Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G2167 Cannabis sativa HOM05D006846 ORTHO05D008473 4.1e-75 284.6 144 100.0
QL06p041421 Quercus lobata HOM05D006846 ORTHO05D008473 9.8e-45 183.7 148 64.9
Prupe.1G108100 Prunus persica HOM05D006846 ORTHO05D008473 2.1e-42 176.0 156 62.2
CiPaw.01G161800 Carya illinoinensis HOM05D006846 ORTHO05D008473 3.5e-42 175.3 123 70.7
CsaV3_4G025810 Cucumis sativus L. HOM05D006846 ORTHO05D008473 3.5e-42 175.3 125 68.0
MELO3C003207.2 Cucumis melo HOM05D006846 ORTHO05D008473 4.6e-42 174.9 123 68.3
Nitab4.5_0007474g0050 Nicotiana tabacum HOM05D006846 ORTHO05D008473 4.6e-42 174.9 134 68.7
GSVIVG01017604001 Vitis vinifera HOM05D006846 ORTHO05D008473 2.3e-41 172.6 140 63.6
GSVIVG01017661001 Vitis vinifera HOM05D006846 ORTHO05D008473 2.3e-41 172.6 140 63.6
BolC6t35393H Brassica oleracea HOM05D006846 ORTHO05D008473 3.0e-41 172.2 127 67.7
Migut.H02019 Erythranthe guttata HOM05D006846 ORTHO05D008473 3.0e-41 172.2 137 63.5
Carub.0001s3726 Capsella rubella HOM05D003832 ORTHO05D004365 3.9e-41 171.8 130 66.2
Eucgr.H04110 Eucalyptus grandis HOM05D006846 ORTHO05D008473 3.9e-41 171.8 130 65.4
BcaC08g43012 Brassica carinata HOM05D006846 ORTHO05D008473 5.0e-41 171.4 127 67.7
C06p02670 Brassica napus HOM05D006846 ORTHO05D008473 5.0e-41 171.4 127 67.7
Sed0003831 Sechium edule HOM05D006846 ORTHO05D008473 1.1e-40 170.2 123 68.3
Thecc.04G310600 Theobroma cacao HOM05D006846 ORTHO05D008473 1.1e-40 170.2 133 63.9
Carub.0005s0005 Capsella rubella HOM05D006846 ORTHO05D008473 1.5e-40 169.9 128 67.2
Nitab4.5_0007368g0030 Nicotiana tabacum HOM05D006846 ORTHO05D008473 1.5e-40 169.9 147 61.2
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 1.9e-40 169.5 125 69.6
A06p04640 Brassica napus HOM05D006846 ORTHO05D008473 2.5e-40 169.1 124 67.7
BraA06t23668Z Brassica rapa HOM05D006846 ORTHO05D008473 2.5e-40 169.1 124 67.7
Lj6A699T67 Lonicera japonica HOM05D006846 ORTHO05D008473 2.5e-40 169.1 139 62.6
Sp3g23740 Schrenkiella parvula HOM05D006846 ORTHO05D008473 2.5e-40 169.1 128 64.8
AT1G48170 Arabidopsis thaliana HOM05D006846 ORTHO05D008473 3.3e-40 168.7 131 67.2
CARHR037810 Cardamine hirsuta HOM05D006846 ORTHO05D008473 3.3e-40 168.7 129 65.9
Thhalv10012405m.g Eutrema salsugineum HOM05D006846 ORTHO05D008473 4.3e-40 168.3 118 72.0
Hma1.2p1_0013F.1_g007970 Hydrangea macrophylla HOM05D006846 ORTHO05D008473 4.3e-40 168.3 117 72.6
MD13G1143600 Malus domestica HOM05D006846 ORTHO05D008473 4.3e-40 168.3 156 59.0
Aqoxy1G00358 Aquilegia oxysepala HOM05D006846 ORTHO05D008473 7.3e-40 167.5 127 66.9
Solyc06g053470.3 Solanum lycopersicum HOM05D006846 ORTHO05D008473 9.5e-40 167.2 132 66.7
Sopen06g018550 Solanum pennellii HOM05D006846 ORTHO05D008473 9.5e-40 167.2 132 66.7
THA.LOC104821808 Tarenaya hassleriana HOM05D006846 ORTHO05D008473 1.2e-39 166.8 129 63.6
AL1G54740 Arabidopsis lyrata HOM05D006846 ORTHO05D008473 2.1e-39 166.0 120 70.0
Potri.008G099700 Populus trichocarpa HOM05D006846 ORTHO05D008473 2.1e-39 166.0 148 60.1
PGSC0003DMG400016299 Solanum tuberosum HOM05D006846 ORTHO05D008473 2.8e-39 165.6 145 60.0
CARHR290870 Cardamine hirsuta HOM05D006846 ORTHO05D008473 3.6e-39 165.2 117 70.9
BcaB07g33786 Brassica carinata HOM05D006846 ORTHO05D008473 4.7e-39 164.9 127 66.1
PSO339G5299 Papaver somniferum HOM05D006846 ORTHO05D008473 6.2e-39 164.5 127 65.4
