Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G2272 Cannabis sativa HOM05D007427 ORTHO05D006413 1.7e-37 159.5 122 100.0
CiPaw.04G107800 Carya illinoinensis HOM05D007427 ORTHO05D006413 1.1e-12 77.0 64 64.1
CiPaw.03G152700 Carya illinoinensis HOM05D007427 ORTHO05D006413 1.2e-11 73.6 81 55.6
CiPaw.04G107700 Carya illinoinensis HOM05D007427 ORTHO05D006413 2.7e-11 72.4 80 52.5
Ciclev10022672m.g Citrus clementina HOM05D007427 ORTHO05D006413 4.6e-11 71.6 75 54.7
Duzib138G0914 Durio zibethinus HOM05D007427 ORTHO05D006413 6.0e-11 71.2 62 66.1
COL.COLO4_28358 Corchorus olitorius HOM05D007427 ORTHO05D006413 1.0e-10 70.5 63 58.7
Cpa.g.sc8.193 Carica papaya HOM05D007427 ORTHO05D006413 1.8e-10 69.7 65 61.5
Glyma.19G171900 Glycine max HOM05D007427 ORTHO05D006413 1.8e-10 69.7 62 62.9
CSS0036288 Camellia sinensis var. sinensis HOM05D007427 ORTHO05D006413 2.3e-10 69.3 61 60.7
Glyma.03G170800 Glycine max HOM05D007427 ORTHO05D006413 3.0e-10 68.9 80 53.8
Thecc.01G231700 Theobroma cacao HOM05D007427 ORTHO05D006413 3.0e-10 68.9 67 55.2
CSS0029156 Camellia sinensis var. sinensis HOM05D007427 ORTHO05D006413 5.1e-10 68.2 61 60.7
COL.COLO4_17317 Corchorus olitorius HOM05D007427 ORTHO05D006413 5.1e-10 68.2 62 59.7
QL09p044390 Quercus lobata HOM05D007427 ORTHO05D006413 5.1e-10 68.2 80 52.5
Glyma.03G170900 Glycine max HOM05D007427 ORTHO05D006413 6.7e-10 67.8 62 62.9
Gohir.D07G160600 Gossypium hirsutum HOM05D007427 ORTHO05D006413 8.7e-10 67.4 71 53.5
Rhsim13G0042300 Rhododendron simsii HOM05D007427 ORTHO05D006413 8.7e-10 67.4 63 54.0
Ciclev10022773m.g Citrus clementina HOM05D007427 ORTHO05D006413 1.1e-09 67.0 73 52.1
Haze_24760 Corylus avellana HOM05D007427 ORTHO05D006413 1.1e-09 67.0 64 59.4
Gohir.A07G154300 Gossypium hirsutum HOM05D007427 ORTHO05D006413 1.5e-09 66.6 71 53.5
VMungo1383G3325 Vigna mungo HOM05D007427 ORTHO05D006413 1.5e-09 66.6 64 62.5
Phvul.001G168900 Phaseolus vulgaris HOM05D007427 ORTHO05D006413 1.9e-09 66.2 62 59.7
Thecc.01G231600 Theobroma cacao HOM05D007427 ORTHO05D006413 2.5e-09 65.9 62 59.7
Medtr7g099670 Medicago truncatula HOM05D007427 ORTHO05D006413 3.3e-09 65.5 63 57.1
SGA_v2.0_scaffold42G16152 Striga asiatica HOM05D007427 ORTHO05D006413 3.3e-09 65.5 81 49.4
Actinidia23744 Actinidia chinensis HOM05D007427 ORTHO05D006413 4.3e-09 65.1 59 55.9
Duzib211G0080 Durio zibethinus HOM05D007427 ORTHO05D006413 4.3e-09 65.1 64 56.2
Lj1g0018605 Lotus japonicus HOM05D007427 ORTHO05D006413 4.3e-09 65.1 62 61.3
Migut.N02250 Erythranthe guttata HOM05D007427 ORTHO05D006413 9.6e-09 63.9 65 52.3
