Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G2640 Cannabis sativa HOM05D006087 ORTHO05D007479 1.5e-47 192.6 100 100.0
Eucgr.B03495 Eucalyptus grandis HOM05D006087 ORTHO05D007479 6.2e-38 160.6 98 85.7
Sp2g08050 Schrenkiella parvula HOM05D006087 ORTHO05D007479 6.8e-37 157.1 98 77.6
Lj4g0011842 Lotus japonicus HOM05D006087 ORTHO05D007479 2.6e-36 155.2 98 79.6
Carub.0008s0544 Capsella rubella HOM05D006087 ORTHO05D007479 3.4e-36 154.8 98 76.5
MELO3C011864.2 Cucumis melo HOM05D006087 ORTHO05D007479 3.4e-36 154.8 99 79.8
TWI75G0102 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 7.6e-36 153.7 99 79.8
A06p47950 Brassica napus HOM05D006087 ORTHO05D007479 9.9e-36 153.3 98 75.5
C07p25860 Brassica napus HOM05D006087 ORTHO05D007479 9.9e-36 153.3 98 75.5
BolC7t43103H Brassica oleracea HOM05D006087 ORTHO05D007479 9.9e-36 153.3 98 75.5
BraA06t27665Z Brassica rapa HOM05D006087 ORTHO05D007479 9.9e-36 153.3 98 75.5
Sc04g0010140 Simmondsia chinensis HOM05D006087 ORTHO05D007479 9.9e-36 153.3 100 84.0
CiPaw.05G109600 Carya illinoinensis HOM05D006087 ORTHO05D007479 1.7e-35 152.5 100 79.0
Ciclev10033174m.g Citrus clementina HOM05D006087 ORTHO05D007479 1.7e-35 152.5 100 80.0
CsaV3_5G030260 Cucumis sativus L. HOM05D006087 ORTHO05D007479 1.7e-35 152.5 99 78.8
BcaC04g21941 Brassica carinata HOM05D006087 ORTHO05D007479 2.9e-35 151.8 98 74.5
C09p25630 Brassica napus HOM05D006087 ORTHO05D007479 2.9e-35 151.8 98 74.5
BolC9t55466H Brassica oleracea HOM05D006087 ORTHO05D007479 2.9e-35 151.8 98 74.5
A09p20220 Brassica napus HOM05D006087 ORTHO05D007479 3.8e-35 151.4 98 74.5
BraA09t37633Z Brassica rapa HOM05D006087 ORTHO05D007479 3.8e-35 151.4 98 74.5
Lalb_Chr12g0206161 Lupinus albus HOM05D006087 ORTHO05D007479 4.9e-35 151.0 100 78.0
QL03p052667 Quercus lobata HOM05D006087 ORTHO05D007479 4.9e-35 151.0 99 81.8
PGSC0003DMG400014051 Solanum tuberosum HOM05D006087 ORTHO05D007479 6.4e-35 150.6 96 81.2
FAN17G2012 Fragaria x ananassa HOM05D006087 ORTHO05D007479 1.1e-34 149.8 97 76.3
THA.LOC104812595 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 1.4e-34 149.4 100 76.0
Atru.chr11.2326 Acer truncatum HOM05D006087 ORTHO05D007479 2.4e-34 148.7 100 77.0
FAN07G1634 Fragaria x ananassa HOM05D006087 ORTHO05D007479 2.4e-34 148.7 97 75.3
FAN22G0702 Fragaria x ananassa HOM05D006087 ORTHO05D007479 2.4e-34 148.7 97 75.3
Manes.12G011100 Manihot esculenta HOM05D006087 ORTHO05D007479 2.4e-34 148.7 100 81.0
Aa31LG9G13330 Aethionema arabicum HOM05D006087 ORTHO05D007479 3.2e-34 148.3 98 78.6
AT5G43260 Arabidopsis thaliana HOM05D006087 ORTHO05D007479 3.2e-34 148.3 98 75.5
BcaB07g31021 Brassica carinata HOM05D006087 ORTHO05D007479 3.2e-34 148.3 98 72.4
FAN12G1341 Fragaria x ananassa HOM05D006087 ORTHO05D007479 3.2e-34 148.3 97 75.3
