Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 3.3e-110 401.7 208 100.0
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 1.7e-74 283.1 206 74.8
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 3.2e-73 278.9 207 72.5
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 4.2e-73 278.5 206 71.8
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 4.7e-72 275.0 206 72.8
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 4.7e-72 275.0 201 74.1
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 3.0e-71 272.3 209 71.3
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 8.8e-71 270.8 207 72.0
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 8.8e-71 270.8 206 70.4
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 1.2e-70 270.4 206 73.8
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 1.2e-70 270.4 206 73.8
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 2.0e-70 269.6 206 71.4
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 4.4e-70 268.5 206 73.3
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 9.8e-70 267.3 206 71.8
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 2.2e-69 266.2 206 71.4
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 2.8e-69 265.8 206 71.4
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 2.8e-69 265.8 206 70.9
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 3.7e-69 265.4 206 70.4
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 6.3e-69 264.6 207 70.5
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 6.3e-69 264.6 206 72.8
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 8.3e-69 264.2 206 70.9
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 8.3e-69 264.2 207 70.5
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 4.1e-68 261.9 206 68.9
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 4.1e-68 261.9 207 70.5
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 4.1e-68 261.9 206 69.9
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 4.1e-68 261.9 206 69.9
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 7.0e-68 261.2 206 69.4
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 9.1e-68 260.8 209 69.4
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 1.2e-67 260.4 206 72.8
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 1.6e-67 260.0 208 69.2
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 1.6e-67 260.0 206 70.9
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 2.7e-67 259.2 206 66.5
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 3.5e-67 258.8 206 68.9
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 3.5e-67 258.8 206 69.9
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 4.5e-67 258.5 206 68.9
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 1.0e-66 257.3 206 68.4
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 1.3e-66 256.9 209 68.9
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 1.7e-66 256.5 209 68.9
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 1.7e-66 256.5 210 69.0
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 1.7e-66 256.5 210 69.0
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 2.9e-66 255.8 207 71.5
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 2.9e-66 255.8 211 68.7
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 5.0e-66 255.0 210 67.1
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 5.0e-66 255.0 207 70.0
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 1.1e-65 253.8 206 69.4
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 2.5e-65 252.7 206 67.5
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 9.5e-65 250.8 183 73.8
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 9.5e-65 250.8 183 73.8
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 9.5e-65 250.8 206 66.0
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 1.6e-64 250.0 206 65.0
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 1.6e-64 250.0 227 63.9
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 2.8e-64 249.2 209 67.9
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 6.1e-64 248.1 192 68.2
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 8.0e-64 247.7 206 67.0
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.0e-63 247.3 239 60.7
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 5.2e-63 245.0 153 81.0
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 6.8e-63 244.6 211 66.4
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 6.8e-63 244.6 206 66.5
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 1.2e-62 243.8 215 63.7
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 2.6e-62 242.7 216 64.8
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 5.7e-62 241.5 153 79.1
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 1.7e-61 240.0 212 65.6
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 2.2e-61 239.6 211 64.5
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 2.8e-61 239.2 183 69.4
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 2.8e-61 239.2 149 82.6
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 3.7e-61 238.8 153 78.4
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 4.9e-61 238.4 153 76.5
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 4.9e-61 238.4 153 75.8
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 6.3e-61 238.0 151 80.1
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 8.3e-61 237.7 183 67.8
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 1.1e-60 237.3 252 57.5
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 1.8e-60 236.5 173 70.5
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 7.0e-60 234.6 153 77.1
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 9.2e-60 234.2 155 78.7
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 9.2e-60 234.2 206 63.6
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 1.2e-59 233.8 193 65.8
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 2.0e-59 233.0 190 65.8
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 2.0e-59 233.0 219 61.2
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 4.5e-59 231.9 215 63.7
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 5.9e-59 231.5 216 62.5
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 1.0e-58 230.7 170 70.6
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 1.0e-58 230.7 198 64.1
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 1.7e-58 229.9 191 64.9
