Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 3.0e-128 461.8 234 100.0
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 4.3e-82 308.5 234 70.1
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 2.1e-81 306.2 234 70.1
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 1.1e-80 303.9 234 70.5
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 1.8e-80 303.1 234 70.9
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 1.5e-79 300.1 234 70.5
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 2.0e-79 299.7 230 70.0
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 2.2e-78 296.2 234 68.4
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.6e-76 290.0 229 69.0
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 3.5e-76 288.9 234 67.1
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 4.6e-76 288.5 234 67.9
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 7.9e-76 287.7 235 68.1
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.0e-75 287.3 235 66.8
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.8e-75 286.6 229 68.6
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 5.1e-75 285.0 235 66.0
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 8.7e-75 284.3 204 72.5
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 8.7e-75 284.3 204 72.5
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 8.7e-75 284.3 234 64.5
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 8.7e-75 284.3 234 65.8
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.5e-74 283.5 204 73.0
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.5e-74 282.7 235 66.8
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 6.2e-73 278.1 234 67.1
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 8.1e-73 277.7 231 65.8
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 2.4e-72 276.2 234 64.5
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 2.4e-72 276.2 234 63.2
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 1.2e-71 273.9 236 64.4
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 1.5e-71 273.5 234 64.5
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 1.5e-71 273.5 233 66.1
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 2.0e-71 273.1 214 67.8
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 4.5e-71 271.9 235 64.7
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 5.8e-71 271.6 237 62.0
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 9.9e-71 270.8 316 52.8
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 9.9e-71 270.8 237 63.3
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 3.8e-70 268.9 234 62.8
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 3.8e-70 268.9 233 64.8
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 1.4e-69 266.9 235 62.1
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 1.9e-69 266.5 236 62.3
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 5.5e-69 265.0 234 62.8
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 5.5e-69 265.0 231 61.5
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 1.2e-68 263.8 248 61.7
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 1.2e-68 263.8 231 61.9
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 1.2e-68 263.8 243 61.7
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 1.6e-68 263.5 235 63.4
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 4.6e-68 261.9 232 62.5
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 1.0e-67 260.8 242 62.4
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 1.8e-67 260.0 235 60.9
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 2.3e-67 259.6 234 62.0
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 6.7e-67 258.1 243 60.1
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 3.3e-66 255.8 197 67.0
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 3.3e-66 255.8 234 60.3
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 1.3e-65 253.8 238 59.7
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 1.3e-65 253.8 241 60.2
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 1.6e-65 253.4 250 58.4
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 1.6e-65 253.4 229 62.4
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 6.2e-65 251.5 236 61.9
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 1.1e-64 250.8 236 62.7
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 1.1e-64 250.8 235 61.7
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 1.1e-64 250.8 242 60.3
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 2.4e-64 249.6 240 58.8
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.2e-63 247.3 234 59.8
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 2.0e-63 246.5 276 52.2
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 3.8e-62 242.3 329 48.6
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 3.8e-62 242.3 233 58.4
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 4.9e-62 241.9 229 58.1
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 6.5e-62 241.5 234 59.8
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 8.4e-62 241.1 233 60.9
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 2.5e-61 239.6 228 59.2
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 4.2e-61 238.8 228 57.0
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 2.1e-60 236.5 240 57.5
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 2.7e-60 236.1 245 58.0
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 3.5e-60 235.7 224 59.4
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 1.0e-59 234.2 221 60.6
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 1.8e-59 233.4 225 59.6
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 1.8e-59 233.4 225 57.3
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 1.8e-59 233.4 225 57.3
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 3.0e-59 232.6 235 57.9
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.1e-58 230.7 220 60.0
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 1.1e-58 230.7 234 57.7
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 3.3e-58 229.2 225 56.9
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 4.3e-58 228.8 243 58.0
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 4.3e-58 228.8 225 54.7
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 5.7e-58 228.4 255 54.1
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 1.3e-57 227.3 225 57.3
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 4.8e-57 225.3 223 57.0
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 6.3e-57 224.9 233 55.4
