Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G2370 Cannabis sativa HOM05D004487 ORTHO05D005483 7.5e-130 467.2 241 100.0
MD01G1016500 Malus domestica HOM05D004487 ORTHO05D005483 1.3e-81 307.0 241 68.5
GSVIVG01022203001 Vitis vinifera HOM05D004487 ORTHO05D005483 6.6e-78 294.7 241 66.0
MD15G1334800 Malus domestica HOM05D004487 ORTHO05D005483 8.6e-78 294.3 241 65.6
QL06p033465 Quercus lobata HOM05D004487 ORTHO05D005483 3.6e-76 288.9 241 67.2
Prupe.8G078400 Prunus persica HOM05D004487 ORTHO05D005483 4.0e-75 285.4 224 68.8
Prupe.6G176600 Prunus persica HOM05D004487 ORTHO05D005483 3.4e-74 282.3 241 66.0
Thecc.01G110300 Theobroma cacao HOM05D004487 ORTHO05D005483 7.6e-74 281.2 243 62.1
Haze_05964 Corylus avellana HOM05D004487 ORTHO05D005483 1.3e-73 280.4 270 61.5
CiPaw.04G093900 Carya illinoinensis HOM05D004487 ORTHO05D005483 4.9e-73 278.5 243 66.3
Manes.12G140400 Manihot esculenta HOM05D004487 ORTHO05D005483 3.2e-72 275.8 244 65.2
Gorai.007G062000 Gossypium raimondii HOM05D004487 ORTHO05D005483 7.8e-71 271.2 243 60.1
COL.COLO4_11036 Corchorus olitorius HOM05D004487 ORTHO05D005483 8.7e-70 267.7 243 60.9
Gohir.A11G053300 Gossypium hirsutum HOM05D004487 ORTHO05D005483 1.9e-69 266.5 243 59.3
Gohir.D11G056800 Gossypium hirsutum HOM05D004487 ORTHO05D005483 2.5e-69 266.2 243 59.3
Duzib147G1438 Durio zibethinus HOM05D004487 ORTHO05D005483 4.3e-69 265.4 243 60.5
TAR625G1215 Trochodendron aralioides HOM05D004487 ORTHO05D005483 4.3e-69 265.4 243 61.3
TWI74G0090 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 3.6e-68 262.3 243 59.3
CsaV3_6G045820 Cucumis sativus L. HOM05D004487 ORTHO05D005483 6.2e-68 261.5 243 60.1
CSS0025780 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 2.4e-67 259.6 243 61.7
MELO3C007790.2 Cucumis melo HOM05D004487 ORTHO05D005483 3.1e-67 259.2 244 60.7
ClCG01G019130 Citrullus lanatus HOM05D004487 ORTHO05D005483 9.0e-67 257.7 237 60.8
Nn8g40276 Nelumbo nucifera HOM05D004487 ORTHO05D005483 1.2e-66 257.3 251 59.4
Migut.H01422 Erythranthe guttata HOM05D004487 ORTHO05D005483 1.5e-66 256.9 243 58.8
CsaV3_5G036000 Cucumis sativus L. HOM05D004487 ORTHO05D005483 2.0e-66 256.5 248 59.3
RcHm_v2.0_Chr2g0115971 Rosa chinensis HOM05D004487 ORTHO05D005483 4.4e-66 255.4 241 58.5
MSTRG.14740 Avicennia marina HOM05D004487 ORTHO05D005483 5.8e-66 255.0 243 58.8
FvH4_1g21950 Fragaria vesca HOM05D004487 ORTHO05D005483 1.7e-65 253.4 241 57.7
Nitab4.5_0007717g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.7e-65 253.4 241 60.2
Nn2g14563 Nelumbo nucifera HOM05D004487 ORTHO05D005483 2.2e-65 253.1 247 60.7
Atru.chr3.204 Acer truncatum HOM05D004487 ORTHO05D005483 2.9e-65 252.7 208 66.3
CAN.G861.28 Capsicum annuum HOM05D004487 ORTHO05D005483 6.4e-65 251.5 228 61.4
