Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G2304 Cannabis sativa HOM05D005427 ORTHO05D006461 3.7e-126 454.9 232 100.0
QL06p037683 Quercus lobata HOM05D005427 ORTHO05D006461 5.1e-59 231.9 232 52.2
Ciclev10026408m.g Citrus clementina HOM05D005427 ORTHO05D006461 4.4e-55 218.8 227 50.2
Potri.017G091300 Populus trichocarpa HOM05D005427 ORTHO05D006461 1.7e-54 216.9 226 49.6
Prupe.6G211100 Prunus persica HOM05D005427 ORTHO05D006461 6.4e-54 214.9 225 52.0
Atru.chr3.1127 Acer truncatum HOM05D005427 ORTHO05D006461 3.2e-53 212.6 233 47.2
Atru.chr3.1136 Acer truncatum HOM05D005427 ORTHO05D006461 3.2e-53 212.6 233 47.2
CSS0026502 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 3.2e-53 212.6 231 48.9
GSVIVG01017423001 Vitis vinifera HOM05D005427 ORTHO05D006461 5.4e-53 211.8 233 50.2
Dinv36993 Davidia involucrata HOM05D005427 ORTHO05D006461 1.6e-52 210.3 232 51.7
TAR628G1492 Trochodendron aralioides HOM05D001631 ORTHO05D001591 1.6e-52 210.3 233 50.6
RcHm_v2.0_Chr2g0109701 Rosa chinensis HOM05D005427 ORTHO05D006461 2.1e-52 209.9 230 52.6
CiPaw.08G147100 Carya illinoinensis HOM05D005427 ORTHO05D006461 6.0e-52 208.4 233 50.2
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 6.0e-52 208.4 228 50.9
Rhsim07G0122400 Rhododendron simsii HOM05D005427 ORTHO05D006461 1.7e-51 206.8 241 47.7
Gohir.A11G206966 Gossypium hirsutum HOM05D005427 ORTHO05D006461 2.3e-51 206.5 226 48.2
FvH4_1g18830 Fragaria vesca HOM05D005427 ORTHO05D006461 7.3e-50 201.4 228 50.4
CSS0024088 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 9.6e-50 201.1 232 47.4
CSS0032221 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 1.6e-49 200.3 232 47.4
PGSC0003DMG400012980 Solanum tuberosum HOM05D005427 ORTHO05D006461 2.8e-49 199.5 232 46.1
Gorai.007G232600 Gossypium raimondii HOM05D005427 ORTHO05D006461 3.6e-49 199.1 226 46.9
Dinv21205 Davidia involucrata HOM05D005427 ORTHO05D006461 1.1e-48 197.6 233 50.6
TAR376G0349 Trochodendron aralioides HOM05D005427 ORTHO05D006461 1.4e-48 197.2 233 48.9
Thecc.01G082100 Theobroma cacao HOM05D005427 ORTHO05D006461 1.8e-48 196.8 224 46.9
TWI74G0676 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 1.8e-48 196.8 221 48.9
Manes.13G105100 Manihot esculenta HOM05D005427 ORTHO05D006461 2.4e-48 196.4 232 45.7
Sopen09g003480 Solanum pennellii HOM05D005427 ORTHO05D006461 4.0e-48 195.7 236 45.3
FAN23G0196 Fragaria x ananassa HOM05D005427 ORTHO05D006461 5.3e-48 195.3 241 49.0
Nn1g05775 Nelumbo nucifera HOM05D005427 ORTHO05D006461 9.0e-48 194.5 225 48.0
Solyc09g008680.4 Solanum lycopersicum HOM05D005427 ORTHO05D006461 3.4e-47 192.6 235 46.0
Cpa.g.sc3.369 Carica papaya HOM05D005427 ORTHO05D006461 4.5e-47 192.2 232 44.8
Migut.F01758 Erythranthe guttata HOM05D005427 ORTHO05D006461 9.9e-47 191.0 227 45.4
RcHm_v2.0_Chr5g0054161 Rosa chinensis HOM05D005427 ORTHO05D006461 2.2e-46 189.9 230 49.1
Cfa001616 Carpinus fangiana HOM05D005427 ORTHO05D006461 1.9e-45 186.8 229 45.4
COL.COLO4_11665 Corchorus olitorius HOM05D005427 ORTHO05D006461 5.4e-45 185.3 222 44.6
Glyma.08G273000 Glycine max HOM05D005427 ORTHO05D006461 7.1e-45 184.9 239 43.9
PGR102G2470 Punica granatum HOM05D005427 ORTHO05D006461 7.1e-45 184.9 235 44.3
