Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G2619 Cannabis sativa HOM05D007287 ORTHO05D008965 7.1e-136 487.3 246 100.0
Thecc.04G001200 Theobroma cacao HOM05D007287 ORTHO05D008965 4.9e-36 155.6 230 40.0
Manes.08G167300 Manihot esculenta HOM05D007287 ORTHO05D008965 1.9e-35 153.7 245 40.4
Prupe.6G299000 Prunus persica HOM05D007287 ORTHO05D008965 1.6e-34 150.6 246 39.4
Ciclev10012636m.g Citrus clementina HOM05D007287 ORTHO05D008965 2.3e-33 146.7 243 40.3
RcHm_v2.0_Chr3g0459671 Rosa chinensis HOM05D007287 ORTHO05D008965 6.6e-33 145.2 247 40.5
Haze_21214 Corylus avellana HOM05D007287 ORTHO05D008965 7.3e-32 141.7 213 41.8
Manes.09G120600 Manihot esculenta HOM05D007287 ORTHO05D008965 3.6e-31 139.4 244 37.7
MD04G1179200 Malus domestica HOM05D007287 ORTHO05D008965 6.2e-31 138.7 244 36.5
TWI74G0480 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 8.1e-31 138.3 191 44.5
Cfa016991 Carpinus fangiana HOM05D007287 ORTHO05D008965 3.1e-30 136.3 214 41.6
Gohir.D02G000600 Gossypium hirsutum HOM05D007287 ORTHO05D008965 2.0e-29 133.7 208 40.4
Gorai.005G001000 Gossypium raimondii HOM05D007287 ORTHO05D008965 2.6e-29 133.3 208 40.4
PGR031G1010 Punica granatum HOM05D007287 ORTHO05D008965 1.3e-28 131.0 212 40.6
Duzib268G0768 Durio zibethinus HOM05D007287 ORTHO05D008965 1.7e-28 130.6 230 36.1
FAN09G3442 Fragaria x ananassa HOM05D007287 ORTHO05D008965 8.4e-28 128.3 200 41.0
Sabra04G0158300 Salix brachista HOM05D007287 ORTHO05D008965 8.4e-28 128.3 194 38.7
FvH4_6g09290 Fragaria vesca HOM05D007287 ORTHO05D008965 1.1e-27 127.9 214 39.7
QL07p030582 Quercus lobata HOM05D007287 ORTHO05D008965 1.9e-27 127.1 225 39.1
QL07p031465 Quercus lobata HOM05D007287 ORTHO05D008965 1.9e-27 127.1 225 39.1
Gohir.A02G000300 Gossypium hirsutum HOM05D007287 ORTHO05D008965 2.4e-27 126.7 208 38.9
Atru.chr8.50 Acer truncatum HOM05D007287 ORTHO05D008965 5.4e-27 125.6 246 37.8
Potri.016G142100 Populus trichocarpa HOM05D007287 ORTHO05D008965 2.1e-26 123.6 193 38.3
Lsat_1_v5_gn_5_153761 Lactuca sativa HOM05D007287 ORTHO05D008965 7.3e-24 115.2 224 37.1
GSVIVG01029850001 Vitis vinifera HOM05D007287 ORTHO05D008965 9.6e-24 114.8 240 35.4
Glyma.16G221800 Glycine max HOM05D007287 ORTHO05D008965 2.1e-23 113.6 190 37.9
Cpa.g.sc60.59 Carica papaya HOM05D007287 ORTHO05D008965 2.8e-23 113.2 227 36.1
Dinv16928 Davidia involucrata HOM05D007287 ORTHO05D008965 2.8e-23 113.2 232 37.5
Glyma.03G000900 Glycine max HOM05D007287 ORTHO05D008965 2.8e-23 113.2 192 39.1
Potri.006G112600 Populus trichocarpa HOM05D007287 ORTHO05D008965 2.8e-23 113.2 194 36.1
CsaV3_4G027460 Cucumis sativus L. HOM05D007287 ORTHO05D008965 6.2e-23 112.1 228 37.3
Sabra06G0087700 Salix brachista HOM05D007287 ORTHO05D008965 6.2e-23 112.1 194 36.6
ClCG04G006100 Citrullus lanatus HOM05D007287 ORTHO05D008965 1.4e-22 110.9 213 38.0
TWI77G0104 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 1.4e-22 110.9 231 34.2
