Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 1.3e-226 789.6 466 100.0
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 4.1e-116 422.5 484 59.1
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 3.2e-113 412.9 466 57.5
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 7.2e-113 411.8 463 56.2
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 9.4e-113 411.4 349 71.1
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 2.1e-112 410.2 406 63.8
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 1.8e-111 407.1 473 57.9
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 8.8e-111 404.8 490 55.5
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 8.8e-111 404.8 468 56.0
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 3.3e-110 402.9 487 53.8
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 7.4e-110 401.7 458 57.9
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 1.7e-109 400.6 514 54.3
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 8.2e-109 398.3 488 56.1
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 4.1e-108 396.0 336 67.0
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 9.1e-108 394.8 245 79.6
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 1.2e-107 394.4 282 75.9
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 3.5e-107 392.9 336 67.6
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 5.9e-107 392.1 253 76.7
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 7.7e-107 391.7 245 78.8
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 1.0e-106 391.3 497 55.1
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 1.0e-106 391.3 484 53.5
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 1.7e-106 390.6 266 75.2
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 1.7e-106 390.6 266 75.2
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 1.7e-106 390.6 470 56.0
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 1.7e-106 390.6 466 55.2
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 2.2e-106 390.2 248 77.0
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 2.9e-106 389.8 482 54.6
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 3.8e-106 389.4 245 80.8
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 5.0e-106 389.0 470 57.0
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 5.0e-106 389.0 472 53.4
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 6.5e-106 388.7 357 66.7
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 6.5e-106 388.7 255 76.5
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 2.5e-105 386.7 243 81.5
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 4.2e-105 386.0 286 70.3
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 4.2e-105 386.0 517 51.6
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 7.2e-105 385.2 379 60.4
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 2.1e-104 383.6 467 53.1
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 3.6e-104 382.9 493 57.0
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 4.7e-104 382.5 467 58.2
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 4.7e-104 382.5 238 81.5
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 2.3e-103 380.2 493 56.6
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 6.7e-103 378.6 245 77.6
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 2.6e-102 376.7 256 74.2
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 4.4e-102 375.9 256 74.2
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 4.4e-102 375.9 493 56.4
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 5.7e-102 375.6 366 60.4
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 9.7e-102 374.8 246 75.6
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 9.7e-102 374.8 246 75.6
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 9.7e-102 374.8 464 54.1
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.8e-101 373.2 368 63.0
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 3.7e-101 372.9 363 62.0
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 6.3e-101 372.1 465 54.4
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 8.2e-101 371.7 269 73.2
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 1.4e-100 370.9 366 60.1
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 2.4e-100 370.2 483 54.7
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 2.4e-100 370.2 460 54.8
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 4.1e-100 369.4 463 54.6
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 5.3e-100 369.0 487 50.5
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 5.3e-100 369.0 470 51.3
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 7.0e-100 368.6 280 71.4
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 9.1e-100 368.2 369 61.5
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 1.2e-99 367.9 245 75.9
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 3.5e-99 366.3 483 54.9
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 1.7e-98 364.0 379 59.1
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 1.7e-98 364.0 491 53.8
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 1.9e-97 360.5 476 53.4
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 2.5e-97 360.1 318 65.1
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 2.5e-97 360.1 474 51.9
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 1.6e-96 357.5 380 58.4
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 1.6e-96 357.5 320 62.8
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 2.1e-96 357.1 472 51.1
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 4.7e-96 355.9 478 52.3
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 4.7e-96 355.9 384 56.5
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 6.1e-96 355.5 260 71.5
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 6.1e-96 355.5 497 49.5
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 1.0e-95 354.8 364 60.4
