773 ORTHO05D005943 5.4e-106 388.3 283 68.6
Manes.08G158200 Manihot esculenta HOM05D004773 ORTHO05D005943 9.2e-106 387.5 305 64.6
Lsat_1_v5_gn_4_57340 Lactuca sativa HOM05D004773 ORTHO05D005943 1.6e-105 386.7 281 66.5
Lj2g0008141 Lotus japonicus HOM05D004773 ORTHO05D005943 4.6e-105 385.2 305 64.6
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 6.0e-105 384.8 302 64.6
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.0e-104 384.0 283 69.3
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.3e-104 382.9 283 68.9
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 6.6e-104 381.3 285 64.9
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 6.6e-104 381.3 283 68.9
Hma1.2p1_0144F.1_g064840 Hydrangea macrophylla HOM05D004773 ORTHO05D005943 8.6e-104 380.9 285 66.0
Aa31LG11G12090 Aethionema arabicum HOM05D004773 ORTHO05D005943 1.1e-103 380.6 285 67.4
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 1.1e-103 380.6 301 63.5
Eucgr.F01970 Eucalyptus grandis HOM05D004773 ORTHO05D005943 1.1e-103 380.6 287 66.2
TWI32G1059 Tripterygium wilfordii HOM05D004773 ORTHO05D005943 1.1e-103 380.6 304 64.5
Peaxi162Scf00527g00065 Petunia axillaris HOM05D004773 ORTHO05D005943 1.5e-103 380.2 302 63.9
CsaV3_3G010040 Cucumis sativus L. HOM05D004773 ORTHO05D005943 1.9e-103 379.8 303 63.7
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 3.3e-103 379.0 288 63.9
Nitab4.5_0003676g0020 Nicotiana tabacum HOM05D004773 ORTHO05D005943 3.3e-103 379.0 302 62.6
PGR102G2546 Punica granatum HOM05D004773 ORTHO05D005943 4.3e-103 378.6 283 66.1
Sopen02g023790 Solanum pennellii HOM05D004773 ORTHO05D005943 4.3e-103 378.6 297 63.6
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 7.3e-103 377.9 283 68.2
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 7.3e-103 377.9 282 68.4
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 7.3e-103 377.9 282 68.4
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 7.3e-103 377.9 283 68.2
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 7.3e-103 377.9 283 68.2
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 7.3e-103 377.9 296 66.2
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 9.5e-103 377.5 305 60.3
Solyc02g078980.3 Solanum lycopersicum HOM05D004773 ORTHO05D005943 1.2e-102 377.1 297 63.3
MELO3C006226.2 Cucumis melo HOM05D004773 ORTHO05D005943 1.6e-102 376.7 304 63.5
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 1.6e-102 376.7 283 67.8
Sed0007971 Sechium edule HOM05D004773 ORTHO05D005943 1.6e-102 376.7 304 63.2
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.1e-102 376.3 283 67.8
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 2.8e-102 375.9 282 63.5
DCAR_024890 Daucus carota HOM05D004773 ORTHO05D005943 3.6e-102 375.6 304 61.8
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 4.7e-102 375.2 296 65.2
PGSC0003DMG400022363 Solanum tuberosum HOM05D004773 ORTHO05D005943 4.7e-102 375.2 301 62.1
Gohir.D11G235500 Gossypium hirsutum HOM05D004773 ORTHO05D005943 2.3e-101 372.9 302 62.3
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 2.3e-101 372.9 304 61.8
Aqoxy5G04203 Aquilegia oxysepala HOM05D004773 ORTHO05D005943 4.0e-101 372.1 302 63.9
Duzib128G1941 Durio zibethinus HOM05D004773 ORTHO05D005943 4.0e-101 372.1 304 61.8
Nitab4.5_0005399g0010 Nicotiana tabacum HOM05D004773 ORTHO05D005943 4.0e-101 372.1 301 61.8
HanXRQChr12g0364651 Helianthus annuus HOM05D004773 ORTHO05D005943 6.8e-101 371.3 281 65.8