Eucgr.K01309 Eucalyptus grandis HOM05D007287 ORTHO05D008965 1.8e-22 110.5 245 31.8
Lj3g0024711 Lotus japonicus HOM05D007287 ORTHO05D008965 1.5e-21 107.5 233 39.5
ECA248G0550 Erigeron canadensis HOM05D007287 ORTHO05D008965 2.6e-21 106.7 240 33.8
Nitab4.5_0002785g0030 Nicotiana tabacum HOM05D007287 ORTHO05D008965 5.8e-21 105.5 206 35.4
Peaxi162Scf00732g00008 Petunia axillaris HOM05D007287 ORTHO05D008965 3.8e-20 102.8 200 35.0
PSO339G4161 Papaver somniferum HOM05D007287 ORTHO05D008965 4.9e-20 102.4 291 30.6
FAN02G3892 Fragaria x ananassa HOM05D001484 ORTHO05D008965 6.4e-20 102.1 177 37.9
CSS0006882 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 8.4e-20 101.7 230 36.5
Actinidia20808 Actinidia chinensis HOM05D007287 ORTHO05D008965 1.1e-19 101.3 206 35.4
CSS0027605 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 1.4e-19 100.9 233 36.1
PSO384G1025 Papaver somniferum HOM05D007287 ORTHO05D008965 1.9e-19 100.5 272 32.7
Nitab4.5_0000356g0060 Nicotiana tabacum HOM05D007287 ORTHO05D008965 3.2e-19 99.8 206 33.5
VMungo0331G1821 Vigna mungo HOM05D007287 ORTHO05D008965 3.2e-19 99.8 220 35.0
AUR62006459 Chenopodium quinoa HOM05D007287 ORTHO05D008965 7.1e-19 98.6 196 35.2
Sed0017124 Sechium edule HOM05D007287 ORTHO05D008965 9.3e-19 98.2 219 34.2
MELO3C025269.2 Cucumis melo HOM05D007287 ORTHO05D008965 2.1e-18 97.1 193 35.2
Oeu039292.1 Olea europaea HOM05D007287 ORTHO05D008965 3.5e-18 96.3 210 33.3
TWI53G0571 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 1.0e-17 94.7 186 36.0
vmacro08958 Vaccinium macrocarpon HOM05D007287 ORTHO05D008965 1.3e-17 94.4 235 29.8
PGSC0003DMG400020867 Solanum tuberosum HOM05D007287 ORTHO05D008965 3.9e-17 92.8 225 32.4
Rhsim04G0120200 Rhododendron simsii HOM05D007287 ORTHO05D008965 6.7e-17 92.0 244 31.6
Phvul.010G060000 Phaseolus vulgaris HOM05D007287 ORTHO05D008965 8.7e-17 91.7 223 33.2
Sc20g0007340 Simmondsia chinensis HOM05D007287 ORTHO05D008965 1.9e-16 90.5 220 30.9
Sc20g0007530 Simmondsia chinensis HOM05D007287 ORTHO05D008965 1.9e-16 90.5 220 30.9
Ah.02g119260 Amaranthus hybridus HOM05D007287 ORTHO05D008965 3.3e-16 89.7 143 37.1
AUR62029815 Chenopodium quinoa HOM05D007287 ORTHO05D008965 7.4e-16 88.6 237 31.2
Nn5g26760 Nelumbo nucifera HOM05D007287 ORTHO05D008965 9.6e-16 88.2 229 31.9
HanXRQChr11g0345021 Helianthus annuus HOM05D007287 ORTHO05D008965 2.8e-15 86.7 148 37.2
MBI15_g22001_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 1.4e-14 84.3 196 33.2
EL10Ac6g15481 Beta vulgaris HOM05D007287 ORTHO05D008965 1.8e-14 84.0 232 31.0
Aqoxy2G01629 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 1.5e-13 80.9 172 31.4
CAN.G616.24 Capsicum annuum HOM05D007287 ORTHO05D008965 2.0e-13 80.5 190 31.6
TAR633G2304 Trochodendron aralioides HOM05D007287 ORTHO05D008965 2.0e-13 80.5 255 32.9
MSTRG.26833 Avicennia marina HOM05D007287 ORTHO05D008965 2.6e-13 80.1 227 28.2
