Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G2273 Cannabis sativa HOM05D007225 ORTHO05D009062 2.9e-129 465.3 249 100.0
Prupe.4G273000 Prunus persica HOM05D007225 ORTHO05D009062 3.5e-74 282.3 254 65.0
FvH4_4g13030 Fragaria vesca HOM05D007225 ORTHO05D009062 1.6e-71 273.5 246 63.4
FAN12G1161 Fragaria x ananassa HOM05D007225 ORTHO05D009062 1.6e-71 273.5 246 63.0
Ciclev10002244m.g Citrus clementina HOM05D007225 ORTHO05D009062 2.8e-71 272.7 256 61.7
Atru.chr4.938 Acer truncatum HOM05D007225 ORTHO05D009062 6.2e-71 271.6 254 61.4
CiPaw.04G081200 Carya illinoinensis HOM05D007225 ORTHO05D009062 4.0e-70 268.9 257 61.1
QL10p043051 Quercus lobata HOM05D007225 ORTHO05D009062 5.2e-70 268.5 298 54.7
FAN07G2982 Fragaria x ananassa HOM05D007225 ORTHO05D009062 4.4e-69 265.4 246 61.8
RcHm_v2.0_Chr4g0412751 Rosa chinensis HOM05D007225 ORTHO05D009062 6.4e-68 261.5 246 61.4
Dinv24394 Davidia involucrata HOM05D007225 ORTHO05D009062 8.4e-68 261.2 258 61.2
TAR625G0602 Trochodendron aralioides HOM05D007225 ORTHO05D009062 6.0e-66 255.0 264 55.7
COL.COLO4_35773 Corchorus olitorius HOM05D007225 ORTHO05D009062 4.8e-63 245.4 255 57.6
Potri.005G064800 Populus trichocarpa HOM05D007225 ORTHO05D009062 8.1e-63 244.6 257 56.4
Potri.005G064951 Populus trichocarpa HOM05D007225 ORTHO05D009062 1.8e-62 243.4 257 56.0
Sabra05G0053800 Salix brachista HOM05D007225 ORTHO05D009062 4.0e-62 242.3 257 55.3
Thecc.01G134800 Theobroma cacao HOM05D007225 ORTHO05D009062 4.5e-61 238.8 245 58.8
CSS0045766 Camellia sinensis var. sinensis HOM05D007225 ORTHO05D009062 5.8e-61 238.4 256 57.0
Eucgr.I00189 Eucalyptus grandis HOM05D007225 ORTHO05D009062 5.8e-61 238.4 246 57.7
MD17G1201700 Malus domestica HOM05D007225 ORTHO05D009062 5.8e-61 238.4 255 58.4
Hma1.2p1_0539F.1_g174530 Hydrangea macrophylla HOM05D007225 ORTHO05D009062 7.6e-61 238.0 257 57.2
Cc07_g18810 Coffea canephora HOM05D007225 ORTHO05D009062 9.9e-61 237.7 256 53.9
Gorai.011G119000 Gossypium raimondii HOM05D007225 ORTHO05D009062 2.2e-60 236.5 250 58.0
TAR381G0670 Trochodendron aralioides HOM05D007225 ORTHO05D009062 4.9e-60 235.3 260 52.7
Gohir.D10G108600 Gossypium hirsutum HOM05D007225 ORTHO05D009062 8.4e-60 234.6 250 57.6
PGSC0003DMG400012541 Solanum tuberosum HOM05D007225 ORTHO05D009062 1.4e-59 233.8 254 53.9
Solyc01g105570.4 Solanum lycopersicum HOM05D007225 ORTHO05D009062 5.4e-59 231.9 253 54.2
Sopen01g048040 Solanum pennellii HOM05D007225 ORTHO05D009062 2.1e-58 229.9 253 53.8
vmacro12787 Vaccinium macrocarpon HOM05D007225 ORTHO05D009062 4.6e-58 228.8 256 54.3
Lj4g0008022 Lotus japonicus HOM05D007225 ORTHO05D009062 6.7e-57 224.9 251 55.0
Ca_17629_v3 Cicer arietinum L. HOM05D007225 ORTHO05D009062 1.1e-56 224.2 246 55.7
Cpa.g.sc42.174 Carica papaya HOM05D007225 ORTHO05D009062 1.5e-56 223.8 260 52.3
PGR119G1418 Punica granatum HOM05D007225 ORTHO05D009062 1.9e-56 223.4 247 55.5
Hund04436 Selenicereus undatus HOM05D007225 ORTHO05D009062 1.9e-56 223.4 262 52.7
TPR.G37342 Trifolium pratense HOM05D007225 ORTHO05D009062 4.3e-56 222.2 246 54.5
Psat7g045080 Pisum sativum HOM05D007225 ORTHO05D009062 1.3e-55 220.7 246 54.1