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 1.0e-95 354.8 336 60.4
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 1.8e-95 354.0 372 56.2
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 1.2e-94 351.3 390 59.2
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 1.3e-93 347.8 417 54.7
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 6.3e-93 345.5 230 75.2
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 8.3e-93 345.1 250 68.8
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 1.1e-92 344.7 243 70.8
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 1.2e-91 341.3 481 51.1
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.2e-91 341.3 461 49.0
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 2.0e-91 340.5 377 56.5
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 4.5e-91 339.3 461 48.8
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 7.7e-91 338.6 464 50.0
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 3.8e-90 336.3 461 48.6
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 3.8e-90 336.3 347 56.5
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 5.0e-90 335.9 363 55.1
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 1.5e-89 334.3 379 55.7
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 2.5e-89 333.6 509 49.3
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 4.2e-89 332.8 502 48.6
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 7.2e-89 332.0 322 57.8
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 1.6e-88 330.9 336 58.0
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 2.7e-88 330.1 305 59.7
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 8.0e-88 328.6 357 55.7
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 3.0e-87 326.6 388 56.4
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 3.0e-87 326.6 353 55.0
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 1.5e-86 324.3 471 48.0
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 2.6e-86 323.6 355 56.1
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 3.4e-86 323.2 390 54.1
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 2.2e-85 320.5 501 45.1
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 2.8e-85 320.1 335 58.5
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 6.3e-85 318.9 365 53.2
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 1.8e-84 317.4 353 57.2
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 9.2e-84 315.1 348 54.3
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 5.9e-83 312.4 371 52.6
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 3.8e-82 309.7 348 53.4
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 8.6e-82 308.5 337 54.3
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 3.3e-81 306.6 486 45.3
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 2.3e-79 300.4 213 71.4
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 2.6e-78 297.0 343 52.2
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 1.7e-77 294.3 289 58.1
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 1.0e-74 285.0 496 48.6
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 1.4e-71 274.6 255 55.7
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 2.7e-67 260.4 285 50.9
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 8.1e-56 222.2 302 43.7
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 6.6e-50 202.6 249 47.0
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 1.1e-49 201.8 248 47.6
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 1.2e-48 198.4 252 40.1
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 1.1e-44 185.3 112 81.2
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 1.6e-43 181.4 229 40.2
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 6.2e-40 169.5 247 41.7
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 8.1e-40 169.1 244 38.1
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 2.0e-38 164.5 338 36.1
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 4.4e-38 163.3 89 84.3
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 8.7e-34 149.1 224 43.8
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 2.5e-33 147.5 234 35.0
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 2.8e-32 144.1 227 40.1
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 7.6e-30 136.0 252 33.3
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 1.1e-28 132.1 215 31.6
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 1.9e-28 131.3 239 33.5
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 2.4e-28 131.0 245 32.2
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 1.1e-25 122.1 311 42.8
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 9.6e-25 119.0 176 42.6
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 1.3e-24 118.6 220 36.4
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 1.3e-21 108.6 285 37.5
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 4.3e-17 93.6 243 33.7
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 5.3e-15 86.7 131 41.2
Zm00001eb008600 Zea mays HOM05D004657 ORTHO05D005562 1.5e-14 85.1 243 29.6
Sed0008262 Sechium edule HOM05D004657 ORTHO05D005562 2.6e-14 84.3 175 43.4
Zm00001eb342170 Zea mays HOM05D004657 ORTHO05D005562 1.0e-13 82.4 105 45.7
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 6.5e-13 79.7 105 47.6
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 3.2e-12 77.4 177 33.9
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 7.2e-12 76.3 108 42.6
Zm00001eb332070 Zea mays HOM05D004657 ORTHO05D005562 6.7e-10 69.7 54 51.9
Oeu002176.1 Olea europaea HOM05D004657 ORTHO05D005562 1.5e-09 68.6 42 61.9
Zm00001eb310250 Zea mays HOM05D004657 ORTHO05D005562 1.8e-07 61.6 162 30.9
Zm00001eb394500 Zea mays HOM05D002775 ORTHO05D005562 5.3e-07 60.1 54 50.0
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 1.2e-06 58.9 288 25.0


User provided reference genes

Program Settings