Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 0.0e+00 1380.5 647 100.0
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 0.0e+00 1158.7 646 83.0
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 0.0e+00 1151.0 649 82.4
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 0.0e+00 1150.2 648 83.3
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1148.3 650 81.4
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 0.0e+00 1142.5 650 81.5
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 0.0e+00 1141.7 644 82.3
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 0.0e+00 1139.8 651 81.0
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 0.0e+00 1139.4 625 83.8
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 0.0e+00 1134.4 624 84.0
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 0.0e+00 1134.0 642 81.6
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 0.0e+00 1134.0 652 79.4
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1131.7 668 78.4
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 0.0e+00 1130.2 626 82.3
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1129.0 650 80.0
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 0.0e+00 1127.9 649 81.0
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1127.5 640 81.1
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 0.0e+00 1127.5 625 83.4
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 0.0e+00 1126.3 644 81.7
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 0.0e+00 1125.9 648 80.2
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 0.0e+00 1124.0 626 82.1
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 0.0e+00 1123.6 641 81.7
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 0.0e+00 1122.5 639 81.5
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 0.0e+00 1119.4 646 80.3
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 0.0e+00 1119.4 643 81.5
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 0.0e+00 1119.0 650 79.7
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 0.0e+00 1118.6 647 79.9
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 0.0e+00 1117.8 644 80.6
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 0.0e+00 1116.3 647 81.1
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 0.0e+00 1115.5 643 80.4
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1115.1 650 79.5
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 0.0e+00 1114.0 626 82.3
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 0.0e+00 1112.8 652 79.8
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 0.0e+00 1112.8 625 81.6
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 0.0e+00 1112.8 644 78.3
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 0.0e+00 1112.4 626 82.1
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 0.0e+00 1108.6 644 80.4
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 0.0e+00 1107.8 645 78.4
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 0.0e+00 1107.4 642 79.1
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 0.0e+00 1107.0 642 78.3
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 0.0e+00 1104.0 616 82.1
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 0.0e+00 1103.2 628 81.1
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 0.0e+00 1101.7 616 82.0
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 0.0e+00 1100.9 650 78.6
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 0.0e+00 1099.0 642 80.1
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 0.0e+00 1098.2 625 80.8
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 0.0e+00 1097.4 615 82.3
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 0.0e+00 1096.3 638 77.6
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 0.0e+00 1095.9 653 76.6
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 0.0e+00 1095.1 624 80.0
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 0.0e+00 1092.8 647 78.2
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1092.0 646 76.6
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 0.0e+00 1092.0 646 76.6
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 0.0e+00 1092.0 642 77.3
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1091.3 644 77.2
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 0.0e+00 1090.9 629 80.0
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 0.0e+00 1090.5 624 79.2
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 0.0e+00 1087.8 624 78.8
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 0.0e+00 1086.2 643 77.4
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 0.0e+00 1085.9 643 77.4
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 0.0e+00 1085.1 641 77.8
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 0.0e+00 1084.7 642 78.2
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 0.0e+00 1084.3 653 76.4
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 0.0e+00 1084.3 611 82.2
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 0.0e+00 1080.5 623 79.1
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1080.1 651 75.9
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 0.0e+00 1078.9 723 71.4
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 0.0e+00 1078.5 613 81.7
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 0.0e+00 1076.2 597 83.1
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 8.9e-312 1073.2 651 75.6
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 5.3e-311 1070.5 609 79.1
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 7.4e-310 1066.6 782 67.3
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 2.4e-308 1061.6 641 76.3
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 5.5e-305 1050.4 644 76.1
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 2.7e-304 1048.1 637 75.2
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 3.4e-302 1041.2 854 60.4
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 4.4e-302 1040.8 696 71.1
