Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G2220 Cannabis sativa HOM05D005610 ORTHO05D006181 1.0e-60 236.5 117 100.0
Prupe.8G114900 Prunus persica HOM05D005610 ORTHO05D006181 6.1e-53 210.7 114 85.1
Prupe.8G115200 Prunus persica HOM05D005610 ORTHO05D006181 2.3e-52 208.8 114 84.2
MD10G1088300 Malus domestica HOM05D005610 ORTHO05D006181 4.0e-52 208.0 114 84.2
Duzib235G0930 Durio zibethinus HOM05D005610 ORTHO05D006181 5.2e-52 207.6 114 85.1
Gohir.A06G152700 Gossypium hirsutum HOM05D005610 ORTHO05D006181 6.7e-52 207.2 114 84.2
Gorai.010G185800 Gossypium raimondii HOM05D005610 ORTHO05D006181 8.8e-52 206.8 114 84.2
Thecc.06G231600 Theobroma cacao HOM05D005610 ORTHO05D006181 1.2e-51 206.5 112 86.6
COL.COLO4_31865 Corchorus olitorius HOM05D005610 ORTHO05D006181 5.7e-51 204.1 112 85.7
Cpa.g.sc152.66 Carica papaya HOM05D005610 ORTHO05D006181 7.5e-51 203.8 114 82.5
Thecc.10G134700 Theobroma cacao HOM05D005610 ORTHO05D006181 2.8e-50 201.8 112 83.0
FAN15G0825 Fragaria x ananassa HOM05D005610 ORTHO05D006181 3.7e-50 201.4 114 83.3
TWI38G1154 Tripterygium wilfordii HOM05D005610 ORTHO05D006181 3.7e-50 201.4 111 84.7
QL10p003579 Quercus lobata HOM05D005610 ORTHO05D006181 6.3e-50 200.7 114 81.6
Dinv13959 Davidia involucrata HOM05D005610 ORTHO05D006181 8.2e-50 200.3 114 83.3
RcHm_v2.0_Chr6g0259461 Rosa chinensis HOM05D005610 ORTHO05D006181 8.2e-50 200.3 114 83.3
Thecc.10G135500 Theobroma cacao HOM05D005610 ORTHO05D006181 8.2e-50 200.3 112 82.1
Haze_06904 Corylus avellana HOM05D005610 ORTHO05D006181 3.1e-49 198.4 111 82.0
FvH4_2g07070 Fragaria vesca HOM05D005610 ORTHO05D006181 3.1e-49 198.4 114 81.6
PGR142G4331 Punica granatum HOM05D005610 ORTHO05D006181 4.1e-49 198.0 114 82.5
Atru.chr1.2482 Acer truncatum HOM05D005610 ORTHO05D006181 5.3e-49 197.6 114 79.8
PGSC0003DMG400023560 Solanum tuberosum HOM05D005610 ORTHO05D006181 5.3e-49 197.6 114 79.8
Duzib160G0112 Durio zibethinus HOM05D005610 ORTHO05D006181 7.0e-49 197.2 114 79.8
Solyc04g014700.4 Solanum lycopersicum HOM05D005610 ORTHO05D006181 9.1e-49 196.8 114 79.8
PSO210G2880 Papaver somniferum HOM05D005610 ORTHO05D006181 1.2e-48 196.4 114 83.3
Actinidia26870 Actinidia chinensis HOM05D005610 ORTHO05D006181 1.6e-48 196.1 115 80.9
CiPaw.10G076800 Carya illinoinensis HOM05D005610 ORTHO05D006181 1.6e-48 196.1 114 81.6
Peaxi162Scf00442g00523 Petunia axillaris HOM05D005610 ORTHO05D006181 2.0e-48 195.7 116 78.4
Ciclev10017234m.g Citrus clementina HOM05D005610 ORTHO05D006181 2.7e-48 195.3 110 82.7
Nitab4.5_0001701g0220 Nicotiana tabacum HOM05D005610 ORTHO05D006181 2.7e-48 195.3 116 77.6
Sopen04g006810 Solanum pennellii HOM05D005610 ORTHO05D006181 2.7e-48 195.3 114 78.9
ClCG01G011300 Citrullus lanatus HOM05D005610 ORTHO05D006181 3.5e-48 194.9 112 81.2
ClCG07G002910 Citrullus lanatus HOM05D005610 ORTHO05D006181 3.5e-48 194.9 111 82.0
MELO3C008876.2 Cucumis melo HOM05D005610 ORTHO05D006181 3.5e-48 194.9 112 81.2