FAN12G1854 Fragaria x ananassa HOM05D006087 ORTHO05D007479 3.2e-34 148.3 97 75.3
MD16G1119600 Malus domestica HOM05D006087 ORTHO05D007479 3.2e-34 148.3 99 72.7
TWI18G0911 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 3.2e-34 148.3 99 76.8
AL8G17230 Arabidopsis lyrata HOM05D006087 ORTHO05D007479 4.2e-34 147.9 98 74.5
MD13G1119200 Malus domestica HOM05D006087 ORTHO05D007479 4.2e-34 147.9 99 76.8
RcHm_v2.0_Chr4g0430231 Rosa chinensis HOM05D006087 ORTHO05D007479 5.4e-34 147.5 97 75.3
Solyc05g015470.1 Solanum lycopersicum HOM05D006087 ORTHO05D007479 5.4e-34 147.5 96 80.2
Sopen05g010780 Solanum pennellii HOM05D006087 ORTHO05D007479 5.4e-34 147.5 96 80.2
TAR374G1631 Trochodendron aralioides HOM05D006087 ORTHO05D007479 7.1e-34 147.1 100 76.0
Oeu004448.1 Olea europaea HOM05D006087 ORTHO05D007479 9.2e-34 146.7 100 77.0
Oeu036868.1 Olea europaea HOM05D006087 ORTHO05D007479 1.2e-33 146.4 101 76.2
TWI36G1569 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 1.6e-33 146.0 97 76.3
Hma1.2p1_0065F.1_g035460 Hydrangea macrophylla HOM05D006087 ORTHO05D007479 2.1e-33 145.6 101 80.2
CARHR180610 Cardamine hirsuta HOM05D006087 ORTHO05D007479 2.7e-33 145.2 98 78.6
Actinidia20712 Actinidia chinensis HOM05D006087 ORTHO05D007479 3.5e-33 144.8 100 74.0
TAR622G0081 Trochodendron aralioides HOM05D006087 ORTHO05D007479 3.5e-33 144.8 102 75.5
Glyma.18G006400 Glycine max HOM05D006087 ORTHO05D007479 4.6e-33 144.4 98 77.6
Phvul.001G262000 Phaseolus vulgaris HOM05D006087 ORTHO05D007479 4.6e-33 144.4 100 76.0
Ah.03g136140 Amaranthus hybridus HOM05D006087 ORTHO05D007479 6.0e-33 144.1 93 76.3
Glyma.11G250700 Glycine max HOM05D006087 ORTHO05D007479 1.0e-32 143.3 98 76.5
EL10Ac6g13503 Beta vulgaris HOM05D006087 ORTHO05D007479 1.3e-32 142.9 97 72.2
Medtr3g085300 Medicago truncatula HOM05D006087 ORTHO05D007479 1.3e-32 142.9 100 75.0
CAN.G163.9 Capsicum annuum HOM05D006087 ORTHO05D007479 1.7e-32 142.5 98 75.5
Lsat_1_v5_gn_4_3481 Lactuca sativa HOM05D006087 ORTHO05D007479 2.3e-32 142.1 103 74.8
unitig_749.g13305 Utricularia gibba HOM05D006087 ORTHO05D007479 2.3e-32 142.1 98 70.4
SGA_v2.0_scaffold9G04680 Striga asiatica HOM05D006087 ORTHO05D007479 3.0e-32 141.7 102 70.6
Thecc.02G208200 Theobroma cacao HOM05D006087 ORTHO05D007479 3.0e-32 141.7 93 82.8
Cc11_g16920 Coffea canephora HOM05D006087 ORTHO05D007479 3.9e-32 141.4 91 72.5
TPR.G17782 Trifolium pratense HOM05D006087 ORTHO05D007479 5.1e-32 141.0 100 76.0
Cfa009371 Carpinus fangiana HOM05D006087 ORTHO05D007479 6.6e-32 140.6 100 78.0
COL.COLO4_20404 Corchorus olitorius HOM05D006087 ORTHO05D007479 6.6e-32 140.6 93 81.7
Haze_12421 Corylus avellana HOM05D006087 ORTHO05D007479 6.6e-32 140.6 100 78.0
CiPaw.06G102800 Carya illinoinensis HOM05D006087 ORTHO05D007479 8.7e-32 140.2 100 77.0