Gohir.A05G415801 Gossypium hirsutum HOM05D007287 ORTHO05D008965 2.6e-13 80.1 208 32.7
Eucgr.A00853 Eucalyptus grandis HOM05D007287 ORTHO05D008965 4.5e-13 79.3 243 27.2
MBI15_g05588_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 7.6e-13 78.6 196 32.7
CDE07G0622 Ceratophyllum demersum HOM05D007287 ORTHO05D008965 9.9e-13 78.2 199 29.6
Sopen09g026010 Solanum pennellii HOM05D007287 ORTHO05D008965 9.9e-13 78.2 222 29.7
Solyc09g031900.4 Solanum lycopersicum HOM05D007287 ORTHO05D008965 3.8e-12 76.3 221 29.4
HPP92_015439 Vanilla planifolia HOM05D007287 ORTHO05D008965 1.4e-11 74.3 139 32.4
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 4.2e-11 72.8 220 29.1
THA.LOC104806658 Tarenaya hassleriana HOM05D009615 ORTHO05D011760 1.2e-10 71.2 136 34.6
COL.COLO4_12535 Corchorus olitorius HOM05D007287 ORTHO05D008965 2.7e-10 70.1 161 31.1
Gohir.A12G000800 Gossypium hirsutum HOM05D007287 ORTHO05D008965 2.7e-10 70.1 113 38.1
Gohir.A05G415501 Gossypium hirsutum HOM05D007287 ORTHO05D008965 3.5e-10 69.7 208 30.3
HPP92_018079 Vanilla planifolia HOM05D007287 ORTHO05D008965 3.5e-10 69.7 156 32.1
Aqoxy1G02348 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 2.3e-09 67.0 148 31.8
Os11g0119900 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 1.9e-08 63.9 247 27.9
Aqoxy1G03140 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 2.5e-08 63.5 147 31.3
VMungo1127G2237 Vigna mungo HOM05D007287 ORTHO05D008965 2.5e-08 63.5 192 29.7
CARHR121260 Cardamine hirsuta HOM05D009615 ORTHO05D011760 3.3e-08 63.2 103 38.8
Os12g0119700 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 7.4e-08 62.0 207 29.0
HanXRQChr10g0286721 Helianthus annuus HOM05D007287 ORTHO05D008965 9.6e-08 61.6 113 34.5
TPR.G30730 Trifolium pratense HOM05D007287 ORTHO05D008965 1.3e-07 61.2 218 30.7
Thhalv10017369m.g Eutrema salsugineum HOM05D009615 ORTHO05D011760 1.6e-07 60.8 79 45.6
Sp4g11120 Schrenkiella parvula HOM05D009615 ORTHO05D011760 1.6e-07 60.8 125 35.2
Carub.0004s0923 Capsella rubella HOM05D009615 ORTHO05D011760 2.8e-07 60.1 83 43.4
arahy.Tifrunner.gnm1.ann1.K8RLSB Arachis hypogaea HOM05D007287 ORTHO05D008965 8.1e-07 58.5 198 29.8
Cc06_g00120 Coffea canephora HOM05D007287 ORTHO05D008965 1.1e-06 58.2 152 30.3
AL4G21750 Arabidopsis lyrata HOM05D009615 ORTHO05D011760 1.4e-06 57.8 86 41.9
Ca_18906_v3 Cicer arietinum L. HOM05D007287 ORTHO05D008965 1.4e-06 57.8 124 36.3
AT2G28330 Arabidopsis thaliana HOM05D009615 ORTHO05D011760 1.8e-06 57.4 86 40.7
DCAR_014750 Daucus carota HOM05D007287 ORTHO05D008965 4.0e-06 56.2 259 28.2
Lalb_Chr13g0290321 Lupinus albus HOM05D007287 ORTHO05D008965 4.0e-06 56.2 154 30.5
arahy.Tifrunner.gnm1.ann1.HN5ZMV Arachis hypogaea HOM05D007287 ORTHO05D008965 5.3e-06 55.8 198 29.8
DCAR_011429 Daucus carota HOM05D054201 ORTHO05D008965 6.9e-06 55.5 215 27.9


User provided reference genes

Program Settings