Nitab4.5_0008006g0060 Nicotiana tabacum HOM05D005610 ORTHO05D006181 4.5e-48 194.5 116 77.6
CsaV3_4G031690 Cucumis sativus L. HOM05D005610 ORTHO05D006181 1.0e-47 193.4 112 81.2
Nitab4.5_0018980g0020 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.0e-47 193.4 116 76.7
CAN.G1263.12 Capsicum annuum HOM05D005610 ORTHO05D006181 1.3e-47 193.0 114 78.1
SalBow8G2682 Salvia bowleyana HOM05D005610 ORTHO05D006181 1.7e-47 192.6 111 80.2
Nitab4.5_0001867g0090 Nicotiana tabacum HOM05D005610 ORTHO05D006181 2.2e-47 192.2 116 76.7
TAR624G0514 Trochodendron aralioides HOM05D005610 ORTHO05D006181 3.8e-47 191.4 111 82.9
EL10Ac4g08756 Beta vulgaris HOM05D005610 ORTHO05D006181 5.0e-47 191.0 112 79.5
CARHR075530 Cardamine hirsuta HOM05D005610 ORTHO05D006181 1.1e-46 189.9 114 79.8
PSO302G0046 Papaver somniferum HOM05D005610 ORTHO05D006181 1.1e-46 189.9 114 79.8
Sed0027170 Sechium edule HOM05D005610 ORTHO05D006181 1.1e-46 189.9 110 80.9
vmacro03652 Vaccinium macrocarpon HOM05D005610 ORTHO05D006181 1.5e-46 189.5 113 78.8
Aqoxy4G02780 Aquilegia oxysepala HOM05D005610 ORTHO05D006181 1.9e-46 189.1 112 79.5
Ca_13393_v3 Cicer arietinum L. HOM05D005610 ORTHO05D006181 1.9e-46 189.1 114 78.9
Cc00_g15270 Coffea canephora HOM05D005610 ORTHO05D006181 1.9e-46 189.1 114 77.2
Thhalv10022365m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 2.5e-46 188.7 115 75.7
Cc09_g00980 Coffea canephora HOM05D005610 ORTHO05D006181 3.2e-46 188.3 114 77.2
GSVIVG01008189001 Vitis vinifera HOM05D005610 ORTHO05D006181 4.2e-46 188.0 114 76.3
Aa31LG5G10530 Aethionema arabicum HOM05D005610 ORTHO05D006181 5.5e-46 187.6 114 76.3
ECA238G1057 Erigeron canadensis HOM05D005610 ORTHO05D006181 5.5e-46 187.6 115 75.7
Carub.0003s0067 Capsella rubella HOM05D005610 ORTHO05D006181 1.2e-45 186.4 114 76.3
Oeu054255.1 Olea europaea HOM05D005610 ORTHO05D006181 1.2e-45 186.4 114 77.2
THA.LOC104822382 Tarenaya hassleriana HOM05D005610 ORTHO05D006181 1.6e-45 186.0 117 76.1
BcaC09g47662 Brassica carinata HOM05D005610 ORTHO05D006181 2.1e-45 185.7 114 75.4
CSS0047184 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 2.1e-45 185.7 111 79.3
AT3G01435 Arabidopsis thaliana HOM05D005610 ORTHO05D006181 3.6e-45 184.9 114 75.4
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 3.6e-45 184.9 114 77.2
arahy.Tifrunner.gnm1.ann1.PD4MQY Arachis hypogaea HOM05D005610 ORTHO05D006181 3.6e-45 184.9 114 77.2
Migut.H01600 Erythranthe guttata HOM05D005610 ORTHO05D006181 3.6e-45 184.9 111 75.7
Glyma.19G169600 Glycine max HOM05D005610 ORTHO05D006181 3.6e-45 184.9 114 76.3
Phvul.004G117800 Phaseolus vulgaris HOM05D005610 ORTHO05D006181 3.6e-45 184.9 114 76.3
Sp3g00630 Schrenkiella parvula HOM05D005610 ORTHO05D006181 3.6e-45 184.9 114 74.6
AL3G10740 Arabidopsis lyrata HOM05D005610 ORTHO05D006181 4.7e-45 184.5 114 75.4
HanXRQChr05g0129341 Helianthus annuus HOM05D005610 ORTHO05D006181 4.7e-45 184.5 115 75.7
Hund25163 Selenicereus undatus HOM05D005610 ORTHO05D006181 4.7e-45 184.5 115 75.7