Nn2g15176 Nelumbo nucifera HOM05D004773 ORTHO05D005943 2.0e-100 369.8 305 61.0
Gorai.007G248200 Gossypium raimondii HOM05D004773 ORTHO05D005943 3.4e-100 369.0 302 60.9
MBI04_g12483_MAGBIO Magnolia biondii HOM05D004773 ORTHO05D005943 5.8e-100 368.2 305 62.6
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 5.8e-100 368.2 305 63.0
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 9.9e-100 367.5 282 67.7
CAN.G1181.18 Capsicum annuum HOM05D004773 ORTHO05D005943 2.2e-99 366.3 301 61.5
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 2.9e-99 365.9 299 62.9
Hund21271 Selenicereus undatus HOM05D004773 ORTHO05D005943 8.4e-99 364.4 302 62.3
ATR0620G003 Amborella trichopoda HOM05D004773 ORTHO05D005943 3.2e-98 362.5 281 64.4
CDE07G0301 Ceratophyllum demersum HOM05D004773 ORTHO05D005943 4.6e-97 358.6 294 61.9
ClCG05G002600 Citrullus lanatus HOM05D004773 ORTHO05D005943 6.0e-97 358.2 352 54.8
PSO063G3794 Papaver somniferum HOM05D004773 ORTHO05D005943 1.3e-96 357.1 288 63.2
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 1.7e-96 356.7 281 61.9
Os04g0577500 Oryza sativa ssp. japonica HOM05D004773 ORTHO05D005943 1.1e-95 354.0 291 60.8
ECA234G0571 Erigeron canadensis HOM05D000140 ORTHO05D000087 4.3e-95 352.1 281 62.3
Glyma.16G151100 Glycine max HOM05D004773 ORTHO05D005943 7.3e-95 351.3 272 65.1
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 1.6e-94 350.1 284 63.4
Eucgr.F01964 Eucalyptus grandis HOM05D004773 ORTHO05D005943 2.1e-94 349.7 289 60.2
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 1.1e-93 347.4 288 60.1
Cc02_g14730 Coffea canephora HOM05D004773 ORTHO05D005943 3.1e-93 345.9 284 59.9
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 2.0e-92 343.2 281 59.1
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 2.0e-92 343.2 283 59.4
arahy.Tifrunner.gnm1.ann1.KNV4WG Arachis hypogaea HOM05D004773 ORTHO05D005943 4.4e-92 342.0 307 59.9
Phvul.004G078000 Phaseolus vulgaris HOM05D004773 ORTHO05D005943 2.2e-91 339.7 274 62.0
HPP92_001439 Vanilla planifolia HOM05D004773 ORTHO05D005943 1.1e-90 337.4 288 59.0
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 2.4e-90 336.3 288 56.9
CARHR195610 Cardamine hirsuta HOM05D004773 ORTHO05D005943 9.3e-90 334.3 256 66.0
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 4.6e-89 332.0 284 57.7
Carub.0003s0264 Capsella rubella HOM05D004773 ORTHO05D005943 3.0e-88 329.3 281 56.6
SHI39094 Sapria himalayana HOM05D004773 ORTHO05D005943 3.0e-88 329.3 326 51.8
AL3G12620 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 8.7e-88 327.8 281 56.9
Gohir.D13G163600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 1.5e-87 327.0 282 56.0
Aa31LG5G14030 Aethionema arabicum HOM05D004773 ORTHO05D005943 4.3e-87 325.5 281 56.6
Gohir.A13G158600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 7.3e-87 324.7 282 55.7
A06p26410 Brassica napus HOM05D004773 ORTHO05D005943 1.1e-85 320.9 281 54.4
BNapus_Darmor_BZH_scaffold_78p00160 Brassica napus HOM05D004773 ORTHO05D005943 1.1e-85 320.9 281 54.4
AUR62012595 Chenopodium quinoa HOM05D004773 ORTHO05D005943 4.0e-85 318.9 229 68.1
BNapus_Darmor_BZH_scaffold_162p00180 Brassica napus HOM05D004773 ORTHO05D005943 6.9e-85 318.2 282 54.6
BolC1t05828H Brassica oleracea HOM05D004773 ORTHO05D005943 6.9e-85 318.2 282 54.6
Gohir.A11G222000 Gossypium hirsutum HOM05D004773 ORTHO05D005943 9.0e-85 317.8 229 66.4
BraA01t04577Z Brassica rapa HOM05D004773 ORTHO05D005943 3.4e-84 315.8 283 54.1
Gorai.013G199600 Gossypium raimondii HOM05D004773 ORTHO05D005943 9.9e-84 314.3 282 54.6