Hund16859 Selenicereus undatus HOM05D006846 ORTHO05D008473 8.1e-39 164.1 135 62.2
RcHm_v2.0_Chr4g0426881 Rosa chinensis HOM05D006846 ORTHO05D008473 1.1e-38 163.7 152 59.2
Medtr2g046100 Medicago truncatula HOM05D006846 ORTHO05D008473 1.4e-38 163.3 120 68.3
Rhsim04G0247300 Rhododendron simsii HOM05D006846 ORTHO05D008473 1.4e-38 163.3 147 59.9
Duzib212G0339 Durio zibethinus HOM05D006846 ORTHO05D008473 4.0e-38 161.8 126 66.7
Manes.03G210800 Manihot esculenta HOM05D006846 ORTHO05D008473 4.0e-38 161.8 133 63.2
PSO384G1587 Papaver somniferum HOM05D006846 ORTHO05D008473 4.0e-38 161.8 127 64.6
FAN07G1325 Fragaria x ananassa HOM05D006846 ORTHO05D008473 5.2e-38 161.4 149 57.7
Lj6g0016026 Lotus japonicus HOM05D006846 ORTHO05D008473 5.2e-38 161.4 134 61.9
Sc23g0000700 Simmondsia chinensis HOM05D006846 ORTHO05D008473 8.9e-38 160.6 134 59.0
Sabra08G0075400 Salix brachista HOM05D006846 ORTHO05D008473 1.2e-37 160.2 156 57.7
FvH4_4g21260 Fragaria vesca HOM05D006846 ORTHO05D008473 2.0e-37 159.5 149 57.0
PGR004G1594 Punica granatum HOM05D006846 ORTHO05D008473 2.0e-37 159.5 144 55.6
PGR033G0007 Punica granatum HOM05D006846 ORTHO05D008473 2.0e-37 159.5 144 55.6
Os12g0182800 Oryza sativa ssp. japonica HOM05D006846 ORTHO05D008473 2.6e-37 159.1 134 58.2
MSTRG.14213 Avicennia marina HOM05D006846 ORTHO05D008473 4.4e-37 158.3 125 63.2
Peaxi162Scf00579g00010 Petunia axillaris HOM05D006846 ORTHO05D008473 4.4e-37 158.3 130 62.3
CDE12G0609 Ceratophyllum demersum HOM05D006846 ORTHO05D008473 5.8e-37 157.9 137 59.1
SGA_v2.0_scaffold127G34033 Striga asiatica HOM05D006846 ORTHO05D008473 5.8e-37 157.9 136 58.1
vmacro08003 Vaccinium macrocarpon HOM05D006846 ORTHO05D008473 5.8e-37 157.9 176 52.3
Aa31LG10G5560 Aethionema arabicum HOM05D006846 ORTHO05D008473 7.5e-37 157.5 121 67.8
Lalb_Chr07g0181811 Lupinus albus HOM05D006846 ORTHO05D008473 7.5e-37 157.5 126 62.7
Psat1g017720 Pisum sativum HOM05D006846 ORTHO05D008473 9.9e-37 157.1 131 59.5
Cfa015953 Carpinus fangiana HOM05D006846 ORTHO05D008473 1.3e-36 156.8 161 53.4
Gohir.D09G242700 Gossypium hirsutum HOM05D006846 ORTHO05D008473 1.3e-36 156.8 139 59.0
Gorai.006G266400 Gossypium raimondii HOM05D006846 ORTHO05D008473 1.3e-36 156.8 139 59.0
CAN.G136.4 Capsicum annuum HOM05D006846 ORTHO05D008473 1.7e-36 156.4 141 56.7
Ciclev10007018m.g Citrus clementina HOM05D006846 ORTHO05D008473 2.2e-36 156.0 119 66.4
arahy.Tifrunner.gnm1.ann1.BIT0EB Arachis hypogaea HOM05D006846 ORTHO05D008473 3.7e-36 155.2 114 66.7
VMungo1309G3101 Vigna mungo HOM05D006846 ORTHO05D008473 3.7e-36 155.2 132 61.4
Phvul.009G219800 Phaseolus vulgaris HOM05D006846 ORTHO05D008473 4.9e-36 154.8 121 65.3
Zm00001eb359370 Zea mays HOM05D006846 ORTHO05D008473 4.9e-36 154.8 114 65.8
Glyma.15G188800 Glycine max HOM05D006846 ORTHO05D008473 6.4e-36 154.5 121 65.3
MBI11_g10320_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 1.1e-35 153.7 122 63.9
SEGI_09291 Sequoiadendron giganteum HOM05D006846 ORTHO05D008473 1.9e-35 152.9 144 54.9
AUR62027881 Chenopodium quinoa HOM05D006846 ORTHO05D008473 7.1e-35 151.0 123 61.0
Ca_02363_v3 Cicer arietinum L. HOM05D006846 ORTHO05D008473 7.1e-35 151.0 143 55.2
SGA_v2.0_scaffold127G34034 Striga asiatica HOM05D006846 ORTHO05D008473 7.1e-35 151.0 145 56.6
HanXRQChr09g0246471 Helianthus annuus HOM05D006846 ORTHO05D008473 9.2e-35 150.6 123 63.4