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 9.8e-302 1039.6 651 75.4
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 1.4e-300 1035.8 647 75.4
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 1.6e-299 1032.3 641 73.8
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 3.8e-298 1027.7 651 74.8
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 5.7e-294 1013.8 655 74.0
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 4.5e-291 1004.2 647 73.4
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 5.9e-291 1003.8 571 82.3
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 3.4e-286 988.0 606 75.1
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 1.0e-282 976.5 563 81.3
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 9.5e-281 969.9 577 78.2
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 1.7e-277 959.1 591 76.3
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 3.7e-277 958.0 563 77.6
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 7.0e-276 953.7 551 80.9
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 1.2e-272 943.0 535 82.1
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 2.6e-270 935.3 572 76.9
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 7.5e-270 933.7 568 76.9
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 9.2e-268 926.8 633 70.0
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 1.3e-266 922.9 648 67.9
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 3.4e-262 908.3 658 66.6
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 4.4e-262 907.9 625 70.4
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 2.7e-259 898.7 586 71.8
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 2.4e-247 859.0 620 62.9
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 2.0e-246 855.9 625 66.9
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 2.3e-242 842.4 644 61.3
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 1.2e-230 803.5 653 59.1
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 9.3e-228 793.9 643 58.2
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 6.3e-224 781.2 506 70.9
MELO3C012862.2 Cucumis melo HOM05D004940 ORTHO05D007805 6.3e-216 754.6 465 77.4
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 1.7e-213 746.5 564 62.1
HPP92_012807 Vanilla planifolia HOM05D004940 ORTHO05D007805 1.8e-202 709.9 429 76.9
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 1.7e-192 676.8 477 68.6
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 1.3e-189 667.2 380 81.3
SHI09716 Sapria himalayana HOM05D004940 ORTHO05D000023 1.5e-180 637.1 433 70.9
Atru.chr5.1796 Acer truncatum HOM05D004940 ORTHO05D007805 5.5e-180 635.2 367 81.2
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 2.1e-131 473.8 246 84.6
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 1.2e-121 441.4 478 50.8
PSO832G4005 Papaver somniferum HOM05D004940 ORTHO05D007805 2.2e-120 437.2 257 79.4
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 1.8e-93 347.8 190 82.1
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 3.1e-82 310.5 188 72.9
PGSC0003DMG401024284 Solanum tuberosum HOM05D004940 ORTHO05D007805 2.6e-81 307.4 173 84.4
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 4.5e-73 280.0 233 62.2
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 2.2e-59 234.6 122 84.4
Lj1C79T2 Lonicera japonica HOM05D004940 ORTHO05D007805 4.1e-58 230.3 130 77.7
SEGI_20278 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 3.4e-52 210.7 159 61.0
Os02g0814100 Oryza sativa ssp. japonica HOM05D004940 ORTHO05D007805 4.9e-51 206.8 122 76.2
SMO181G0022 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 4.1e-50 203.8 357 36.4
Lsat_1_v5_gn_2_111960 Lactuca sativa HOM05D004940 ORTHO05D007805 5.2e-45 186.8 105 81.0
SHI09711 Sapria himalayana HOM05D004940 ORTHO05D018819 9.2e-42 176.0 121 65.3
Zm00001eb037190 Zea mays HOM05D004940 ORTHO05D007805 1.6e-41 175.3 83 90.4
SEGI_40684 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 8.4e-35 152.9 117 67.5
CSS0009798 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 3.6e-30 137.5 87 71.3
MCO05G688 Micromonas commoda HOM05D001762 ORTHO05D001774 3.4e-28 131.0 266 32.3
CSS0004187 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 3.8e-27 127.5 87 67.8
CSS0032793 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 3.8e-27 127.5 87 67.8
Lj1C79G2 Lonicera japonica HOM05D004940 ORTHO05D003385 3.8e-27 127.5 66 87.9
CSS0034361 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.9e-26 125.2 152 46.1
Cre02.g106400 Chlamydomonas reinhardtii HOM05D001762 ORTHO05D001774 3.3e-23 114.4 270 27.4
SEGI_20843 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 9.6e-23 112.8 96 61.5
VMungo0251G2796 Vigna mungo HOM05D004940 ORTHO05D007805 9.6e-23 112.8 51 96.1
Lj1C79T15 Lonicera japonica HOM05D004940 ORTHO05D048414 1.1e-21 109.4 79 68.4
Cfa024946 Carpinus fangiana HOM05D001762 ORTHO05D001774 6.9e-21 106.7 205 30.7
SMO181G0033 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 1.4e-18 99.0 136 42.6
CSS0033490 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.4e-18 98.2 78 57.7
PRCOL_00006657 Prasinoderma coloniale HOM05D001762 ORTHO05D001774 2.4e-18 98.2 270 24.1
CSS0008401 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 9.3e-18 96.3 56 71.4
CSS0049470 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 9.3e-18 96.3 56 71.4
CSS0026527 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 4.6e-17 94.0 78 55.1
CSS0050068 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.9e-15 88.6 79 54.4
Phvul.008G143913 Phaseolus vulgaris HOM05D004940 ORTHO05D022117 4.3e-15 87.4 79 54.4
SEGI_00315 Sequoiadendron giganteum HOM05D004940 ORTHO05D048414 9.6e-15 86.3 65 69.2
CSS0024627 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.8e-14 84.7 73 54.8
CSS0048666 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.8e-14 84.7 73 54.8
MBI13_g29642_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D001085 8.4e-11 73.2 34 76.5


User provided reference genes

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