Nitab4.5_0001495g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 6.4e-65 251.5 241 59.3
PGSC0003DMG400015213 Solanum tuberosum HOM05D004487 ORTHO05D005483 1.1e-64 250.8 232 60.3
Oeu040918.3 Olea europaea HOM05D004487 ORTHO05D005483 1.9e-64 250.0 294 51.0
FAN19G1427 Fragaria x ananassa HOM05D004487 ORTHO05D005483 4.2e-64 248.8 236 57.2
FAN23G0375 Fragaria x ananassa HOM05D004487 ORTHO05D005483 4.2e-64 248.8 236 57.2
Sopen03g029710 Solanum pennellii HOM05D004487 ORTHO05D005483 5.4e-64 248.4 232 60.3
Ciclev10026392m.g Citrus clementina HOM05D004487 ORTHO05D005483 9.3e-64 247.7 229 58.5
FvH4_1g25670 Fragaria vesca HOM05D004487 ORTHO05D005483 9.3e-64 247.7 241 57.3
Potri.007G085100 Populus trichocarpa HOM05D004487 ORTHO05D005483 9.3e-64 247.7 244 62.7
Rhsim05G0180000 Rhododendron simsii HOM05D004487 ORTHO05D005483 9.3e-64 247.7 237 57.8
Lalb_Chr11g0075201 Lupinus albus HOM05D004487 ORTHO05D005483 1.6e-63 246.9 245 58.0
vmacro21317 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 1.6e-63 246.9 241 59.3
PGR004G1100 Punica granatum HOM05D004487 ORTHO05D005483 6.0e-63 245.0 240 56.7
Solyc03g019910.3 Solanum lycopersicum HOM05D004487 ORTHO05D005483 7.9e-63 244.6 232 59.9
Eucgr.I00528 Eucalyptus grandis HOM05D004487 ORTHO05D005483 1.3e-62 243.8 252 55.6
vmacro18624 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 1.3e-62 243.8 244 58.6
FAN28G1272 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.3e-62 243.0 207 60.4
FAN28G1914 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.3e-62 243.0 207 60.4
FAN26G2580 Fragaria x ananassa HOM05D004487 ORTHO05D005483 3.0e-62 242.7 236 55.9
Peaxi162Scf00171g00006 Petunia axillaris HOM05D004487 ORTHO05D005483 3.0e-62 242.7 242 57.4
FAN19G3081 Fragaria x ananassa HOM05D004487 ORTHO05D005483 8.7e-62 241.1 240 55.8
Sabra07G0070400 Salix brachista HOM05D004487 ORTHO05D005483 1.3e-60 237.3 244 60.2
Ca_23004_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 1.4e-59 233.8 247 55.9
Lj3g0008934 Lotus japonicus HOM05D004487 ORTHO05D005483 1.4e-59 233.8 245 54.7
MELO3C012399.2 Cucumis melo HOM05D004487 ORTHO05D005483 1.2e-58 230.7 264 53.8
MBI04_g31212_MAGBIO Magnolia biondii HOM05D004487 ORTHO05D005483 1.2e-58 230.7 226 56.6
ClCG05G021300 Citrullus lanatus HOM05D004487 ORTHO05D005483 3.4e-58 229.2 243 55.6
Cc02_g15410 Coffea canephora HOM05D004487 ORTHO05D005483 3.4e-58 229.2 244 55.3
Nitab4.5_0000477g0120 Nicotiana tabacum HOM05D004487 ORTHO05D005483 4.5e-58 228.8 239 56.1
TAR626G1474 Trochodendron aralioides HOM05D004487 ORTHO05D005483 1.9e-56 223.4 241 56.0
arahy.Tifrunner.gnm1.ann1.0Q3DRY Arachis hypogaea HOM05D004487 ORTHO05D005483 3.2e-56 222.6 225 54.2
Glyma.15G199500 Glycine max HOM05D004487 ORTHO05D005483 3.2e-56 222.6 218 57.3