Gohir.A07G154400 Gossypium hirsutum HOM05D007427 ORTHO05D006413 9.6e-09 63.9 64 59.4
Gohir.D07G160800 Gossypium hirsutum HOM05D007427 ORTHO05D006413 9.6e-09 63.9 64 59.4
Gorai.001G183700 Gossypium raimondii HOM05D007427 ORTHO05D006413 9.6e-09 63.9 64 59.4
Prupe.8G208000 Prunus persica HOM05D007427 ORTHO05D006413 9.6e-09 63.9 81 59.3
Lalb_Chr25g0289621 Lupinus albus HOM05D007427 ORTHO05D006413 1.3e-08 63.5 59 57.6
Medtr1g069085 Medicago truncatula HOM05D007427 ORTHO05D006413 1.3e-08 63.5 62 61.3
Lalb_Chr01g0019331 Lupinus albus HOM05D007427 ORTHO05D006413 2.1e-08 62.8 60 56.7
QL09p044388 Quercus lobata HOM05D007427 ORTHO05D006413 2.8e-08 62.4 59 57.6
ClCG09G009270 Citrullus lanatus HOM05D007427 ORTHO05D006413 3.7e-08 62.0 64 54.7
Duzib138G0919 Durio zibethinus HOM05D007427 ORTHO05D006413 3.7e-08 62.0 102 45.1
CsaV3_7G025650 Cucumis sativus L. HOM05D007427 ORTHO05D006413 4.8e-08 61.6 64 57.8
Dinv19234 Davidia involucrata HOM05D007427 ORTHO05D006413 4.8e-08 61.6 59 52.5
Carub.0007s1161 Capsella rubella HOM05D008344 ORTHO05D006413 6.2e-08 61.2 80 53.8
Sed0020523 Sechium edule HOM05D007427 ORTHO05D006413 6.2e-08 61.2 64 59.4
arahy.Tifrunner.gnm1.ann1.KG3A2Z Arachis hypogaea HOM05D007427 ORTHO05D006413 8.1e-08 60.8 54 61.1
MELO3C024163.2 Cucumis melo HOM05D007427 ORTHO05D006413 8.1e-08 60.8 64 57.8
SalBow4G2254 Salvia bowleyana HOM05D007427 ORTHO05D006413 8.1e-08 60.8 63 52.4
CANSAT01G2831 Cannabis sativa HOM05D007427 ORTHO05D006413 1.1e-07 60.5 56 57.1
CsaV3_3G039490 Cucumis sativus L. HOM05D007427 ORTHO05D006413 1.1e-07 60.5 49 63.3
ECA247G2869 Erigeron canadensis HOM05D047643 ORTHO05D006413 1.1e-07 60.5 87 44.8
ClCG09G009340 Citrullus lanatus HOM05D007427 ORTHO05D006413 1.4e-07 60.1 63 57.1
Psat3g049800 Pisum sativum HOM05D007427 ORTHO05D006413 1.4e-07 60.1 64 54.7
Atru.chr5.1886 Acer truncatum HOM05D007427 ORTHO05D006413 2.4e-07 59.3 82 48.8
BcaNung00447 Brassica carinata HOM05D008344 ORTHO05D006413 3.1e-07 58.9 65 55.4
Psat6g064560 Pisum sativum HOM05D007427 ORTHO05D006413 3.1e-07 58.9 62 56.5
Sabra02G0191700 Salix brachista HOM05D007427 ORTHO05D006413 3.1e-07 58.9 67 50.7
unitig_8.g3079 Utricularia gibba HOM05D007427 ORTHO05D006413 3.1e-07 58.9 81 45.7
AL7G23430 Arabidopsis lyrata HOM05D008344 ORTHO05D006413 4.0e-07 58.5 82 48.8
ECA236G2240 Erigeron canadensis HOM05D007427 ORTHO05D006413 4.0e-07 58.5 51 56.9
Gohir.D08G211500 Gossypium hirsutum HOM05D007427 ORTHO05D006413 4.0e-07 58.5 72 47.2
Gorai.004G224800 Gossypium raimondii HOM05D007427 ORTHO05D006413 4.0e-07 58.5 72 47.2