Duzib251G0251 Durio zibethinus HOM05D006087 ORTHO05D007479 8.7e-32 140.2 99 76.8
Psat5g096360 Pisum sativum HOM05D006087 ORTHO05D007479 1.1e-31 139.8 100 77.0
Potri.001G056601 Populus trichocarpa HOM05D006087 ORTHO05D007479 1.5e-31 139.4 100 74.0
Prupe.1G225600 Prunus persica HOM05D006087 ORTHO05D007479 2.5e-31 138.7 99 75.8
Gohir.A12G148826 Gossypium hirsutum HOM05D006087 ORTHO05D007479 7.3e-31 137.1 99 73.7
Gohir.D04G182800 Gossypium hirsutum HOM05D006087 ORTHO05D007479 7.3e-31 137.1 94 76.6
Gorai.012G175800 Gossypium raimondii HOM05D006087 ORTHO05D007479 7.3e-31 137.1 94 76.6
Migut.K00735 Erythranthe guttata HOM05D006087 ORTHO05D007479 9.6e-31 136.7 100 72.0
Gohir.D12G152800 Gossypium hirsutum HOM05D006087 ORTHO05D007479 9.6e-31 136.7 99 70.7
Gorai.008G165300 Gossypium raimondii HOM05D006087 ORTHO05D007479 9.6e-31 136.7 99 70.7
AUR62005621 Chenopodium quinoa HOM05D006087 ORTHO05D007479 1.3e-30 136.3 93 75.3
Rhsim12G0025700 Rhododendron simsii HOM05D006087 ORTHO05D007479 1.3e-30 136.3 101 74.3
Ah.02g130900 Amaranthus hybridus HOM05D006087 ORTHO05D007479 2.1e-30 135.6 93 72.0
Ca_16458_v3 Cicer arietinum L. HOM05D006087 ORTHO05D007479 2.1e-30 135.6 100 75.0
Duzib248G0070 Durio zibethinus HOM05D006087 ORTHO05D007479 2.1e-30 135.6 99 69.7
Nitab4.5_0001808g0020 Nicotiana tabacum HOM05D006087 ORTHO05D007479 2.1e-30 135.6 96 74.0
AUR62028927 Chenopodium quinoa HOM05D006087 ORTHO05D007479 3.6e-30 134.8 93 76.3
Potri.003G171800 Populus trichocarpa HOM05D006087 ORTHO05D007479 3.6e-30 134.8 98 76.5
Nitab4.5_0000039g0180 Nicotiana tabacum HOM05D006087 ORTHO05D007479 1.1e-29 133.3 96 72.9
Gohir.A04G139600 Gossypium hirsutum HOM05D006087 ORTHO05D007479 1.4e-29 132.9 94 74.5
PSO017G6027 Papaver somniferum HOM05D006087 ORTHO05D007479 1.8e-29 132.5 98 68.4
PSO478G2574 Papaver somniferum HOM05D006087 ORTHO05D007479 1.8e-29 132.5 98 68.4
ATR0561G204 Amborella trichopoda HOM05D006087 ORTHO05D007479 3.1e-29 131.7 98 72.4
ECA234G0111 Erigeron canadensis HOM05D006087 ORTHO05D007479 4.0e-29 131.3 87 72.4
HanXRQChr10g0310621 Helianthus annuus HOM05D006087 ORTHO05D007479 6.9e-29 130.6 93 69.9
THA.LOC104820522 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 1.5e-28 129.4 100 72.0
Aqoxy5G03370 Aquilegia oxysepala HOM05D006087 ORTHO05D007479 3.4e-28 128.3 94 76.6
CSS0016505 Camellia sinensis var. sinensis HOM05D006087 ORTHO05D007479 4.4e-28 127.9 85 81.2
CSS0027394 Camellia sinensis var. sinensis HOM05D006087 ORTHO05D007479 4.4e-28 127.9 85 81.2
Duzib268G0474 Durio zibethinus HOM05D006087 ORTHO05D007479 4.4e-28 127.9 94 74.5
Lalb_Chr23g0278081 Lupinus albus HOM05D006087 ORTHO05D007479 5.8e-28 127.5 100 74.0
Cpa.g.sc43.59 Carica papaya HOM05D006087 ORTHO05D007479 7.6e-28 127.1 100 74.0