Lj2A942G27 Lonicera japonica HOM05D004487 ORTHO05D005483 4.2e-56 222.2 280 53.6
Phvul.009G211400 Phaseolus vulgaris HOM05D004487 ORTHO05D005483 7.1e-56 221.5 241 53.1
HanXRQChr14g0458831 Helianthus annuus HOM05D004487 ORTHO05D005483 9.3e-56 221.1 243 54.3
arahy.Tifrunner.gnm1.ann1.Z7G166 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.2e-55 220.7 223 53.8
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 1.6e-55 220.3 244 54.9
arahy.Tifrunner.gnm1.ann1.10QJ8K Arachis hypogaea HOM05D004487 ORTHO05D005483 1.6e-55 220.3 217 55.3
Ca_25628_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 1.6e-55 220.3 241 53.1
Glyma.09G092600 Glycine max HOM05D004487 ORTHO05D005483 2.7e-55 219.5 219 57.5
arahy.Tifrunner.gnm1.ann1.NRP8RH Arachis hypogaea HOM05D004487 ORTHO05D005483 4.6e-55 218.8 217 54.8
TPR.G33715 Trifolium pratense HOM05D004487 ORTHO05D005483 1.0e-54 217.6 228 53.1
AUR62000713 Chenopodium quinoa HOM05D004487 ORTHO05D005483 1.8e-54 216.9 201 57.7
Gohir.1Z049552 Gossypium hirsutum HOM05D004487 ORTHO05D005483 3.0e-54 216.1 182 61.5
DCAR_014253 Daucus carota HOM05D004487 ORTHO05D005483 1.1e-53 214.2 237 51.5
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 2.5e-53 213.0 201 56.7
ECA238G1615 Erigeron canadensis HOM05D004487 ORTHO05D005483 3.3e-53 212.6 216 53.7
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 4.3e-53 212.2 238 56.3
Lsat_1_v5_gn_2_120680 Lactuca sativa HOM05D004487 ORTHO05D005483 5.6e-53 211.8 262 50.8
EL10Ac4g09863 Beta vulgaris HOM05D004487 ORTHO05D005483 1.6e-52 210.3 237 50.6
Potri.005G082500 Populus trichocarpa HOM05D004487 ORTHO05D005483 8.1e-52 208.0 242 54.1
Ah.04g161200 Amaranthus hybridus HOM05D004487 ORTHO05D005483 4.0e-51 205.7 235 51.5
Lj2A929T16 Lonicera japonica HOM05D004487 ORTHO05D005483 6.9e-51 204.9 240 55.8
unitig_22.g6757 Utricularia gibba HOM05D004487 ORTHO05D005483 6.9e-51 204.9 227 54.2
arahy.Tifrunner.gnm1.ann1.7417N6 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.6e-50 203.0 224 50.9
arahy.Tifrunner.gnm1.ann1.S1NDRU Arachis hypogaea HOM05D004487 ORTHO05D005483 5.8e-50 201.8 224 50.4
Hma1.2p1_0486F.1_g163280 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 5.8e-50 201.8 198 57.6
Actinidia08329 Actinidia chinensis HOM05D004487 ORTHO05D005483 1.0e-49 201.1 226 54.9
Aqoxy2G03854 Aquilegia oxysepala HOM05D004487 ORTHO05D005483 4.9e-49 198.7 207 58.5
Sc16g0008840 Simmondsia chinensis HOM05D004487 ORTHO05D005483 1.4e-48 197.2 243 48.6
Psat2g176760 Pisum sativum HOM05D004487 ORTHO05D005483 9.3e-48 194.5 241 50.2
arahy.Tifrunner.gnm1.ann1.32WU9K Arachis hypogaea HOM05D004487 ORTHO05D005483 1.6e-47 193.7 211 52.6
Carub.0007s0150 Capsella rubella HOM05D004487 ORTHO05D005483 6.0e-47 191.8 210 51.4
