Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 1.8e-276 955.3 480 100.0
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 8.5e-226 786.9 481 81.1
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 1.4e-225 786.2 481 79.4
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 2.5e-225 785.4 481 81.3
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 4.2e-225 784.6 481 80.2
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 7.2e-225 783.9 481 79.8
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 2.3e-223 778.9 481 80.9
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 1.1e-220 770.0 480 78.8
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 1.1e-220 770.0 480 78.8
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 9.1e-220 766.9 508 75.4
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 4.5e-219 764.6 481 76.3
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 5.9e-219 764.2 490 76.9
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 1.7e-218 762.7 481 77.3
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.1e-217 760.0 481 77.5
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 1.9e-217 759.2 480 79.0
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 9.4e-217 756.9 481 79.0
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 2.1e-216 755.7 484 76.0
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 1.8e-215 752.7 480 77.9
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 2.0e-214 749.2 480 77.9
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 4.4e-214 748.0 481 75.9
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 1.3e-213 746.5 482 74.3
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 1.7e-213 746.1 481 75.7
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 3.7e-213 745.0 481 75.5
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 3.7e-213 745.0 481 75.1
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 4.8e-213 744.6 481 75.5
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 1.1e-212 743.4 481 75.3
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 1.8e-212 742.7 481 75.7
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 2.4e-212 742.3 485 75.5
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 2.4e-212 742.3 483 74.9
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 3.1e-212 741.9 481 74.0
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 9.1e-212 740.3 481 75.1
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 2.6e-211 738.8 481 74.8
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 5.9e-211 737.6 481 75.1
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 1.3e-210 736.5 497 73.6
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.3e-210 736.5 484 76.0
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 1.7e-210 736.1 485 74.8
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 2.2e-210 735.7 480 73.3
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 2.2e-210 735.7 481 74.6
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 3.8e-210 734.9 481 73.8
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 5.0e-210 734.6 484 76.0
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 5.0e-210 734.6 485 73.8
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 1.9e-209 732.6 482 73.4
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 5.5e-209 731.1 481 73.6
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 1.2e-208 729.9 481 72.8
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 1.2e-208 729.9 481 75.1
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 4.7e-208 728.0 484 75.6
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 6.1e-208 727.6 481 73.0
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 2.3e-207 725.7 481 73.0
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 6.7e-207 724.2 481 73.4
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 1.5e-206 723.0 481 72.8
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 9.7e-206 720.3 482 74.3
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 3.7e-205 718.4 483 70.8
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 8.2e-205 717.2 481 73.0
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 8.2e-205 717.2 481 72.6
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 8.2e-205 717.2 482 72.8
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 5.3e-204 714.5 477 73.6
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 5.3e-204 714.5 518 69.9
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 4.5e-203 711.4 480 71.2
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 4.5e-203 711.4 481 73.2
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 5.9e-203 711.1 482 71.8
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 1.7e-202 709.5 481 71.3
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 3.8e-202 708.4 482 71.2
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 3.8e-202 708.4 482 73.0
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 5.0e-202 708.0 481 70.9
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 1.9e-201 706.1 482 72.8
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 2.5e-201 705.7 482 71.2
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 2.5e-201 705.7 481 71.1
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 3.2e-201 705.3 498 70.9
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 9.4e-201 703.7 481 73.4
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 4.7e-200 701.4 501 69.1
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 6.1e-200 701.0 415 80.7
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 6.1e-200 701.0 483 71.4
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 1.0e-199 700.3 482 70.3
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 1.8e-199 699.5 481 70.7
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 5.2e-199 698.0 482 70.5
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 6.8e-199 697.6 481 70.1
