Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G2170 Cannabis sativa HOM05D006923 ORTHO05D008697 2.3e-165 585.5 290 100.0
QL03p067501 Quercus lobata HOM05D006923 ORTHO05D008697 2.7e-110 402.5 306 69.6
MD13G1084200 Malus domestica HOM05D006923 ORTHO05D008697 5.1e-109 398.3 301 69.1
GSVIVG01020133001 Vitis vinifera HOM05D006923 ORTHO05D008697 2.1e-107 392.9 302 68.2
COL.COLO4_36266 Corchorus olitorius HOM05D006923 ORTHO05D008697 5.0e-104 381.7 292 69.5
RcHm_v2.0_Chr4g0444951 Rosa chinensis HOM05D006923 ORTHO05D008697 1.9e-103 379.8 297 69.4
TAR629G1985 Trochodendron aralioides HOM05D006923 ORTHO05D008697 1.9e-103 379.8 301 67.4
Cpa.g.sc5.315 Carica papaya HOM05D006923 ORTHO05D008697 6.1e-102 374.8 288 69.8
CiPaw.06G077400 Carya illinoinensis HOM05D006923 ORTHO05D008697 1.0e-101 374.0 296 67.6
ClCG05G024880 Citrullus lanatus HOM05D006923 ORTHO05D008697 1.3e-101 373.6 292 67.5
Sed0028145 Sechium edule HOM05D006923 ORTHO05D008697 3.0e-101 372.5 293 67.2
Manes.05G093700 Manihot esculenta HOM05D006923 ORTHO05D008697 3.9e-101 372.1 302 68.2
Dinv31139 Davidia involucrata HOM05D006923 ORTHO05D008697 1.1e-100 370.5 300 68.3
Nn4g22963 Nelumbo nucifera HOM05D006923 ORTHO05D008697 3.3e-100 369.0 302 64.2
Actinidia24653 Actinidia chinensis HOM05D006923 ORTHO05D008697 4.3e-100 368.6 299 65.9
Cfa009080 Carpinus fangiana HOM05D006923 ORTHO05D008697 4.3e-100 368.6 257 73.9
Ciclev10032274m.g Citrus clementina HOM05D006923 ORTHO05D008697 4.3e-100 368.6 300 66.7
Atru.chr11.1922 Acer truncatum HOM05D006923 ORTHO05D008697 2.2e-99 366.3 304 65.8
FAN07G0582 Fragaria x ananassa HOM05D006923 ORTHO05D008697 2.2e-99 366.3 296 67.2
vmacro16302 Vaccinium macrocarpon HOM05D006923 ORTHO05D008697 2.2e-99 366.3 288 67.7
FAN22G1061 Fragaria x ananassa HOM05D006923 ORTHO05D008697 3.7e-99 365.5 296 67.2
Sopen04g001110 Solanum pennellii HOM05D006923 ORTHO05D008697 3.7e-99 365.5 290 67.2
Prupe.1G262600 Prunus persica HOM05D006923 ORTHO05D008697 4.8e-99 365.2 272 71.3
Gorai.009G345900 Gossypium raimondii HOM05D006923 ORTHO05D008697 8.2e-99 364.4 289 66.4
Lj6C798T8 Lonicera japonica HOM05D006923 ORTHO05D008697 1.1e-98 364.0 303 63.0
FvH4_4g35320 Fragaria vesca HOM05D006923 ORTHO05D008697 1.4e-98 363.6 296 66.6
Gohir.A05G320000 Gossypium hirsutum HOM05D006923 ORTHO05D008697 1.4e-98 363.6 289 67.1
FAN12G2795 Fragaria x ananassa HOM05D006923 ORTHO05D008697 2.4e-98 362.8 296 66.6
PGSC0003DMG400001928 Solanum tuberosum HOM05D006923 ORTHO05D008697 4.1e-98 362.1 288 66.0