CAN.G1830.8 Capsicum annuum HOM05D005427 ORTHO05D006461 2.1e-44 183.3 233 42.9
Aqoxy3G03178 Aquilegia oxysepala HOM05D005427 ORTHO05D006461 2.7e-44 183.0 230 45.7
Lalb_Chr04g0263231 Lupinus albus HOM05D005427 ORTHO05D006461 1.8e-43 180.3 236 44.5
THA.LOC104819282 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 1.8e-43 180.3 222 44.1
FAN19G1732 Fragaria x ananassa HOM05D005427 ORTHO05D006461 2.3e-43 179.9 250 44.0
Gohir.D11G216500 Gossypium hirsutum HOM05D005427 ORTHO05D006461 3.0e-43 179.5 206 46.1
ClCG09G016510 Citrullus lanatus HOM05D005427 ORTHO05D006461 3.9e-43 179.1 227 43.6
Lj3g0020172 Lotus japonicus HOM05D005427 ORTHO05D006461 3.9e-43 179.1 243 43.2
AT3G49645 Arabidopsis thaliana HOM05D005427 ORTHO05D006461 8.7e-43 177.9 230 43.0
Eucgr.H02348 Eucalyptus grandis HOM05D005427 ORTHO05D006461 1.1e-42 177.6 215 45.6
Phvul.003G285200 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 1.1e-42 177.6 234 42.3
Carub.0005s1599 Capsella rubella HOM05D005427 ORTHO05D006461 2.5e-42 176.4 220 41.8
vmacro07282 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 3.3e-42 176.0 231 46.3
MELO3C018556.2 Cucumis melo HOM05D005427 ORTHO05D006461 4.3e-42 175.6 231 41.6
AL7G47510 Arabidopsis lyrata HOM05D005427 ORTHO05D006461 5.6e-42 175.3 231 43.7
CsaV3_7G007450 Cucumis sativus L. HOM05D005427 ORTHO05D006461 5.6e-42 175.3 227 41.9
Phvul.003G285800 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 5.6e-42 175.3 234 41.9
AUR62041740 Chenopodium quinoa HOM05D005427 ORTHO05D006461 9.6e-42 174.5 228 45.2
ECA233G5189 Erigeron canadensis HOM05D005427 ORTHO05D006461 9.6e-42 174.5 231 42.4
Nitab4.5_0004281g0090 Nicotiana tabacum HOM05D005427 ORTHO05D006461 1.3e-41 174.1 218 43.6
Aa31LG4G18120 Aethionema arabicum HOM05D005427 ORTHO05D006461 2.1e-41 173.3 229 41.9
CARHR158680 Cardamine hirsuta HOM05D005427 ORTHO05D006461 1.4e-40 170.6 223 41.7
DCAR_006436 Daucus carota HOM05D005427 ORTHO05D006461 1.8e-40 170.2 233 45.1
Thhalv10010700m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 2.4e-40 169.9 222 42.8
Ah.01g015840 Amaranthus hybridus HOM05D005427 ORTHO05D006461 4.0e-40 169.1 228 43.9
Thhalv10019696m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 6.9e-40 168.3 222 42.3
Sed0018601 Sechium edule HOM05D005427 ORTHO05D006461 9.0e-40 167.9 228 42.5
SGA_v2.0_scaffold70G23436 Striga asiatica HOM05D005427 ORTHO05D006461 9.0e-40 167.9 220 40.5
AUR62024067 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.2e-39 167.5 226 44.2
HanXRQChr12g0368771 Helianthus annuus HOM05D005427 ORTHO05D006461 2.0e-39 166.8 209 42.6
Peaxi162Scf00500g00116 Petunia axillaris HOM05D005427 ORTHO05D006461 9.9e-39 164.5 208 47.6
Sp5g12450 Schrenkiella parvula HOM05D005427 ORTHO05D006461 1.7e-38 163.7 223 40.4
A06p28350 Brassica napus HOM05D005427 ORTHO05D006461 2.9e-38 162.9 226 38.9
BraA06t25777Z Brassica rapa HOM05D005427 ORTHO05D006461 2.9e-38 162.9 226 38.9
C03p65440 Brassica napus HOM05D005427 ORTHO05D006461 4.9e-38 162.2 226 38.9
BolC3t18796H Brassica oleracea HOM05D005427 ORTHO05D006461 4.9e-38 162.2 226 38.9
AUR62012052 Chenopodium quinoa HOM05D005427 ORTHO05D006461 4.9e-38 162.2 226 43.8
