Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 1.3e-161 573.2 330 100.0
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 4.9e-100 368.6 335 70.7
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 9.3e-99 364.4 304 68.1
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 1.2e-98 364.0 338 68.9
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.6e-98 363.6 298 69.5
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 2.1e-98 363.2 298 69.5
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.1e-98 363.2 298 69.5
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 6.0e-98 361.7 333 70.6
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 1.0e-97 360.9 298 67.1
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 3.9e-97 359.0 298 69.1
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 1.1e-96 357.5 298 68.1
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.9e-96 356.7 298 68.5
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 3.3e-96 355.9 335 70.4
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 4.8e-95 352.1 339 68.1
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 4.8e-95 352.1 300 66.7
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 8.2e-95 351.3 345 65.8
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 6.9e-94 348.2 336 68.5
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 9.0e-94 347.8 333 67.0
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 1.2e-93 347.4 339 67.8
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 1.2e-93 347.4 338 68.0
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 2.0e-93 346.7 296 66.2
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 2.6e-93 346.3 339 69.0
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 3.4e-93 345.9 352 65.9
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 6.5e-92 341.7 299 65.2
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 1.1e-91 340.9 343 67.1
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 1.4e-91 340.5 339 67.3
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 1.9e-91 340.1 339 67.0
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 1.8e-89 333.6 333 65.8
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 5.1e-89 332.0 297 64.3
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 8.7e-89 331.3 335 66.6
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 2.5e-88 329.7 334 63.2
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 3.3e-88 329.3 338 66.0
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 9.7e-88 327.8 332 68.1
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 1.8e-86 323.6 338 65.7
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 4.1e-86 322.4 292 61.6
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 2.0e-85 320.1 339 64.0
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 5.9e-85 318.5 369 59.3
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 7.7e-85 318.2 300 63.3
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 6.5e-84 315.1 296 61.8
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 1.1e-83 314.3 338 64.2
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.0e-81 307.8 336 61.6
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 1.4e-81 307.4 279 63.4
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.4e-81 307.4 334 62.6
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 1.5e-77 293.9 293 59.4
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 2.9e-76 289.7 309 57.3
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 3.6e-74 282.7 316 53.5
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 4.7e-74 282.3 297 58.9
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 4.7e-74 282.3 302 56.3
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 1.4e-73 280.8 294 58.8
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 6.7e-73 278.5 297 57.9
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 8.8e-73 278.1 294 58.2
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 1.5e-72 277.3 307 56.4
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 3.3e-72 276.2 337 58.8
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 9.7e-72 274.6 312 53.5
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 1.3e-71 274.2 302 57.0
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 1.3e-71 274.2 300 56.0
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 1.7e-71 273.9 303 54.5
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 4.8e-71 272.3 293 58.4
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 6.3e-71 271.9 305 56.4
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 8.2e-71 271.6 299 57.2
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.1e-70 271.2 294 57.1
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 2.4e-70 270.0 298 56.0
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 2.6e-69 266.5 306 54.6
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 2.6e-69 266.5 292 57.5
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 3.5e-69 266.2 308 54.9
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 4.5e-69 265.8 306 53.9
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 4.5e-69 265.8 302 56.6
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 5.9e-69 265.4 301 54.8
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 7.7e-69 265.0 298 55.0
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 7.7e-69 265.0 330 51.5
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 7.7e-69 265.0 330 51.5
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 1.3e-68 264.2 304 54.9
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 1.3e-68 264.2 340 55.0
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 1.7e-68 263.8 311 53.4
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 8.5e-68 261.5 302 54.0
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 1.5e-67 260.8 291 53.6
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 1.9e-67 260.4 319 51.4
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 3.2e-67 259.6 299 52.8
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 7.2e-67 258.5 335 56.1
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.1e-66 256.9 295 53.2
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 2.1e-66 256.9 335 50.1
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 3.6e-66 256.1 299 52.2