MBI06_g27455_MAGBIO Magnolia biondii HOM05D007225 ORTHO05D009062 1.6e-55 220.3 259 51.7
Nitab4.5_0000386g0080 Nicotiana tabacum HOM05D007225 ORTHO05D009062 3.7e-55 219.2 251 51.0
Oeu058297.1 Olea europaea HOM05D007225 ORTHO05D009062 2.4e-54 216.5 249 50.6
Lalb_Chr13g0296631 Lupinus albus HOM05D007225 ORTHO05D009062 9.0e-54 214.5 248 53.2
Sc07g0001760 Simmondsia chinensis HOM05D007225 ORTHO05D009062 1.2e-53 214.2 248 54.0
PSO528G0250 Papaver somniferum HOM05D007225 ORTHO05D009062 2.6e-53 213.0 271 48.0
CsaV3_2G019450 Cucumis sativus L. HOM05D007225 ORTHO05D009062 3.4e-53 212.6 249 51.4
Sed0013127 Sechium edule HOM05D007225 ORTHO05D009062 2.4e-51 206.5 245 53.1
Aqoxy5G02304 Aquilegia oxysepala HOM05D007225 ORTHO05D009062 5.5e-51 205.3 273 49.5
PSO170G5625 Papaver somniferum HOM05D007225 ORTHO05D009062 7.1e-51 204.9 268 46.3
AUR62017902 Chenopodium quinoa HOM05D007225 ORTHO05D009062 1.6e-50 203.8 274 48.5
AUR62043562 Chenopodium quinoa HOM05D007225 ORTHO05D009062 1.6e-50 203.8 274 48.5
ClCG02G000390 Citrullus lanatus HOM05D007225 ORTHO05D009062 1.0e-49 201.1 257 51.4
MSTRG.23466 Avicennia marina HOM05D007225 ORTHO05D009062 8.7e-49 198.0 247 49.0
Migut.H00686 Erythranthe guttata HOM05D007225 ORTHO05D009062 2.5e-48 196.4 252 49.2
AUR62003589 Chenopodium quinoa HOM05D007225 ORTHO05D009062 3.3e-48 196.1 274 47.4
Duzib187G1928 Durio zibethinus HOM05D007225 ORTHO05D009062 3.3e-48 196.1 255 51.4
EL10Ac1g01390 Beta vulgaris HOM05D007225 ORTHO05D009062 2.1e-47 193.4 310 42.9
Rhsim10G0132500 Rhododendron simsii HOM05D007225 ORTHO05D009062 1.4e-46 190.7 375 38.7
Gohir.A10G156900 Gossypium hirsutum HOM05D007225 ORTHO05D009062 2.6e-45 186.4 173 60.7
Lsat_1_v5_gn_5_68521 Lactuca sativa HOM05D007225 ORTHO05D009062 5.8e-45 185.3 251 47.4
Manes.12G157300 Manihot esculenta HOM05D007225 ORTHO05D009062 5.8e-45 185.3 201 51.7
Glyma.05G192800 Glycine max HOM05D007225 ORTHO05D009062 7.6e-45 184.9 249 46.6
GSVIVG01022343001 Vitis vinifera HOM05D007225 ORTHO05D009062 2.2e-44 183.3 159 62.9
ECA233G3017 Erigeron canadensis HOM05D007225 ORTHO05D000131 1.9e-43 180.3 211 51.7
AL8G41270 Arabidopsis lyrata HOM05D007225 ORTHO05D009062 3.2e-43 179.5 242 46.7
AT5G64010 Arabidopsis thaliana HOM05D007225 ORTHO05D009062 3.2e-43 179.5 242 46.7
Sp2g27080 Schrenkiella parvula HOM05D007225 ORTHO05D009062 4.2e-43 179.1 244 49.2
Phvul.002G273400 Phaseolus vulgaris HOM05D007225 ORTHO05D009062 7.1e-43 178.3 250 49.6
Medtr8g093850 Medicago truncatula HOM05D007225 ORTHO05D009062 4.6e-42 175.6 175 56.0
A06p30630 Brassica napus HOM05D007225 ORTHO05D009062 6.0e-42 175.3 242 47.5
BraA06t26013Z Brassica rapa HOM05D007225 ORTHO05D009062 1.0e-41 174.5 242 48.3
Aqoxy6G00280 Aquilegia oxysepala HOM05D007225 ORTHO05D009062 1.3e-41 174.1 262 42.4
Thhalv10004850m.g Eutrema salsugineum HOM05D007225 ORTHO05D009062 2.3e-41 173.3 241 46.5
CARHR277930 Cardamine hirsuta HOM05D007225 ORTHO05D002208 1.1e-40 171.0 241 46.9
Carub.0008s2479 Capsella rubella HOM05D007225 ORTHO05D009062 7.4e-40 168.3 245 45.3
C03p62330 Brassica napus HOM05D007225 ORTHO05D009062 9.7e-40 167.9 243 45.7