Haze_16903 Corylus avellana HOM05D005427 ORTHO05D006461 6.4e-38 161.8 247 38.9
Glyma.20G162400 Glycine max HOM05D005427 ORTHO05D006461 6.4e-38 161.8 239 40.6
BcaC01g02424 Brassica carinata HOM05D005427 ORTHO05D006461 8.4e-38 161.4 224 38.8
SGA_v2.0_scaffold4G02171 Striga asiatica HOM05D005427 ORTHO05D006461 3.2e-37 159.5 221 40.7
TPR.G15264 Trifolium pratense HOM05D005427 ORTHO05D006461 3.2e-37 159.5 244 40.2
BcaB01g00686 Brassica carinata HOM05D005427 ORTHO05D006461 7.1e-37 158.3 221 38.5
SGA_v2.0_scaffold147G36350 Striga asiatica HOM05D005427 ORTHO05D006461 7.1e-37 158.3 221 40.3
vmacro05473 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 9.3e-37 157.9 259 39.8
BraA07t29893Z Brassica rapa HOM05D005427 ORTHO05D006461 1.6e-36 157.1 227 37.0
AL5G29490 Arabidopsis lyrata HOM05D007023 ORTHO05D008684 2.7e-36 156.4 216 42.6
EL10Ac9g20957 Beta vulgaris HOM05D005427 ORTHO05D006461 6.0e-36 155.2 216 43.1
Psat4g120800 Pisum sativum HOM05D005427 ORTHO05D006461 6.0e-36 155.2 246 38.6
THA.LOC104799739 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 6.0e-36 155.2 238 37.0
Peaxi162Scf01051g00142 Petunia axillaris HOM05D005427 ORTHO05D006461 2.3e-35 153.3 222 40.5
AUR62019836 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.5e-34 150.6 224 37.1
PSO761G0697 Papaver somniferum HOM05D005427 ORTHO05D006461 1.5e-34 150.6 233 38.6
BcaC07g39428 Brassica carinata HOM05D005427 ORTHO05D006461 2.5e-34 149.8 221 38.0
Hund13132 Selenicereus undatus HOM05D005427 ORTHO05D006461 2.5e-34 149.8 226 37.2
Duzib264G0001 Durio zibethinus HOM05D005427 ORTHO05D006461 3.3e-34 149.4 191 42.9
Hund15020 Selenicereus undatus HOM05D005427 ORTHO05D006461 7.4e-34 148.3 229 37.1
Sc06g0009050 Simmondsia chinensis HOM05D005427 ORTHO05D006461 1.6e-33 147.1 228 36.8
MD01G1046300 Malus domestica HOM05D005427 ORTHO05D006461 2.8e-33 146.4 188 44.7
PSO210G5957 Papaver somniferum HOM05D005427 ORTHO05D006461 2.8e-33 146.4 221 38.5
Ah.01g003640 Amaranthus hybridus HOM05D000109 ORTHO05D000520 6.2e-33 145.2 218 38.1
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 8.2e-33 144.8 252 37.3
A07p22100 Brassica napus HOM05D005427 ORTHO05D006461 8.2e-33 144.8 247 34.0
BraA06t24896Z Brassica rapa HOM05D007023 ORTHO05D008684 4.0e-32 142.5 222 37.4
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 5.3e-32 142.1 224 37.9
Hund00873 Selenicereus undatus HOM05D005427 ORTHO05D006461 1.0e-30 137.9 210 36.7
BcaB02g09598 Brassica carinata HOM05D005427 ORTHO05D006461 1.3e-30 137.5 223 37.2
Zm00001eb064010 Zea mays HOM05D005427 ORTHO05D006461 1.3e-30 137.5 244 33.2
Medtr8g067265 Medicago truncatula HOM05D005427 ORTHO05D006461 3.8e-30 136.0 220 39.1
Zm00001eb210960 Zea mays HOM05D005427 ORTHO05D006461 8.4e-30 134.8 218 33.9
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 1.1e-29 134.4 283 33.9
BolC8t50081H Brassica oleracea HOM05D007023 ORTHO05D008684 1.1e-29 134.4 215 36.7
C08p24660 Brassica napus HOM05D007023 ORTHO05D008684 2.5e-29 133.3 207 37.7
A06p18060 Brassica napus HOM05D007023 ORTHO05D008684 7.1e-29 131.7 213 37.6
Os10g0360900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 6.0e-28 128.6 224 32.6