MD05G1181500 Malus domestica HOM05D007427 ORTHO05D006413 4.0e-07 58.5 80 48.8
Glyma.10G043100 Glycine max HOM05D007427 ORTHO05D006413 5.3e-07 58.2 65 53.8
RcHm_v2.0_Chr6g0285411 Rosa chinensis HOM05D007427 ORTHO05D006413 5.3e-07 58.2 81 48.1
Gohir.A08G193800 Gossypium hirsutum HOM05D007427 ORTHO05D006413 6.9e-07 57.8 72 47.2
AT4G29030 Arabidopsis thaliana HOM05D008344 ORTHO05D006413 9.0e-07 57.4 81 49.4
A03p58660 Brassica napus HOM05D008344 ORTHO05D006413 9.0e-07 57.4 80 50.0
BraA03t14927Z Brassica rapa HOM05D008344 ORTHO05D006413 9.0e-07 57.4 80 50.0
MELO3C012793.2 Cucumis melo HOM05D007427 ORTHO05D006413 1.2e-06 57.0 49 59.2
DCAR_012627 Daucus carota HOM05D007427 ORTHO05D006413 1.2e-06 57.0 66 53.0
Hma1.2p1_1858F.1_g305540 Hydrangea macrophylla HOM05D007427 ORTHO05D006413 1.2e-06 57.0 58 53.4
Phvul.007G156700 Phaseolus vulgaris HOM05D007427 ORTHO05D006413 1.2e-06 57.0 65 55.4
Potri.002G252400 Populus trichocarpa HOM05D007427 ORTHO05D006413 1.2e-06 57.0 64 53.1
unitig_22.g6317 Utricularia gibba HOM05D007427 ORTHO05D006413 1.2e-06 57.0 79 48.1
Ca_08774_v3 Cicer arietinum L. HOM05D007427 ORTHO05D006413 1.5e-06 56.6 61 50.8
A01p08960 Brassica napus HOM05D008344 ORTHO05D011034 2.0e-06 56.2 74 50.0
CsaV3_7G025680 Cucumis sativus L. HOM05D007427 ORTHO05D006413 2.0e-06 56.2 58 50.0
FAN15G2923 Fragaria x ananassa HOM05D007427 ORTHO05D006413 2.0e-06 56.2 63 54.0
FAN27G1788 Fragaria x ananassa HOM05D007427 ORTHO05D006413 2.0e-06 56.2 63 54.0
C01p10500 Brassica napus HOM05D008344 ORTHO05D011034 2.6e-06 55.8 74 50.0
BraA01t00842Z Brassica rapa HOM05D008344 ORTHO05D011034 2.6e-06 55.8 74 50.0
FvH4_2g19680 Fragaria vesca HOM05D007427 ORTHO05D006413 2.6e-06 55.8 63 52.4
FAN24G2151 Fragaria x ananassa HOM05D007427 ORTHO05D006413 2.6e-06 55.8 63 52.4
MSTRG.21440 Avicennia marina HOM05D007427 ORTHO05D006413 3.4e-06 55.5 63 46.0
BolC1t01011H Brassica oleracea HOM05D008344 ORTHO05D006413 3.4e-06 55.5 82 46.3
Thhalv10026613m.g Eutrema salsugineum HOM05D008344 ORTHO05D006413 3.4e-06 55.5 80 48.8
Gorai.001G183600 Gossypium raimondii HOM05D007427 ORTHO05D006413 3.4e-06 55.5 85 43.5
Lj1g0008336 Lotus japonicus HOM05D007427 ORTHO05D006413 4.5e-06 55.1 39 66.7
BcaC09g51682 Brassica carinata HOM05D008344 ORTHO05D006413 5.8e-06 54.7 57 57.9
TWI59G1478 Tripterygium wilfordii HOM05D007427 ORTHO05D006413 5.8e-06 54.7 59 47.5
Sp7g26970 Schrenkiella parvula HOM05D008344 ORTHO05D006413 1.0e-05 53.9 76 48.7


User provided reference genes

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