Peaxi162Scf00172g00611 Petunia axillaris HOM05D007225 ORTHO05D009062 9.7e-40 167.9 175 52.6
BcaC01g02654 Brassica carinata HOM05D007225 ORTHO05D009062 2.2e-39 166.8 243 45.3
BolC3t18495H Brassica oleracea HOM05D007225 ORTHO05D009062 2.2e-39 166.8 243 45.3
Nn5g28498 Nelumbo nucifera HOM05D007225 ORTHO05D009062 3.1e-38 162.9 179 50.8
DCAR_010250 Daucus carota HOM05D007225 ORTHO05D009062 5.3e-38 162.2 260 41.9
VMungo0251G1761 Vigna mungo HOM05D007225 ORTHO05D009062 2.2e-36 156.8 229 45.9
THA.LOC104818429 Tarenaya hassleriana HOM05D007225 ORTHO05D009062 5.0e-36 155.6 240 46.2
Nn1g06303 Nelumbo nucifera HOM05D007225 ORTHO05D009062 8.5e-36 154.8 263 41.8
Haze_25275 Corylus avellana HOM05D007225 ORTHO05D009062 1.2e-34 151.0 109 68.8
Ah.02g121670 Amaranthus hybridus HOM05D007225 ORTHO05D009062 3.0e-33 146.4 213 45.1
DCAR_014328 Daucus carota HOM05D007225 ORTHO05D009062 1.5e-32 144.1 249 40.2
HanXRQChr12g0380581 Helianthus annuus HOM05D007225 ORTHO05D009062 3.3e-32 142.9 184 47.3
HPP92_025180 Vanilla planifolia HOM05D007225 ORTHO05D009062 7.4e-32 141.7 273 37.0
Aa31LG1G17910 Aethionema arabicum HOM05D007225 ORTHO05D009062 9.7e-32 141.4 255 43.5
ATR0709G077 Amborella trichopoda HOM05D007225 ORTHO05D009062 5.3e-30 135.6 214 43.0
arahy.Tifrunner.gnm1.ann1.ST1FFJ Arachis hypogaea HOM05D007225 ORTHO05D009062 3.4e-29 132.9 239 40.2
Os04g0693250 Oryza sativa ssp. japonica HOM05D007225 ORTHO05D009062 4.5e-29 132.5 269 35.3
RcHm_v2.0_Chr4g0412711 Rosa chinensis HOM05D007225 ORTHO05D009062 2.2e-28 130.2 115 59.1
MELO3C023228.2 Cucumis melo HOM05D007225 ORTHO05D009062 2.9e-28 129.8 161 52.2
AagrBONN_evm.TU.Sc2ySwM_368.986 Anthoceros agrestis HOM05D007225 ORTHO05D009062 8.5e-28 128.3 247 33.2
unitig_699.g19729 Utricularia gibba HOM05D007225 ORTHO05D009062 1.1e-27 127.9 255 38.4
Glyma.08G000900 Glycine max HOM05D007225 ORTHO05D009062 5.5e-27 125.6 243 39.5
Mapoly0095s0053 Marchantia polymorpha HOM05D007225 ORTHO05D009062 7.9e-26 121.7 209 35.9
Pp3c8_18500 Physcomitrium patens HOM05D007225 ORTHO05D009062 3.0e-25 119.8 222 36.0
SHI11479 Sapria himalayana HOM05D000043 ORTHO05D002577 3.7e-23 112.8 100 52.0
SGA_v2.0_scaffold20G09018 Striga asiatica HOM05D007225 ORTHO05D009062 3.7e-23 112.8 165 46.7
AagrBONN_evm.TU.Sc2ySwM_117.1984 Anthoceros agrestis HOM05D007225 ORTHO05D009062 7.7e-21 105.1 228 31.6
Nitab4.5_0008206g0020 Nicotiana tabacum HOM05D007225 ORTHO05D009062 1.3e-20 104.4 155 47.7
SMO146G0397 Selaginella moellendorffii HOM05D007225 ORTHO05D009062 1.7e-20 104.0 263 30.8
Nitab4.5_0010123g0010 Nicotiana tabacum HOM05D007225 ORTHO05D009062 3.2e-19 99.8 155 49.0
Carub.0003s2889 Capsella rubella HOM05D007225 ORTHO05D009062 1.6e-18 97.4 90 55.6
Os04g0693200 Oryza sativa ssp. japonica HOM05D007225 ORTHO05D009062 1.4e-09 67.8 98 36.7
GSVIVG01022344001 Vitis vinifera HOM05D007225 ORTHO05D009062 2.6e-08 63.5 102 45.1
SEGI_25786 Sequoiadendron giganteum HOM05D021798 ORTHO05D009062 4.4e-08 62.8 154 29.2
arahy.Tifrunner.gnm1.ann1.LBHD5T Arachis hypogaea HOM05D007225 ORTHO05D009062 8.2e-07 58.5 48 54.2


User provided reference genes

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