PSO063G1994 Papaver somniferum HOM05D004773 ORTHO05D005943 3.2e-82 309.3 281 55.2
AUR62014585 Chenopodium quinoa HOM05D004773 ORTHO05D005943 9.3e-82 307.8 302 57.0
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.9e-80 302.4 206 71.4
SMO367G0365 Selaginella moellendorffii HOM05D004773 ORTHO05D005943 1.5e-79 300.4 286 51.4
TPR.G6097 Trifolium pratense HOM05D004773 ORTHO05D005943 5.6e-79 298.5 315 54.9
BcaC09g47749 Brassica carinata HOM05D004773 ORTHO05D005943 3.4e-76 289.3 310 48.7
Pp3c12_11300 Physcomitrium patens HOM05D004773 ORTHO05D005943 5.8e-76 288.5 293 47.8
AagrBONN_evm.TU.Sc2ySwM_362.2127 Anthoceros agrestis HOM05D004773 ORTHO05D005943 4.9e-75 285.4 280 49.3
PSO782G1422 Papaver somniferum HOM05D004773 ORTHO05D005943 1.4e-74 283.9 182 73.6
Mapoly0004s0110 Marchantia polymorpha HOM05D004773 ORTHO05D005943 1.9e-74 283.5 306 49.3
Dinv40507 Davidia involucrata HOM05D004773 ORTHO05D005943 1.1e-71 274.2 303 52.5
CBR_g32162 Chara braunii HOM05D004773 ORTHO05D001111 7.4e-71 271.6 307 50.2
AT3G03500 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 1.4e-69 267.3 196 62.2
AUR62014597 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.2e-68 264.2 213 62.0
Thhalv10021316m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 4.6e-65 252.3 241 53.1
unitig_37.g12340 Utricularia gibba HOM05D004773 ORTHO05D005943 7.7e-52 208.4 149 63.8
COL.COLO4_31150 Corchorus olitorius HOM05D004773 ORTHO05D005943 2.1e-49 200.3 144 63.2
VMungo0464G1467 Vigna mungo HOM05D004773 ORTHO05D005943 1.1e-47 194.5 170 51.8
Sp3g02490 Schrenkiella parvula HOM05D004773 ORTHO05D005943 8.2e-46 188.3 323 39.9
VMungo0464G0773 Vigna mungo HOM05D004773 ORTHO05D005943 1.4e-40 171.0 155 62.6
RcHm_v2.0_Chr3g0466941 Rosa chinensis HOM05D004773 ORTHO05D005943 1.8e-40 170.6 139 65.5
COL.COLO4_31152 Corchorus olitorius HOM05D007715 ORTHO05D009760 1.2e-33 147.9 204 43.1
CAN.G1247.2 Capsicum annuum HOM05D004773 ORTHO05D005943 4.8e-30 136.0 228 36.4
PRCOL_00005876 Prasinoderma coloniale HOM05D004773 ORTHO05D005943 8.3e-22 108.6 230 31.7
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 1.1e-21 108.2 288 27.4
Cre17.g717200 Chlamydomonas reinhardtii HOM05D004773 ORTHO05D005943 1.1e-21 108.2 268 31.7
MCO10G115 Micromonas commoda HOM05D004773 ORTHO05D005943 9.1e-21 105.1 302 27.5
HPP92_010162 Vanilla planifolia HOM05D004773 ORTHO05D005943 3.8e-19 99.8 76 55.3
SEGI_00738 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 1.6e-17 94.4 67 67.2
AL6G10940 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 4.0e-16 89.7 71 59.2
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 8.8e-16 88.6 268 26.5
TPR.G35071 Trifolium pratense HOM05D004773 ORTHO05D005943 6.3e-14 82.4 52 71.2
PGSC0003DMG400004239 Solanum tuberosum HOM05D004773 ORTHO05D005943 1.1e-13 81.6 51 64.7
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 1.1e-10 71.6 243 30.0
SEGI_31644 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 3.6e-09 66.6 53 58.5
AL3G13200 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 6.8e-08 62.4 46 54.3
Nn2g15177 Nelumbo nucifera HOM05D004773 ORTHO05D005943 6.8e-08 62.4 60 55.0
AUR62014598 Chenopodium quinoa HOM05D004773 ORTHO05D005943 8.9e-08 62.0 53 60.4
Glyma.16G150900 Glycine max HOM05D004773 ORTHO05D005943 1.5e-07 61.2 57 50.9
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 1.7e-06 57.8 168 29.2


User provided reference genes

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