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 4.7e-66 255.8 315 50.8
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 6.1e-66 255.4 294 54.1
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 1.4e-65 254.2 300 53.3
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.8e-65 253.8 251 60.2
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 6.7e-65 251.9 299 52.2
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 2.6e-64 250.0 295 51.9
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 2.6e-64 250.0 303 52.5
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 5.7e-64 248.8 311 52.1
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 7.4e-64 248.4 299 53.2
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 9.7e-64 248.1 290 53.1
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 3.1e-62 243.0 309 50.5
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 7.0e-62 241.9 297 51.2
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 1.2e-61 241.1 298 51.0
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.6e-61 240.7 306 51.0
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 2.0e-61 240.4 298 49.0
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 2.0e-61 240.4 318 49.1
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 2.0e-61 240.4 270 55.6
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 2.6e-61 240.0 247 57.5
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 2.6e-61 240.0 302 50.7
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 3.5e-61 239.6 295 50.2
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 5.9e-61 238.8 334 54.5
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 1.7e-60 237.3 293 50.9
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 8.5e-60 235.0 299 49.8
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 8.5e-60 235.0 333 52.3
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 1.1e-59 234.6 261 55.6
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 2.5e-59 233.4 297 51.2
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 3.2e-59 233.0 295 49.8
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 9.4e-59 231.5 315 47.9
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 3.0e-57 226.5 302 51.0
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 6.8e-57 225.3 292 50.7
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 1.2e-56 224.6 303 50.5
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 5.7e-56 222.2 338 43.2
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 9.8e-56 221.5 296 48.3
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 8.3e-55 218.4 287 48.8
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 1.1e-54 218.0 273 52.7
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 7.0e-54 215.3 274 50.0
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 7.0e-54 215.3 318 47.2
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 5.0e-52 209.1 302 47.0
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 7.2e-51 205.3 166 67.5
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 9.4e-51 204.9 293 46.4
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 1.2e-50 204.5 307 46.3
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 2.7e-50 203.4 228 51.8
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 8.0e-50 201.8 228 51.3
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 6.8e-49 198.7 228 51.3
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 8.8e-49 198.4 304 43.4
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 4.4e-48 196.1 292 45.9
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 4.4e-48 196.1 160 64.4
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 1.4e-46 191.0 164 61.0
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 3.1e-46 189.9 299 41.1
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 4.5e-45 186.0 168 62.5
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 1.0e-44 184.9 122 72.1
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 1.1e-43 181.4 297 41.4
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 2.8e-42 176.8 299 41.5
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 3.0e-41 173.3 182 54.4
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.6e-40 170.2 160 58.8
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 1.3e-39 167.9 124 67.7
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 1.2e-37 161.4 292 39.7
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 2.0e-37 160.6 288 39.9
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 7.8e-37 158.7 297 38.7
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 2.5e-35 153.7 118 64.4
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 4.3e-35 152.9 144 61.8
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 5.6e-35 152.5 162 51.2
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 3.4e-32 143.3 311 35.7
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 3.4e-32 143.3 128 55.5
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 4.4e-32 142.9 246 41.9
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 2.2e-31 140.6 119 61.3
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 1.9e-30 137.5 167 49.1
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 2.3e-28 130.6 180 60.6
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 2.3e-28 130.6 77 83.1
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 1.1e-27 128.3 279 37.6
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 3.3e-27 126.7 172 48.3
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 6.2e-26 122.5 167 40.1
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 3.9e-12 76.6 160 42.5
Sed0022868 Sechium edule HOM05D004323 ORTHO05D005140 5.1e-12 76.3 51 74.5
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 4.3e-11 73.2 55 60.0
Nn091s42875 Nelumbo nucifera HOM05D004323 ORTHO05D005140 3.6e-10 70.1 111 45.9
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.4e-09 68.2 140 42.9
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 6.8e-09 65.9 48 64.6
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 1.1e-06 58.5 159 37.1
QL02p048579 Quercus lobata HOM05D004323 ORTHO05D005140 1.4e-06 58.2 130 36.9
SEGI_05570 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 3.2e-06 57.0 93 44.1


User provided reference genes

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