Thhalv10027902m.g Eutrema salsugineum HOM05D004487 ORTHO05D005483 1.8e-46 190.3 240 48.8
arahy.Tifrunner.gnm1.ann1.Y72RXW Arachis hypogaea HOM05D004487 ORTHO05D005483 3.9e-46 189.1 224 49.1
Nitab4.5_0007222g0010 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.9e-45 186.8 240 50.8
VMungo1309G0247 Vigna mungo HOM05D004487 ORTHO05D005483 3.3e-45 186.0 244 45.1
Dinv13358 Davidia involucrata HOM05D004487 ORTHO05D005483 2.8e-44 183.0 175 59.4
Sp7g04740 Schrenkiella parvula HOM05D004487 ORTHO05D005483 4.1e-43 179.1 194 53.1
Dinv05687 Davidia involucrata HOM05D004487 ORTHO05D005483 5.3e-43 178.7 173 59.0
AL7G11780 Arabidopsis lyrata HOM05D004487 ORTHO05D005483 2.6e-42 176.4 213 49.3
arahy.Tifrunner.gnm1.ann1.9RVJ5A Arachis hypogaea HOM05D004487 ORTHO05D005483 5.9e-42 175.3 210 51.9
Actinidia33369 Actinidia chinensis HOM05D004487 ORTHO05D005483 7.6e-42 174.9 241 48.1
Lj4A903G12 Lonicera japonica HOM05D004487 ORTHO05D005483 1.0e-41 174.5 183 59.0
Sabra05G0067500 Salix brachista HOM05D004487 ORTHO05D005483 1.3e-41 174.1 236 50.4
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 2.9e-41 172.9 217 47.0
CDE04G3174 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 5.0e-41 172.2 236 44.9
C04p44290 Brassica napus HOM05D004487 ORTHO05D005483 1.9e-40 170.2 236 44.5
THA.LOC104807718 Tarenaya hassleriana HOM05D004487 ORTHO05D005483 2.5e-40 169.9 241 45.6
BcaC02g09572 Brassica carinata HOM05D004487 ORTHO05D005483 4.2e-40 169.1 221 47.5
BraA04t16724Z Brassica rapa HOM05D004487 ORTHO05D005483 4.2e-40 169.1 217 47.0
BolC4t26003H Brassica oleracea HOM05D004487 ORTHO05D005483 1.6e-39 167.2 227 45.8
Hma1.2p1_0375F.1_g138570 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 2.3e-38 163.3 121 68.6
SHI54251 Sapria himalayana HOM05D004487 ORTHO05D005483 2.3e-38 163.3 240 46.7
ATR0210G008 Amborella trichopoda HOM05D004487 ORTHO05D005483 3.0e-38 162.9 249 44.2
arahy.Tifrunner.gnm1.ann1.L7ETT7 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.5e-37 159.8 172 50.6
BcaB06g27071 Brassica carinata HOM05D004487 ORTHO05D005483 2.5e-37 159.8 226 46.5
AT4G39630 Arabidopsis thaliana HOM05D004487 ORTHO05D005483 4.3e-37 159.1 212 44.8
A04p10610 Brassica napus HOM05D004487 ORTHO05D005483 4.3e-37 159.1 235 43.8
arahy.Tifrunner.gnm1.ann1.I45DC0 Arachis hypogaea HOM05D004487 ORTHO05D005483 7.4e-37 158.3 225 42.7
Sed0026038 Sechium edule HOM05D004487 ORTHO05D005483 1.3e-36 157.5 171 53.8
CARHR215520 Cardamine hirsuta HOM05D004487 ORTHO05D005483 3.7e-36 156.0 239 42.7
Os08g0290400 Oryza sativa ssp. japonica HOM05D004487 ORTHO05D005483 1.1e-35 154.5 238 42.4
TWI53G0384 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 1.1e-35 154.5 238 42.0