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 6.3e-57 224.9 179 68.7
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 6.3e-57 224.9 216 56.0
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 8.2e-57 224.6 221 55.7
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 1.1e-56 224.2 225 56.9
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 3.1e-56 222.6 220 59.1
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 6.9e-56 221.5 229 55.0
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 9.0e-56 221.1 238 56.3
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 9.0e-56 221.1 210 57.6
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 1.2e-55 220.7 197 61.4
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 3.4e-55 219.2 234 54.3
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 4.5e-55 218.8 227 55.9
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 5.9e-55 218.4 294 46.6
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 5.9e-55 218.4 185 65.4
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 7.6e-55 218.0 220 57.3
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.7e-54 216.9 237 55.3
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 3.8e-54 215.7 232 54.7
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 5.0e-54 215.3 210 58.1
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 5.0e-54 215.3 234 56.4
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 2.5e-53 213.0 196 58.7
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 9.3e-53 211.1 218 57.8
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 9.3e-53 211.1 148 75.7
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 4.6e-52 208.8 242 53.3
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 6.1e-52 208.4 225 56.0
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 7.9e-52 208.0 193 60.1
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 1.0e-51 207.6 234 53.8
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.0e-51 207.6 221 56.6
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 1.3e-51 207.2 239 53.1
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 8.7e-51 204.5 228 54.4
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 5.7e-50 201.8 253 51.8
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 7.4e-50 201.4 168 64.3
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 1.3e-49 200.7 214 53.7
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 3.7e-49 199.1 237 51.5
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 4.8e-49 198.7 205 56.1
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 6.3e-49 198.4 213 54.5
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 3.1e-48 196.1 236 53.0
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 4.1e-48 195.7 187 59.4
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 6.9e-48 194.9 226 54.0
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 2.0e-47 193.4 214 53.3
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 4.5e-47 192.2 214 52.8
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 4.5e-47 192.2 214 52.8
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 4.5e-47 192.2 209 53.6
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 1.3e-46 190.7 223 50.2
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 2.2e-46 189.9 221 51.6
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 3.8e-46 189.1 233 51.9
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 4.2e-45 185.7 203 53.2
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 1.2e-44 184.1 177 57.1
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 2.7e-44 183.0 224 52.2
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 3.6e-44 182.6 209 52.2
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 3.6e-44 182.6 232 49.6
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 3.9e-43 179.1 242 47.9
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 8.8e-43 177.9 231 48.5
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 4.4e-42 175.6 136 68.4
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 7.4e-42 174.9 202 52.0
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 7.4e-42 174.9 222 50.9
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 3.7e-41 172.6 235 43.4
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 1.4e-40 170.6 246 43.9
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 1.8e-40 170.2 182 53.3
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 6.9e-40 168.3 203 51.7
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 9.1e-40 167.9 196 52.0
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 1.7e-38 163.7 132 64.4
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 6.5e-38 161.8 128 65.6
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 7.2e-37 158.3 102 72.5
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 1.6e-36 157.1 195 50.8
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 1.0e-35 154.5 155 58.7
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 1.4e-35 154.1 122 59.0
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 2.6e-34 149.8 102 70.6
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 2.4e-32 143.3 128 64.1
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 4.5e-31 139.0 88 77.3
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 4.5e-31 139.0 88 77.3
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 5.0e-30 135.6 165 49.1
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 1.2e-28 131.0 243 40.7
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 4.4e-26 122.5 131 55.0
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 9.7e-26 121.3 81 71.6
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 1.3e-25 120.9 139 48.9
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 2.9e-22 109.8 74 75.7
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 1.5e-18 97.4 89 60.7
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 2.0e-18 97.1 229 35.4
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 1.8e-16 90.5 88 48.9
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 8.8e-11 71.6 80 48.8
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 4.4e-10 69.3 93 40.9
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 1.7e-09 67.4 40 75.0
QL09p050907 Quercus lobata HOM05D004056 ORTHO05D004894 6.3e-09 65.5 97 46.4
HanXRQChr12g0358981 Helianthus annuus HOM05D004056 ORTHO05D004894 1.7e-06 57.4 43 60.5


User provided reference genes

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