HPP92_024834 Vanilla planifolia HOM05D005427 ORTHO05D006461 6.0e-28 128.6 227 34.8
HPP92_026626 Vanilla planifolia HOM05D005427 ORTHO05D006461 6.0e-28 128.6 227 34.8
Phvul.002G065300 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 5.1e-27 125.6 176 40.9
Sabra17G0080400 Salix brachista HOM05D005427 ORTHO05D006461 5.1e-27 125.6 220 36.4
Hma1.2p1_0561F.1_g178960 Hydrangea macrophylla HOM05D005427 ORTHO05D006461 1.5e-26 124.0 161 44.7
Lsat_1_v5_gn_8_18901 Lactuca sativa HOM05D005427 ORTHO05D006461 2.5e-26 123.2 238 32.8
FAN26G2664 Fragaria x ananassa HOM05D005427 ORTHO05D006461 6.9e-24 115.2 232 38.4
FAN27G1155 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.2e-23 114.4 230 37.0
AagrBONN_evm.TU.Sc2ySwM_228.2937 Anthoceros agrestis HOM05D005427 ORTHO05D006461 5.9e-23 112.1 210 31.4
TWI77G0140 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 2.2e-22 110.2 117 44.4
Cc09_g02990 Coffea canephora HOM05D005427 ORTHO05D006461 5.5e-21 105.5 95 55.8
EL10Ac6g13479 Beta vulgaris HOM05D005427 ORTHO05D006461 7.2e-21 105.1 181 35.9
Pp3c24_9930 Physcomitrium patens HOM05D005427 ORTHO05D006461 3.0e-19 99.8 228 28.9
Nitab4.5_0006709g0040 Nicotiana tabacum HOM05D005427 ORTHO05D006461 6.7e-19 98.6 95 47.4
Os07g0264900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 1.1e-18 97.8 183 33.3
Cc09_g03000 Coffea canephora HOM05D005427 ORTHO05D006461 1.9e-18 97.1 117 48.7
VMungo1309G2225 Vigna mungo HOM05D005427 ORTHO05D006461 6.3e-17 92.0 139 42.4
CSS0003252 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 2.4e-16 90.1 91 56.0
Carub.0005s0959 Capsella rubella HOM05D005427 ORTHO05D006461 3.1e-16 89.7 76 57.9
Rhsim10G0082400 Rhododendron simsii HOM05D005427 ORTHO05D006461 2.0e-15 87.0 61 68.9
MSTRG.375 Avicennia marina HOM05D005427 ORTHO05D006461 2.2e-14 83.6 90 48.9
MBI16_g14676_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 2.2e-14 83.6 113 41.6
SMO367G1008 Selaginella moellendorffii HOM05D005427 ORTHO05D006461 6.5e-14 82.0 183 28.4
SalBow7G4264 Salvia bowleyana HOM05D005427 ORTHO05D006461 1.1e-13 81.3 111 41.4
Ah.16g109230 Amaranthus hybridus HOM05D005427 ORTHO05D006461 1.4e-13 80.9 112 36.6
MBI16_g26727_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 9.4e-13 78.2 65 60.0
MD00G1139600 Malus domestica HOM05D005427 ORTHO05D006461 2.7e-12 76.6 56 67.9
MD04G1240700 Malus domestica HOM05D005427 ORTHO05D006461 2.7e-12 76.6 56 67.9
Mapoly0002s0147 Marchantia polymorpha HOM05D005427 ORTHO05D006461 1.4e-11 74.3 230 29.1
Mapoly0085s0034 Marchantia polymorpha HOM05D005427 ORTHO05D006461 4.4e-10 69.3 216 26.9
AagrBONN_evm.TU.Sc2ySwM_344.3300 Anthoceros agrestis HOM05D005427 ORTHO05D006461 2.8e-09 66.6 86 41.9
Lsat_1_v5_gn_7_80981 Lactuca sativa HOM05D005427 ORTHO05D006461 2.8e-09 66.6 65 47.7
SEGI_00262 Sequoiadendron giganteum HOM05D005427 ORTHO05D006461 3.7e-09 66.2 73 42.5
Actinidia11934 Actinidia chinensis HOM05D005427 ORTHO05D006461 1.4e-08 64.3 117 40.2
Mapoly0028s0128 Marchantia polymorpha HOM05D005427 ORTHO05D006461 2.2e-06 57.0 215 26.0
CBR_g36746 Chara braunii HOM05D005427 ORTHO05D006461 6.5e-06 55.5 275 18.9


User provided reference genes

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