PGR102G0681 Punica granatum HOM05D006923 ORTHO05D008697 5.3e-98 361.7 292 65.4
Thecc.02G238100 Theobroma cacao HOM05D006923 ORTHO05D008697 2.0e-97 359.8 289 66.4
Hund25304 Selenicereus undatus HOM05D006923 ORTHO05D008697 2.6e-97 359.4 302 62.9
Gohir.D05G322300 Gossypium hirsutum HOM05D006923 ORTHO05D008697 3.4e-97 359.0 288 66.0
MSTRG.649 Avicennia marina HOM05D006923 ORTHO05D008697 4.5e-97 358.6 300 64.3
CSS0003222 Camellia sinensis var. sinensis HOM05D006923 ORTHO05D008697 4.5e-97 358.6 282 67.7
Solyc04g005090.4 Solanum lycopersicum HOM05D006923 ORTHO05D008697 5.9e-97 358.2 290 65.9
Aqoxy3G03167 Aquilegia oxysepala HOM05D006923 ORTHO05D008697 7.7e-97 357.8 282 68.8
AUR62039449 Chenopodium quinoa HOM05D006923 ORTHO05D008697 1.3e-96 357.1 269 70.6
Migut.L01372 Erythranthe guttata HOM05D006923 ORTHO05D008697 3.8e-96 355.5 288 67.7
TPR.G26715 Trifolium pratense HOM05D006923 ORTHO05D008697 5.5e-95 351.7 255 70.6
Carub.0002s0542 Capsella rubella HOM05D006923 ORTHO05D008697 9.4e-95 350.9 296 63.2
Lj2g0018338 Lotus japonicus HOM05D006923 ORTHO05D008697 1.2e-94 350.5 256 70.7
AL2G16930 Arabidopsis lyrata HOM05D006923 ORTHO05D008697 1.6e-94 350.1 293 64.5
Thhalv10023990m.g Eutrema salsugineum HOM05D006923 ORTHO05D008697 1.6e-94 350.1 279 66.3
PSO591G0274 Papaver somniferum HOM05D006923 ORTHO05D008697 1.6e-94 350.1 292 63.4
THA.LOC104819679 Tarenaya hassleriana HOM05D006923 ORTHO05D008697 1.6e-94 350.1 288 63.9
CAN.G25.5 Capsicum annuum HOM05D006923 ORTHO05D008697 2.7e-94 349.4 293 63.8
SGA_v2.0_scaffold166G38306 Striga asiatica HOM05D006923 ORTHO05D008697 4.6e-94 348.6 273 68.1
EL10Ac6g13089 Beta vulgaris HOM05D006923 ORTHO05D008697 7.9e-94 347.8 306 63.7
HanXRQChr09g0267151 Helianthus annuus HOM05D006923 ORTHO05D008697 7.9e-94 347.8 289 64.4
Potri.008G191900 Populus trichocarpa HOM05D006923 ORTHO05D008697 1.0e-93 347.4 303 63.4
Peaxi162Scf00266g00035 Petunia axillaris HOM05D006923 ORTHO05D008697 1.4e-93 347.1 241 71.8
Aa31LG2G10350 Aethionema arabicum HOM05D006923 ORTHO05D008697 2.3e-93 346.3 290 62.8
Rhsim12G0127000 Rhododendron simsii HOM05D006923 ORTHO05D008697 2.3e-93 346.3 303 60.7
AT1G59840 Arabidopsis thaliana HOM05D006923 ORTHO05D008697 3.0e-93 345.9 291 64.3
Lalb_Chr16g0382621 Lupinus albus HOM05D006923 ORTHO05D008697 3.9e-93 345.5 303 63.4
Sp2g04730 Schrenkiella parvula HOM05D006923 ORTHO05D008697 3.9e-93 345.5 289 64.4
Cc11_g13930 Coffea canephora HOM05D006923 ORTHO05D008697 8.8e-93 344.4 298 63.4
Ca_05074_v3 Cicer arietinum L. HOM05D006923 ORTHO05D008697 2.0e-92 343.2 298 61.7