ECA233G5003 Erigeron canadensis HOM05D006846 ORTHO05D008473 1.2e-34 150.2 121 62.0
FAN12G0803 Fragaria x ananassa HOM05D006846 ORTHO05D008473 1.6e-34 149.8 174 50.0
AUR62019042 Chenopodium quinoa HOM05D006846 ORTHO05D008473 2.1e-34 149.4 122 59.8
SGA_v2.0_scaffold64G22040 Striga asiatica HOM05D006846 ORTHO05D008473 1.0e-33 147.1 163 50.3
EL10Ac1g01060 Beta vulgaris HOM05D006846 ORTHO05D008473 1.3e-33 146.7 123 60.2
Dinv29523 Davidia involucrata HOM05D006846 ORTHO05D008473 3.0e-33 145.6 102 71.6
TWI73G0996 Tripterygium wilfordii HOM05D006846 ORTHO05D008473 2.8e-31 139.0 132 56.8
SalBow8G5328 Salvia bowleyana HOM05D006846 ORTHO05D008473 8.1e-31 137.5 154 50.6
MD16G1146600 Malus domestica HOM05D006846 ORTHO05D008473 5.2e-30 134.8 153 52.3
unitig_744.g24645 Utricularia gibba HOM05D006846 ORTHO05D008473 6.8e-30 134.4 124 55.6
Cc03_g00240 Coffea canephora HOM05D006846 ORTHO05D008473 1.5e-29 133.3 99 66.7
QL11p040346 Quercus lobata HOM05D006846 ORTHO05D008473 2.6e-29 132.5 148 52.7
Haze_00535 Corylus avellana HOM05D006846 ORTHO05D008473 1.4e-27 126.7 161 47.2
COL.COLO4_34545 Corchorus olitorius HOM05D005582 ORTHO05D007028 1.9e-27 126.3 93 68.8
Pp3c9_17660 Physcomitrium patens HOM05D006846 ORTHO05D008473 1.9e-27 126.3 130 49.2
Haze_00536 Corylus avellana HOM05D006846 ORTHO05D008473 2.4e-27 125.9 161 47.2
TPR.G27493 Trifolium pratense HOM05D006846 ORTHO05D008473 6.0e-26 121.3 95 62.1
Nn4g26496 Nelumbo nucifera HOM05D006846 ORTHO05D008473 3.0e-25 119.0 139 49.6
Mapoly0021s0070 Marchantia polymorpha HOM05D006846 ORTHO05D008473 4.3e-24 115.2 127 44.1
Dinv29521 Davidia involucrata HOM05D006846 ORTHO05D008473 1.1e-22 110.5 103 57.3
Lsat_1_v5_gn_6_71441 Lactuca sativa HOM05D006846 ORTHO05D008473 1.8e-22 109.8 135 45.9
HPP92_004479 Vanilla planifolia HOM05D006846 ORTHO05D008473 6.9e-22 107.8 90 60.0
TAR365G0638 Trochodendron aralioides HOM05D006846 ORTHO05D008473 1.2e-21 107.1 91 61.5
arahy.Tifrunner.gnm1.ann1.EYUN0W Arachis hypogaea HOM05D000385 ORTHO05D000269 1.5e-21 106.7 140 42.9
MBI18_g09611_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 3.4e-21 105.5 107 52.3
Gohir.A09G242000 Gossypium hirsutum HOM05D006846 ORTHO05D008473 4.4e-21 105.1 139 43.9
CSS0050245 Camellia sinensis var. sinensis HOM05D006846 ORTHO05D008473 1.9e-19 99.8 78 67.9
ATR0693G432 Amborella trichopoda HOM05D006846 ORTHO05D008473 1.0e-17 94.0 79 55.7
ClCG04G007450 Citrullus lanatus HOM05D006846 ORTHO05D008473 1.3e-17 93.6 73 65.8
Glyma.09G078800 Glycine max HOM05D006846 ORTHO05D008473 1.3e-15 87.0 62 69.4
Hma1.2p1_0013F.1_g007960 Hydrangea macrophylla HOM05D006846 ORTHO05D008473 2.6e-13 79.3 50 72.0
Zm00001eb158200 Zea mays HOM05D006846 ORTHO05D008473 3.4e-13 79.0 64 53.1
Cpa.g.sc146.38 Carica papaya HOM05D006846 ORTHO05D008473 3.8e-12 75.5 81 54.3
CSS0047848 Camellia sinensis var. sinensis HOM05D006846 ORTHO05D008473 4.9e-12 75.1 60 65.0
MBI19_g16347_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 4.2e-11 72.0 95 47.4
AagrBONN_evm.TU.Sc2ySwM_117.777 Anthoceros agrestis HOM05D006846 ORTHO05D008473 4.6e-10 68.6 50 54.0
Cre04.g216300 Chlamydomonas reinhardtii HOM05D006846 ORTHO05D008473 5.6e-08 61.6 104 31.7
Dinv18032 Davidia involucrata HOM05D006846 ORTHO05D008473 2.4e-06 56.2 78 39.7


User provided reference genes

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