CDE02G3899 Ceratophyllum demersum HOM05D006087 ORTHO05D007479 1.3e-27 126.3 98 61.2
THA.LOC104825505 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 1.3e-27 126.3 103 67.0
THA.LOC104807129 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 3.8e-27 124.8 103 66.0
MELO3C010741.2 Cucumis melo HOM05D006087 ORTHO05D007479 6.4e-27 124.0 96 64.6
arahy.Tifrunner.gnm1.ann1.1Z01XL Arachis hypogaea HOM05D006087 ORTHO05D007479 1.6e-25 119.4 102 66.7
MSTRG.8005 Avicennia marina HOM05D006087 ORTHO05D007479 2.1e-25 119.0 96 67.7
ECA233G2512 Erigeron canadensis HOM05D006443 ORTHO05D007797 2.1e-25 119.0 81 71.6
PGR102G3303 Punica granatum HOM05D006087 ORTHO05D007479 2.7e-25 118.6 98 70.4
MBI11_g44422_MAGBIO Magnolia biondii HOM05D006087 ORTHO05D007479 7.8e-25 117.1 100 71.0
Sed0007875 Sechium edule HOM05D006087 ORTHO05D007479 1.7e-24 115.9 96 62.5
Mapoly0062s0032 Marchantia polymorpha HOM05D006087 ORTHO05D007479 2.3e-24 115.5 89 64.0
Migut.E00016 Erythranthe guttata HOM05D006087 ORTHO05D007479 5.6e-23 110.9 96 59.4
ClCG08G017160 Citrullus lanatus HOM05D006087 ORTHO05D007479 1.3e-22 109.8 96 61.5
CsaV3_2G025430 Cucumis sativus L. HOM05D006087 ORTHO05D007479 2.8e-22 108.6 79 74.7
MD05G1114700 Malus domestica HOM05D006087 ORTHO05D007479 4.0e-21 104.8 81 67.9
Pp3c22_5660 Physcomitrium patens HOM05D006087 ORTHO05D007479 6.9e-21 104.0 100 54.0
Pp3c21_520 Physcomitrium patens HOM05D006087 ORTHO05D007479 2.0e-20 102.4 99 54.5
MBI11_g05327_MAGBIO Magnolia biondii HOM05D006087 ORTHO05D007479 2.6e-20 102.1 70 77.1
Pp3c18_21810 Physcomitrium patens HOM05D006087 ORTHO05D007479 3.4e-20 101.7 100 54.0
Pp3c14_11460 Physcomitrium patens HOM05D006087 ORTHO05D007479 1.3e-19 99.8 100 54.0
HPP92_024307 Vanilla planifolia HOM05D006087 ORTHO05D007479 6.4e-19 97.4 94 57.4
HPP92_024290 Vanilla planifolia HOM05D006087 ORTHO05D007479 2.4e-18 95.5 95 57.9
Pp3c17_7480 Physcomitrium patens HOM05D006087 ORTHO05D007479 2.3e-16 89.0 98 46.9
Hma1.2p1_0349F.1_g132260 Hydrangea macrophylla HOM05D006087 ORTHO05D007479 3.3e-15 85.1 100 54.0
Zm00001eb241730 Zea mays HOM05D006087 ORTHO05D007479 1.6e-14 82.8 95 47.4
Zm00001eb180950 Zea mays HOM05D006087 ORTHO05D007479 1.1e-13 80.1 100 45.0
Os02g0506600 Oryza sativa ssp. japonica HOM05D006087 ORTHO05D007479 1.8e-13 79.3 100 47.0
Zm00001eb421040 Zea mays HOM05D006087 ORTHO05D007479 1.0e-08 63.5 103 43.7
Cre10.g432100 Chlamydomonas reinhardtii HOM05D006087 ORTHO05D007479 3.0e-08 62.0 85 38.8
Oeu016235.1 Olea europaea HOM05D006087 ORTHO05D007479 2.8e-06 55.5 45 73.3
MD16G1189100 Malus domestica HOM05D006087 ORTHO05D007479 4.8e-06 54.7 42 64.3
CDE05G3495 Ceratophyllum demersum HOM05D006087 ORTHO05D007479 6.2e-06 54.3 58 56.9


User provided reference genes

Program Settings