Glyma.02G026400 Glycine max HOM05D006923 ORTHO05D008697 4.4e-92 342.0 294 64.3
BolC1t03615H Brassica oleracea HOM05D006923 ORTHO05D008697 9.7e-92 340.9 298 62.8
arahy.Tifrunner.gnm1.ann1.EW3DBQ Arachis hypogaea HOM05D006923 ORTHO05D008697 1.7e-91 340.1 301 61.8
Phvul.002G078400 Phaseolus vulgaris HOM05D006923 ORTHO05D008697 2.8e-91 339.3 262 67.9
unitig_26.g10329 Utricularia gibba HOM05D006923 ORTHO05D008697 3.7e-91 339.0 296 62.2
Psat2g114680 Pisum sativum HOM05D006923 ORTHO05D008697 6.3e-91 338.2 293 63.1
BcaC09g49455 Brassica carinata HOM05D006923 ORTHO05D008697 1.4e-90 337.0 307 61.2
CsaV3_5G032010 Cucumis sativus L. HOM05D006923 ORTHO05D008697 1.8e-90 336.7 277 66.4
C01p36540 Brassica napus HOM05D006923 ORTHO05D008697 1.3e-88 330.5 318 59.4
BcaB04g20234 Brassica carinata HOM05D006923 ORTHO05D008697 2.9e-88 329.3 259 66.0
arahy.Tifrunner.gnm1.ann1.NUE0XS Arachis hypogaea HOM05D006923 ORTHO05D008697 3.8e-88 328.9 285 62.1
SalBow2G1484 Salvia bowleyana HOM05D006923 ORTHO05D008697 3.8e-88 328.9 299 60.9
SalBow2G2758 Salvia bowleyana HOM05D006923 ORTHO05D008697 3.8e-88 328.9 299 60.9
Aa31LG1G14870 Aethionema arabicum HOM05D006923 ORTHO05D008697 4.2e-87 325.5 266 64.3
CSS0013336 Camellia sinensis var. sinensis HOM05D006923 ORTHO05D008697 4.2e-87 325.5 238 71.0
TWI18G0575 Tripterygium wilfordii HOM05D006923 ORTHO05D008697 2.7e-86 322.8 292 63.4
ECA246G0266 Erigeron canadensis HOM05D000793 ORTHO05D000783 6.1e-86 321.6 295 60.0
BcaC06g31796 Brassica carinata HOM05D006923 ORTHO05D008697 5.7e-84 315.1 242 66.5
CDE04G0355 Ceratophyllum demersum HOM05D006923 ORTHO05D008697 5.7e-84 315.1 273 58.2
Sc11g0001490 Simmondsia chinensis HOM05D006923 ORTHO05D008697 2.2e-83 313.2 275 62.5
A01p28870 Brassica napus HOM05D006923 ORTHO05D008697 6.3e-83 311.6 273 62.6
BraA01t03022Z Brassica rapa HOM05D006923 ORTHO05D008697 1.2e-81 307.4 273 62.3
Nitab4.5_0005168g0020 Nicotiana tabacum HOM05D006923 ORTHO05D008697 3.5e-81 305.8 292 60.6
BcaNung06340 Brassica carinata HOM05D006923 ORTHO05D008697 1.5e-79 300.4 241 65.1
HPP92_026426 Vanilla planifolia HOM05D006923 ORTHO05D008697 5.5e-79 298.5 263 61.2
Os04g0650500 Oryza sativa ssp. japonica HOM05D006923 ORTHO05D008697 1.6e-78 297.0 250 61.6
Sabra08G0145400 Salix brachista HOM05D006923 ORTHO05D008697 3.6e-78 295.8 225 68.9
ATR0624G013 Amborella trichopoda HOM05D006923 ORTHO05D008697 3.0e-77 292.7 271 57.9
MELO3C012038.2 Cucumis melo HOM05D006923 ORTHO05D008697 3.0e-77 292.7 248 65.3
Duzib268G0289 Durio zibethinus HOM05D006923 ORTHO05D008697 6.7e-77 291.6 281 58.0