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 2.3e-58 229.6 153 75.2
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 2.9e-58 229.2 153 75.8
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 3.8e-58 228.8 174 69.5
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 5.0e-58 228.4 156 75.6
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 8.6e-58 227.6 175 69.7
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 8.6e-58 227.6 175 69.7
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 8.6e-58 227.6 153 75.2
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 1.1e-57 227.3 146 78.1
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 1.1e-57 227.3 153 74.5
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 1.9e-57 226.5 183 64.5
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 1.9e-57 226.5 215 60.0
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 1.9e-57 226.5 151 76.2
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 2.5e-57 226.1 192 64.1
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 4.3e-57 225.3 153 74.5
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 4.3e-57 225.3 153 74.5
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 4.3e-57 225.3 209 60.8
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 4.3e-57 225.3 206 64.1
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 5.6e-57 224.9 147 78.2
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 9.5e-57 224.2 180 65.6
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 2.1e-56 223.0 146 76.7
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 4.7e-56 221.9 145 76.6
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 6.1e-56 221.5 245 56.7
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 6.1e-56 221.5 153 76.5
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 8.0e-56 221.1 157 76.4
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 1.8e-55 219.9 196 60.7
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 4.0e-55 218.8 160 71.2
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 4.0e-55 218.8 206 60.7
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 5.2e-55 218.4 153 74.5
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 1.5e-54 216.9 155 69.7
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 1.5e-54 216.9 210 60.0
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 3.4e-54 215.7 153 74.5
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 3.4e-54 215.7 208 64.4
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 3.4e-54 215.7 208 64.4
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 3.4e-54 215.7 208 64.4
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 7.5e-54 214.5 194 59.3
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 1.7e-53 213.4 206 58.7
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 2.9e-53 212.6 208 63.5
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 2.9e-53 212.6 145 75.9
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 4.9e-53 211.8 167 69.5
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 2.4e-52 209.5 141 77.3
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 5.4e-52 208.4 130 80.8
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 2.7e-51 206.1 185 61.6
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 1.7e-50 203.4 196 59.7
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 1.7e-50 203.4 224 59.4
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 1.7e-50 203.4 224 59.4
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 8.6e-50 201.1 155 72.9
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 1.1e-49 200.7 220 53.6
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 4.3e-49 198.7 188 62.8
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 7.3e-49 198.0 128 78.9
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 2.1e-48 196.4 205 54.1
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 8.0e-48 194.5 198 53.5
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 1.1e-47 194.1 224 57.6
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 6.8e-47 191.4 128 78.1
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 6.8e-47 191.4 151 64.2
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 2.0e-46 189.9 157 61.1
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 4.4e-46 188.7 228 53.5
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 2.9e-45 186.0 159 66.0
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 1.4e-44 183.7 193 55.4
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 6.6e-42 174.9 145 67.6
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 7.3e-41 171.4 153 62.7
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 9.5e-41 171.0 154 57.8
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 2.8e-40 169.5 113 76.1
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 2.3e-39 166.4 178 56.7
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 3.7e-37 159.1 96 80.2
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 5.4e-36 155.2 163 57.1
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 1.2e-32 144.1 82 85.4
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 1.4e-31 140.6 97 74.2
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 2.4e-31 139.8 94 76.6
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 8.4e-29 131.3 112 62.5
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 5.4e-28 128.6 198 47.5
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 1.2e-27 127.5 135 55.6
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 4.4e-22 109.0 103 52.4
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 1.6e-19 100.5 145 37.9
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 1.3e-18 97.4 170 34.7
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 3.9e-18 95.9 63 76.2
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 1.3e-13 80.9 81 55.6
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 1.4e-12 77.4 68 61.8
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 1.3e-10 70.9 183 29.5
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 2.1e-08 63.5 76 50.0
ECA233G4675 Erigeron canadensis HOM05D004280 ORTHO05D003273 1.2e-06 57.8 32 78.1
Sopen04g030300 Solanum pennellii HOM05D004280 ORTHO05D005059 7.6e-06 55.1 87 43.7


User provided reference genes

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