BNapus_Darmor_BZH_scaffold_133p00040 Brassica napus HOM05D005610 ORTHO05D006181 6.1e-45 184.1 114 74.6
BraA01t04664Z Brassica rapa HOM05D005610 ORTHO05D006181 6.1e-45 184.1 114 74.6
AUR62014294 Chenopodium quinoa HOM05D005610 ORTHO05D006181 8.0e-45 183.7 112 75.0
CDE04G2721 Ceratophyllum demersum HOM05D005610 ORTHO05D006181 1.4e-44 183.0 114 72.8
SGA_v2.0_scaffold7G03768 Striga asiatica HOM05D005610 ORTHO05D006181 1.4e-44 183.0 111 74.8
Eucgr.B02596 Eucalyptus grandis HOM05D005610 ORTHO05D006181 3.0e-44 181.8 111 77.5
Glyma.03G168300 Glycine max HOM05D005610 ORTHO05D006181 3.0e-44 181.8 111 76.6
Lj4g0017663 Lotus japonicus HOM05D005610 ORTHO05D006181 3.0e-44 181.8 114 75.4
Lj5g0020791 Lotus japonicus HOM05D005610 ORTHO05D006181 3.0e-44 181.8 114 75.4
Medtr1g023330 Medicago truncatula HOM05D005610 ORTHO05D006181 5.2e-44 181.0 114 74.6
AUR62034142 Chenopodium quinoa HOM05D005610 ORTHO05D006181 6.8e-44 180.6 109 75.2
SGA_v2.0_scaffold4G01884 Striga asiatica HOM05D005610 ORTHO05D006181 1.2e-43 179.9 111 73.9
Sabra04G0000600 Salix brachista HOM05D005610 ORTHO05D006181 2.0e-43 179.1 108 78.7
MSTRG.13119 Avicennia marina HOM05D005610 ORTHO05D006181 2.6e-43 178.7 111 74.8
Manes.16G001300 Manihot esculenta HOM05D005610 ORTHO05D006181 3.4e-43 178.3 112 75.0
Lalb_Chr04g0257231 Lupinus albus HOM05D005610 ORTHO05D006181 5.7e-43 177.6 113 75.2
Nn8g38603 Nelumbo nucifera HOM05D005610 ORTHO05D006181 9.8e-43 176.8 111 78.4
Medtr8g106470 Medicago truncatula HOM05D005610 ORTHO05D006181 1.7e-42 176.0 114 73.7
Potri.004G001600 Populus trichocarpa HOM05D005610 ORTHO05D006181 2.2e-42 175.6 108 76.9
A05p44570 Brassica napus HOM05D005610 ORTHO05D006181 2.8e-42 175.3 114 72.8
BraA05t23199Z Brassica rapa HOM05D005610 ORTHO05D006181 2.8e-42 175.3 114 72.8
Thhalv10022907m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 3.7e-42 174.9 129 65.1
Oeu052223.1 Olea europaea HOM05D005610 ORTHO05D006181 1.4e-41 172.9 114 71.1
BolC1t05956H Brassica oleracea HOM05D005610 ORTHO05D006181 3.1e-41 171.8 135 63.0
Lj6g0026774 Lotus japonicus HOM05D005610 ORTHO05D006181 3.1e-41 171.8 113 70.8
BolC5t35148H Brassica oleracea HOM05D005610 ORTHO05D006181 7.0e-41 170.6 114 71.1
VMungo0464G1641 Vigna mungo HOM05D005610 ORTHO05D006181 1.6e-40 169.5 138 62.3
C09p75160 Brassica napus HOM05D005610 ORTHO05D006181 7.7e-40 167.2 114 70.2
unitig_748.g7924 Utricularia gibba HOM05D000772 ORTHO05D006181 1.3e-39 166.4 110 69.1
ATR1153G018 Amborella trichopoda HOM05D005610 ORTHO05D006181 6.6e-39 164.1 108 70.4
Gohir.D06G159100 Gossypium hirsutum HOM05D005610 ORTHO05D006181 1.6e-37 159.5 84 82.1
Ah.06g187910 Amaranthus hybridus HOM05D005610 ORTHO05D006181 4.7e-37 157.9 99 71.7
ATR0723G088 Amborella trichopoda HOM05D005610 ORTHO05D006181 4.7e-37 157.9 108 68.5
Zm00001eb234830 Zea mays HOM05D005610 ORTHO05D006181 4.7e-37 157.9 109 68.8
Lsat_1_v5_gn_7_13401 Lactuca sativa HOM05D005610 ORTHO05D006181 6.8e-36 154.1 97 71.1
HPP92_003728 Vanilla planifolia HOM05D005610 ORTHO05D006181 2.0e-35 152.5 108 66.7