Lsat_1_v5_gn_7_91800 Lactuca sativa HOM05D006923 ORTHO05D008697 2.6e-76 289.7 261 61.3
Zm00001eb068300 Zea mays HOM05D006923 ORTHO05D008697 2.8e-75 286.2 234 63.2
Haze_12112 Corylus avellana HOM05D006923 ORTHO05D008697 1.6e-73 280.4 202 72.3
Medtr5g037050 Medicago truncatula HOM05D006923 ORTHO05D008697 7.2e-71 271.6 266 57.1
AUR62026532 Chenopodium quinoa HOM05D006923 ORTHO05D008697 1.8e-69 266.9 249 59.8
VMungo1215G1603 Vigna mungo HOM05D006923 ORTHO05D008697 5.2e-69 265.4 243 61.3
FAN17G2763 Fragaria x ananassa HOM05D006923 ORTHO05D008697 2.7e-65 253.1 284 53.2
CARHR053250 Cardamine hirsuta HOM05D006923 ORTHO05D008697 1.3e-64 250.8 188 68.1
Pp3c3_23340 Physcomitrium patens HOM05D006923 ORTHO05D008697 5.0e-56 222.2 244 50.4
Mapoly0001s0231 Marchantia polymorpha HOM05D006923 ORTHO05D008697 2.3e-53 213.4 233 50.6
CBR_g3926 Chara braunii HOM05D006923 ORTHO05D008697 4.1e-50 202.6 227 44.9
MBI17_g35870_MAGBIO Magnolia biondii HOM05D006923 ORTHO05D008697 5.6e-47 192.2 132 72.0
MCO16G195 Micromonas commoda HOM05D006923 ORTHO05D008697 1.3e-40 171.0 237 41.8
Nitab4.5_0001908g0040 Nicotiana tabacum HOM05D006923 ORTHO05D008697 3.9e-40 169.5 240 44.6
Cre08.g382300 Chlamydomonas reinhardtii HOM05D006923 ORTHO05D008697 3.4e-36 156.4 230 38.3
PSO832G3782 Papaver somniferum HOM05D006923 ORTHO05D008697 2.3e-32 143.7 92 77.2
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 1.6e-30 137.5 244 34.8
Sed0022420 Sechium edule HOM05D006923 ORTHO05D008697 2.1e-30 137.1 214 42.1
SEGI_22816 Sequoiadendron giganteum HOM05D006923 ORTHO05D008697 7.8e-25 118.6 84 63.1
MBI17_g35869_MAGBIO Magnolia biondii HOM05D006923 ORTHO05D008697 1.7e-19 100.9 102 56.9
AagrBONN_evm.TU.Sc2ySwM_117.4092 Anthoceros agrestis HOM05D006923 ORTHO05D008697 3.1e-13 80.1 120 41.7
VMungo1215G3051 Vigna mungo HOM05D006923 ORTHO05D008697 1.5e-12 77.8 43 81.4
Hma1.2p1_0289F.1_g114510 Hydrangea macrophylla HOM05D006923 ORTHO05D008697 3.4e-12 76.6 61 62.3
SEGI_22360 Sequoiadendron giganteum HOM05D006923 ORTHO05D008697 9.3e-10 68.6 54 55.6
A07p27760 Brassica napus HOM05D006923 ORTHO05D024228 1.6e-09 67.8 70 52.9
BraA07t30415Z Brassica rapa HOM05D006923 ORTHO05D024228 1.6e-09 67.8 70 52.9
BraA08t33759Z Brassica rapa HOM05D020796 ORTHO05D024228 4.6e-09 66.2 70 51.4
Rhsim13G0125100 Rhododendron simsii HOM05D000017 ORTHO05D000013 4.3e-07 59.7 53 52.8
CiPaw.05G144000 Carya illinoinensis HOM05D006923 ORTHO05D008697 6.2e-06 55.8 99 40.4


User provided reference genes

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