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 1.2e-198 696.8 482 70.1
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 1.5e-198 696.4 507 67.7
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 3.4e-198 695.3 487 71.7
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 3.4e-198 695.3 452 74.6
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 9.7e-198 693.7 481 70.7
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 1.1e-196 690.3 455 73.4
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 1.8e-196 689.5 482 70.1
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 5.3e-196 688.0 481 71.1
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 9.1e-196 687.2 482 69.9
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 9.1e-196 687.2 482 69.9
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 2.0e-195 686.0 482 69.3
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 2.7e-195 685.6 570 62.1
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 7.7e-195 684.1 482 69.3
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 1.7e-194 682.9 483 70.6
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 2.2e-194 682.6 482 68.3
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 2.2e-194 682.6 486 70.4
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 2.5e-193 679.1 483 68.1
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 1.0e-191 673.7 506 66.2
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 1.5e-190 669.8 481 67.4
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 6.3e-189 664.5 481 67.4
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 1.1e-188 663.7 481 68.0
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 1.4e-188 663.3 431 73.8
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 2.4e-188 662.5 486 66.5
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 2.7e-187 659.1 465 71.0
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 5.5e-185 651.4 500 64.4
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 9.5e-185 650.6 430 74.2
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 9.5e-185 650.6 518 64.5
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 5.7e-182 641.3 480 64.4
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 1.4e-180 636.7 480 64.0
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 2.0e-179 632.9 483 66.5
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 2.7e-179 632.5 480 64.2
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 4.5e-179 631.7 415 74.5
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 8.9e-175 617.5 424 73.6
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 3.7e-173 612.1 481 63.4
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 3.3e-169 599.0 559 58.5
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 2.9e-165 585.9 490 57.6
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 1.2e-163 580.5 481 59.5
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 6.6e-162 574.7 474 56.1
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 1.9e-156 556.6 489 55.6
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 3.5e-155 552.4 412 67.0
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 1.7e-146 523.5 497 57.1
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 3.9e-146 522.3 358 72.6
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 4.8e-144 515.4 481 57.6
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 5.3e-103 379.0 253 68.4
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 2.2e-96 357.1 599 37.4
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 3.5e-94 349.7 522 41.4
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 7.2e-92 342.0 260 65.8
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 4.5e-86 322.8 182 78.0
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 1.2e-81 308.1 215 72.1
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 2.0e-78 297.4 221 62.0
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 4.7e-75 286.2 383 45.4
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 8.8e-74 282.0 249 55.8
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 2.2e-72 277.3 544 34.0
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 7.3e-68 262.3 184 77.7
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.0e-66 258.5 175 67.4
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 1.2e-62 245.0 266 50.0
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 2.0e-54 217.6 429 36.4
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 7.8e-54 215.7 480 33.3
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 2.8e-51 207.2 171 62.0
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 4.0e-42 176.8 385 33.5
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 5.2e-42 176.4 212 50.0
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 8.4e-40 169.1 492 27.8
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 7.1e-39 166.0 453 26.9
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 1.2e-33 148.7 220 41.8
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 4.3e-20 103.6 184 43.5
MELO3C000413.2 Cucumis melo HOM05D004987 ORTHO05D005960 2.2e-16 91.3 67 74.6
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 4.2e-15 87.0 134 35.8
TPR.G35318 Trifolium pratense HOM05D004987 ORTHO05D005960 2.1e-14 84.7 67 68.7
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 7.9e-14 82.8 67 65.7
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 2.3e-13 81.3 107 46.7
arahy.Tifrunner.gnm1.ann1.N1GFR4 Arachis hypogaea HOM05D004987 ORTHO05D005960 6.2e-11 73.2 66 57.6
PSO832G0476 Papaver somniferum HOM05D000145 ORTHO05D001435 9.0e-10 69.3 68 58.8
PSO339G0319 Papaver somniferum HOM05D004987 ORTHO05D005960 3.4e-09 67.4 69 56.5
arahy.Tifrunner.gnm1.ann1.028TPL Arachis hypogaea HOM05D004987 ORTHO05D005960 2.5e-07 61.2 70 52.9
AagrBONN_evm.TU.Sc2ySwM_368.1144 Anthoceros agrestis HOM05D004987 ORTHO05D005960 3.5e-06 57.4 83 44.6


User provided reference genes

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