FAN24G2055 Fragaria x ananassa HOM05D005610 ORTHO05D006181 2.2e-34 149.1 84 78.6
Os02g0189100 Oryza sativa ssp. japonica HOM05D005610 ORTHO05D006181 6.3e-34 147.5 107 64.5
SEGI_23772 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 9.2e-33 143.7 109 67.0
MBI19_g29445_MAGBIO Magnolia biondii HOM05D005610 ORTHO05D006181 1.6e-32 142.9 132 56.1
Zm00001eb206370 Zea mays HOM05D005610 ORTHO05D006181 1.6e-32 142.9 101 68.3
CSS0025052 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 6.6e-31 137.5 81 75.3
Psat6g005240 Pisum sativum HOM05D005610 ORTHO05D006181 1.1e-30 136.7 84 78.6
TAR626G0207 Trochodendron aralioides HOM05D005610 ORTHO05D006181 1.5e-30 136.3 177 46.3
Dinv29757 Davidia involucrata HOM05D005610 ORTHO05D006181 3.3e-30 135.2 87 77.0
Thecc.10G135300 Theobroma cacao HOM05D005610 ORTHO05D006181 1.2e-27 126.7 70 87.1
HanXRQChr15g0470051 Helianthus annuus HOM05D005610 ORTHO05D006181 2.0e-27 125.9 88 64.8
BNapus_Darmor_BZH_scaffold_119p00050 Brassica napus HOM05D005610 ORTHO05D006181 9.8e-27 123.6 75 77.3
BNapus_Darmor_BZH_scaffold_97p00380 Brassica napus HOM05D005610 ORTHO05D006181 9.8e-27 123.6 75 77.3
SMO200G0153 Selaginella moellendorffii HOM05D005610 ORTHO05D006181 2.2e-26 122.5 112 50.9
FAN27G3428 Fragaria x ananassa HOM05D005610 ORTHO05D006181 8.3e-26 120.6 74 74.3
Mapoly0014s0199 Marchantia polymorpha HOM05D005610 ORTHO05D006181 8.3e-26 120.6 105 54.3
Pp3c10_18150 Physcomitrium patens HOM05D005610 ORTHO05D006181 8.3e-26 120.6 107 52.3
Actinidia02323 Actinidia chinensis HOM05D005610 ORTHO05D006181 1.4e-25 119.8 67 82.1
Eucgr.K02585 Eucalyptus grandis HOM05D005610 ORTHO05D006181 9.2e-25 117.1 70 78.6
Zm00001eb004040 Zea mays HOM05D005610 ORTHO05D006181 2.3e-23 112.5 72 69.4
FAN20G1916 Fragaria x ananassa HOM05D005610 ORTHO05D006181 2.8e-21 105.5 57 82.5
CBR_g27782 Chara braunii HOM05D005610 ORTHO05D001468 6.2e-21 104.4 112 50.0
Rhsim13G0147700 Rhododendron simsii HOM05D005610 ORTHO05D006181 8.9e-20 100.5 61 80.3
AagrBONN_evm.TU.Sc2ySwM_228.3334 Anthoceros agrestis HOM05D005610 ORTHO05D006181 5.8e-19 97.8 96 44.8
TPR.G7342 Trifolium pratense HOM05D005610 ORTHO05D006181 4.9e-18 94.7 57 73.7
Pp3c3_34050 Physcomitrium patens HOM05D005610 ORTHO05D006181 3.2e-17 92.0 78 56.4
RcHm_v2.0_Chr7g0240711 Rosa chinensis HOM05D005610 ORTHO05D006181 1.3e-15 86.7 43 88.4
RcHm_v2.0_Chr7g0240721 Rosa chinensis HOM05D005610 ORTHO05D006181 1.3e-15 86.7 50 84.0
Sc16g0007910 Simmondsia chinensis HOM05D005610 ORTHO05D006181 2.3e-15 85.9 54 75.9
SEGI_27415 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 1.2e-08 63.5 60 51.7
CARHR125830 Cardamine hirsuta HOM05D005610 ORTHO05D006181 1.3e-07 60.1 38 65.8
Migut.M01383 Erythranthe guttata HOM05D005610 ORTHO05D006181 1.3e-07 60.1 58 46.6
CiPaw.09G101200 Carya illinoinensis HOM05D005610 ORTHO05D006181 1.1e-06 57.0 37 67.6


User provided reference genes

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