HPP92_005242 Vanilla planifolia HOM05D004487 ORTHO05D005483 4.5e-34 149.1 239 42.3
HanXRQChr07g0202331 Helianthus annuus HOM05D004487 ORTHO05D005483 5.9e-34 148.7 167 49.1
arahy.Tifrunner.gnm1.ann1.ZIF87W Arachis hypogaea HOM05D004487 ORTHO05D005483 2.5e-32 143.3 189 48.1
Lj6g0018564 Lotus japonicus HOM05D004487 ORTHO05D005483 1.4e-30 137.5 109 62.4
Sp7g36260 Schrenkiella parvula HOM05D004487 ORTHO05D005483 2.6e-29 133.3 236 39.0
SEGI_02201 Sequoiadendron giganteum HOM05D004487 ORTHO05D005483 9.7e-29 131.3 204 39.7
Zm00001eb192330 Zea mays HOM05D004487 ORTHO05D005483 9.7e-29 131.3 238 39.9
CSS0002847 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.1e-27 127.9 99 71.7
CARHR247100 Cardamine hirsuta HOM05D004487 ORTHO05D005483 1.4e-27 127.5 237 40.5
FAN26G0673 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.8e-27 127.1 151 50.3
arahy.Tifrunner.gnm1.ann1.4M30AQ Arachis hypogaea HOM05D004487 ORTHO05D005483 1.5e-26 124.0 171 45.0
CDE04G3300 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 7.7e-26 121.7 159 45.3
CDE06G2627 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 2.2e-25 120.2 191 40.8
Psat4g139920 Pisum sativum HOM05D004487 ORTHO05D005483 5.3e-19 99.0 128 43.8
Psat4g139880 Pisum sativum HOM05D004487 ORTHO05D005483 2.0e-18 97.1 140 40.7
Lalb_Chr12g0203581 Lupinus albus HOM05D004487 ORTHO05D005483 8.5e-17 91.7 91 54.9
arahy.Tifrunner.gnm1.ann1.3C43J1 Arachis hypogaea HOM05D004487 ORTHO05D005483 3.6e-15 86.3 109 45.9
arahy.Tifrunner.gnm1.ann1.RJV3W7 Arachis hypogaea HOM05D004487 ORTHO05D005483 8.8e-14 81.6 109 44.0
Oeu043116.1 Olea europaea HOM05D004487 ORTHO05D005483 2.6e-13 80.1 157 35.7
arahy.Tifrunner.gnm1.ann1.02EUR6 Arachis hypogaea HOM05D004487 ORTHO05D005483 4.8e-12 75.9 131 35.9
arahy.Tifrunner.gnm1.ann1.PFH739 Arachis hypogaea HOM05D004487 ORTHO05D005483 4.8e-12 75.9 94 43.6
BcaNung00884 Brassica carinata HOM05D004487 ORTHO05D032747 1.8e-11 73.9 85 49.4
ATR0730G218 Amborella trichopoda HOM05D004487 ORTHO05D005483 3.1e-11 73.2 109 42.2
arahy.Tifrunner.gnm1.ann1.PL6VNF Arachis hypogaea HOM05D004487 ORTHO05D005483 4.1e-11 72.8 94 42.6
arahy.Tifrunner.gnm1.ann1.94164M Arachis hypogaea HOM05D004487 ORTHO05D005483 9.1e-11 71.6 86 45.3
arahy.Tifrunner.gnm1.ann1.FJ4QJG Arachis hypogaea HOM05D004487 ORTHO05D005483 1.6e-10 70.9 86 45.3
CSS0015836 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 4.5e-10 69.3 39 92.3
CSS0022213 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 4.5e-10 69.3 39 92.3
arahy.Tifrunner.gnm1.ann1.E9WDF1 Arachis hypogaea HOM05D004487 ORTHO05D005483 6.5e-09 65.5 100 45.0
SGA_v2.0_scaffold83G26423 Striga asiatica HOM05D004487 ORTHO05D005483 8.5e-09 65.1 50 62.0


User provided reference genes

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